TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0348.12
         (180 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AW720022                                                               55  7e-09
TC11856 similar to GB|AAO63369.1|28950891|BT005305 At4g11960 {Ar...    27  2.1
BF177756                                                               26  3.5
BP050323                                                               26  4.6
BU494130                                                               25  6.0
TC11917                                                                25  7.8

>AW720022 
          Length = 530

 Score = 55.1 bits (131), Expect = 7e-09
 Identities = 29/46 (63%), Positives = 32/46 (69%)
 Frame = +1

Query: 49  WLGSRSDV*YPRCSIRRQSTYADAEGRRIYLWFLH*QAWALFLAFG 94
           W GS+S V YPRCSIRRQS YADAE   I + F     WA+FLAFG
Sbjct: 394 WYGSKSVVKYPRCSIRRQSAYADAE-EDISMVFALASTWAVFLAFG 528



 Score = 51.6 bits (122), Expect = 8e-08
 Identities = 39/93 (41%), Positives = 52/93 (54%), Gaps = 9/93 (9%)
 Frame = +2

Query: 3   SSRKSRTPSNRTPRLKLFVCNRHEMLIVVVSV**LMTCLIEWS*SIWLGSRSDV*YPRCS 62
           SS  S+ P+ +  +L +    +HEMLI+VV++**LM CLIEWS*S     +S +      
Sbjct: 263 SSVPSKPPTKKPSKLSIA---KHEMLIIVVNL**LMICLIEWS*S*DGMVQSQL------ 415

Query: 63  IRRQSTYADAEG---------RRIYLWFLH*QA 86
               S+  DA           R+IYLWFLH*QA
Sbjct: 416 ----SSILDAVSGGNPHMLMLRKIYLWFLH*QA 502


>TC11856 similar to GB|AAO63369.1|28950891|BT005305 At4g11960 {Arabidopsis
           thaliana;}, partial (34%)
          Length = 613

 Score = 26.9 bits (58), Expect = 2.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 164 DLVALRGACPNCGEE 178
           D + L+G CPNCG E
Sbjct: 156 DFLILKGPCPNCGTE 200


>BF177756 
          Length = 455

 Score = 26.2 bits (56), Expect = 3.5
 Identities = 12/37 (32%), Positives = 20/37 (53%)
 Frame = +1

Query: 135 NIIFIVLGFVIGYPLASAPVKVIQGLWRNDLVALRGA 171
           N++ +V+ F       SAP+  +Q LW N ++   GA
Sbjct: 19  NVVALVINFFSACITGSAPLTAVQLLWVNLIMDTLGA 129


>BP050323 
          Length = 482

 Score = 25.8 bits (55), Expect = 4.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 119 SHGSHNPGLGFSIIVNNIIFIVLGFVIGYPLASAP 153
           + GS N  LGF ++ + IIF+   F   YP    P
Sbjct: 92  NQGSLNRELGFWVLFHKIIFVEKKFR*NYPFFYVP 196


>BU494130 
          Length = 433

 Score = 25.4 bits (54), Expect = 6.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 122 SHNPGLGFSIIVNNIIFIVLGF 143
           S N GLGF +  NNI  I+L F
Sbjct: 50  SDNNGLGFHLTTNNIKAILLDF 115


>TC11917 
          Length = 820

 Score = 25.0 bits (53), Expect = 7.8
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = +3

Query: 95  SLACLGPLSYAVGIAYQNAFGSGLSHGSHNPGLGFSIIVNNIIFIVLGFV 144
           +L CL  +SY + + Y         HGS N    F I   +   I LG V
Sbjct: 474 TLCCLPMMSYFM*LCYNKLLMPSWLHGSLNQINAFPIKTLSFSIIKLGIV 623


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.340    0.149    0.512 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,729,524
Number of Sequences: 28460
Number of extensions: 54775
Number of successful extensions: 313
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of query: 180
length of database: 4,897,600
effective HSP length: 84
effective length of query: 96
effective length of database: 2,506,960
effective search space: 240668160
effective search space used: 240668160
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 52 (24.6 bits)