TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0346.5
         (350 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC10769 homologue to UP|Q9FI52 (Q9FI52) Nucleotide-binding prote...   239  5e-64
TC9038 similar to UP|CAE02007 (CAE02007) OJ000223_09.9 protein, ...   149  7e-37
BI418217                                                               86  1e-17
TC13687 similar to UP|Q9MBA2 (Q9MBA2) MinD (Septum site-determin...    43  9e-05
TC11159 similar to UP|Q9ST64 (Q9ST64) ATPase (Fragment), partial...    30  0.79
TC18928 similar to UP|Q43677 (Q43677) Auxin-induced protein, par...    27  3.9
TC8106 weakly similar to UP|Q9XIV1 (Q9XIV1) mRNA expressed in cu...    27  3.9
BP081891                                                               27  5.1
TC15643 similar to UP|O64720 (O64720) At2g02560 protein, partial...    27  5.1
TC10053 similar to UP|CHLI_SOYBN (P93162) Magnesium-chelatase su...    26  8.7
AV407350                                                               26  8.7

>TC10769 homologue to UP|Q9FI52 (Q9FI52) Nucleotide-binding protein, partial
           (43%)
          Length = 478

 Score =  239 bits (610), Expect = 5e-64
 Identities = 116/137 (84%), Positives = 125/137 (90%)
 Frame = +2

Query: 1   MEKGDIPENANDHCPGSQSDSAGKSDGCQGCPNQQTCATSSPKGPDSDLVAIKERMATVK 60
           ME GDIPE+AN+HCPG QSDSAGKSD C+GCPNQQ CAT+ PKGPD DLVAI ERMATVK
Sbjct: 71  MENGDIPEDANEHCPGPQSDSAGKSDACEGCPNQQICATA-PKGPDPDLVAIAERMATVK 247

Query: 61  HKILVLSGKGGVGKSTFSAQLAFALAAKDFEVGLLDIDICGPSIPKMLGLEGHELHRSNF 120
           HKILVLSGKGGVGKSTFSAQLAFALAA+DF+VGLLDIDICGPSIPKMLGLEG E+H+SN 
Sbjct: 248 HKILVLSGKGGVGKSTFSAQLAFALAARDFQVGLLDIDICGPSIPKMLGLEGQEIHQSNL 427

Query: 121 GCDPVYVQPNLGVMSIG 137
           G  PVYV+ NLGVMSIG
Sbjct: 428 GWSPVYVESNLGVMSIG 478


>TC9038 similar to UP|CAE02007 (CAE02007) OJ000223_09.9 protein, partial
           (23%)
          Length = 500

 Score =  149 bits (376), Expect = 7e-37
 Identities = 69/84 (82%), Positives = 78/84 (92%)
 Frame = +3

Query: 262 WFLKFMREKAPEMVDMIACTEVFDSSGGGAVRMCKEMMIPFLGKVPLDPKLCKAAEEGRS 321
           W L++MREKAPE++++IACTEVFDSSGGGAV+MCKEM +PFLGKVPLDPKLCKAAEEGRS
Sbjct: 3   WTLEYMREKAPELLNLIACTEVFDSSGGGAVKMCKEMEVPFLGKVPLDPKLCKAAEEGRS 182

Query: 322 CFDDKDCVASAFALKNIIEKLMET 345
           CF DKDC  SA ALKNIIEKL+ET
Sbjct: 183 CFGDKDCFVSAPALKNIIEKLLET 254


>BI418217 
          Length = 602

 Score = 85.5 bits (210), Expect = 1e-17
 Identities = 53/127 (41%), Positives = 73/127 (56%), Gaps = 1/127 (0%)
 Frame = +1

Query: 55  RMATVKHKILVLSGKGGVGKSTFSAQLAFALAAK-DFEVGLLDIDICGPSIPKMLGLEGH 113
           R+  VK  I V SGKGGVGKST +  LA ALA+K   +VGLLD D+ GP+IP M+ +   
Sbjct: 226 RIDGVKDTIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPNIPIMMNINTK 405

Query: 114 ELHRSNFGCDPVYVQPNLGVMSIGFVNSDPDDPIILRGPRKSWLITEFLKDVYWNELDFL 173
                +    P+  +  +  MSIGF+  + D PI+ RGP     + +  + V W  LD L
Sbjct: 406 PEATLDKKMIPI-EKYGIKCMSIGFL-VEKDVPIVWRGPMVQKALEQMTRGVDWGNLDIL 579

