TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0346.7
         (449 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV773899                                                               42  3e-04
TC8047 similar to UP|Q9ASV9 (Q9ASV9) At1g53210/F12M16_12, partia...    38  0.003
TC14181 similar to UP|Q9FE06 (Q9FE06) Phi-1-like protein (AT5g64...    27  5.3
TC18234 homologue to UP|Q9R1P7 (Q9R1P7) Aspartyl protease (Fragm...    27  5.3
TC14955 UP|O22305 (O22305) Peptide transporter, complete               27  9.0
BP074427                                                               27  9.0
TC9040 similar to UP|RL71_ARATH (P60040) 60S ribosomal protein L...    27  9.0

>AV773899 
          Length = 354

 Score = 41.6 bits (96), Expect = 3e-04
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = -3

Query: 432 QHPRTSFGAKPSFEAIPI 449
           QHPRTSFGAKPSFEAIPI
Sbjct: 352 QHPRTSFGAKPSFEAIPI 299


>TC8047 similar to UP|Q9ASV9 (Q9ASV9) At1g53210/F12M16_12, partial (31%)
          Length = 1144

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 21/97 (21%), Positives = 49/97 (49%), Gaps = 3/97 (3%)
 Frame = +1

Query: 289 LVISLLSEYVVGTIEAASDSWGISVSFISIILLPIVGNAAEHAGSIIFAFKNK---LDIS 345
           ++ +  ++ +V  ++  S++  I   FIS I LP+  N++E   +IIFA ++K     ++
Sbjct: 283 IIAAAFADPLVDAVDNFSEATTIPAFFISFIFLPLATNSSEAVSAIIFASRDKRQTASLT 462

Query: 346 LGVAMGSATQISMFVVPLSVIVAWIMGIKMDLDFNLL 382
                G+ T  ++  + + + + +  G+  D    +L
Sbjct: 463 FSEIYGAVTMNNVLCLSVFLALVYARGLTWDFSSEVL 573


>TC14181 similar to UP|Q9FE06 (Q9FE06) Phi-1-like protein (AT5g64260/MSJ1_10),
            partial (84%)
          Length = 1244

 Score = 27.3 bits (59), Expect = 5.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 405  YMKGVVLTLCYLVIAACFFV 424
            + KG VL+LC  V  +CFFV
Sbjct: 1028 WRKGSVLSLCMYVFLSCFFV 1087


>TC18234 homologue to UP|Q9R1P7 (Q9R1P7) Aspartyl protease (Fragment),
           partial (5%)
          Length = 567

 Score = 27.3 bits (59), Expect = 5.3
 Identities = 13/19 (68%), Positives = 16/19 (83%)
 Frame = +2

Query: 196 LLLLLGLLCHLLPLLFKYS 214
           LLLLL +  HL+PLLFK+S
Sbjct: 137 LLLLLLVPLHLIPLLFKWS 193


>TC14955 UP|O22305 (O22305) Peptide transporter, complete
          Length = 2300

 Score = 26.6 bits (57), Expect = 9.0
 Identities = 19/65 (29%), Positives = 28/65 (42%)
 Frame = +1

Query: 361  VPLSVIVAWIMGIKMDLDFNLLETGCLAFAIIVTAFTLQDGTSHYMKGVVLTLCYLVIAA 420
            VP+S+       I + +    L TG L F          D +   MKG+  TLC   +AA
Sbjct: 1369 VPMSIFWLLPQNIILGVSNAFLATGMLEF--------FYDQSPEEMKGLGTTLCTSCVAA 1524

Query: 421  CFFVN 425
              ++N
Sbjct: 1525 GSYIN 1539


>BP074427 
          Length = 438

 Score = 26.6 bits (57), Expect = 9.0
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 389 FAIIVTAFTLQDGTSHYMKGVVLTLCYLVIAACFFVNKTA 428
           F  +V  FT+   T HY K   L + + +I     V KTA
Sbjct: 25  FRSVVQHFTIPKNTFHYSKNNTLKISF*IIYQAPHVQKTA 144


>TC9040 similar to UP|RL71_ARATH (P60040) 60S ribosomal protein L7-1,
           complete
          Length = 941

 Score = 26.6 bits (57), Expect = 9.0
 Identities = 24/81 (29%), Positives = 32/81 (38%), Gaps = 3/81 (3%)
 Frame = -3

Query: 2   PVSVVSPSPSMNEDLESNTTNE---ETSHENLSRSMVKRSDSVLVTNNINARFQMLRIFM 58
           PV+ ++P   M   L   T      E   E +    V+ +   L+    NA   ML   +
Sbjct: 747 PVASITPFNIMISFLLQTTKRSFELERP*EVIGLPEVRSNSQYLMDQIFNANNSMLPKSL 568

Query: 59  TNLRVVLLGTKLVVLFPAVPL 79
            N RVV     L V FP  PL
Sbjct: 567 FNNRVVCQSNSLFVNFPVSPL 505


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.325    0.139    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,088,334
Number of Sequences: 28460
Number of extensions: 90630
Number of successful extensions: 632
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of query: 449
length of database: 4,897,600
effective HSP length: 93
effective length of query: 356
effective length of database: 2,250,820
effective search space: 801291920
effective search space used: 801291920
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)