Query: 174 IVDAPPG 180
           ++D PPG
Sbjct: 580 VMDMPPG 600


>TC13687 similar to UP|Q9MBA2 (Q9MBA2) MinD (Septum site-determining MinD)
           (At5g24020), partial (45%)
          Length = 470

 Score = 42.7 bits (99), Expect = 9e-05
 Identities = 21/49 (42%), Positives = 32/49 (64%)
 Frame = +2

Query: 63  ILVLSGKGGVGKSTFSAQLAFALAAKDFEVGLLDIDICGPSIPKMLGLE 111
           ++V SGKGGVGK+T +A +  +LA   F V  +D D+   ++  +LGLE
Sbjct: 77  VVVTSGKGGVGKTTTTANMGLSLARLGFSVVAIDADVGLRNLDLLLGLE 223


>TC11159 similar to UP|Q9ST64 (Q9ST64) ATPase (Fragment), partial (31%)
          Length = 581

 Score = 29.6 bits (65), Expect = 0.79
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +1

Query: 32  PNQQTCATSSPKGPDSDLVAIKERMATVKHKILVLSGKGGVGKSTFSAQLAFALA 86
           P  +     S   P   +    + ++  + K  +L GKGGVGK++ ++ LA   A
Sbjct: 181 PPTKPLQVRSVAAPAEAVAGFDDMVSGTERKYYLLGGKGGVGKTSCASSLAVKFA 345


>TC18928 similar to UP|Q43677 (Q43677) Auxin-induced protein, partial (53%)
          Length = 612

 Score = 27.3 bits (59), Expect = 3.9
 Identities = 13/21 (61%), Positives = 14/21 (65%)
 Frame = +1

Query: 63  ILVLSGKGGVGKSTFSAQLAF 83
           ILVL G GGVG S FS Q  +
Sbjct: 547 ILVLGGAGGVGTSLFSWQACY 609


>TC8106 weakly similar to UP|Q9XIV1 (Q9XIV1) mRNA expressed in cucumber
           hypocotyls (Arabinogalactan protein), partial (32%)
          Length = 760

 Score = 27.3 bits (59), Expect = 3.9
 Identities = 13/51 (25%), Positives = 20/51 (38%)
 Frame = +3

Query: 4   GDIPENANDHCPGSQSDSAGKSDGCQGCPNQQTCATSSPKGPDSDLVAIKE 54
           G++       C  S    +G+   C G  N + C  +   GP S    +KE
Sbjct: 120 GELSTTGTSSCCLSTCSCSGELSSCTGADNSRPCCDTDR*GPCSGSEQVKE 272


>BP081891 
          Length = 206

 Score = 26.9 bits (58), Expect = 5.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 92  VGLLDIDICGPSIPKMLGLEGHELHRSNFGCDPVYVQPNL 131
           + +++  IC  SI  ++GLE    H   FG   VYV   L
Sbjct: 201 LSMIEFHICSQSIHILVGLEKAPQHPKFFGIRVVYVNSPL 82


>TC15643 similar to UP|O64720 (O64720) At2g02560 protein, partial (17%)
          Length = 966

 Score = 26.9 bits (58), Expect = 5.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 138 FVNSDPDDPIILRGPRKSWLITEFL 162
           F+NS P   + L+GPR + LI+  L
Sbjct: 262 FLNSSPSSTVCLKGPRSTVLISSCL 188


>TC10053 similar to UP|CHLI_SOYBN (P93162) Magnesium-chelatase subunit chlI,
           chloroplast precursor  (Mg-protoporphyrin IX chelatase)
           , partial (58%)
          Length = 802

 Score = 26.2 bits (56), Expect = 8.7
 Identities = 15/58 (25%), Positives = 31/58 (52%)
 Frame = +3

Query: 129 PNLGVMSIGFVNSDPDDPIILRGPRKSWLITEFLKDVYWNELDFLIVDAPPGTSDEQI 186
           P + V++    NSDP+DP  +    +  +I     DV   +++  +VD P G +++++
Sbjct: 465 PEIKVVAADPYNSDPEDPEFMGVEVRERIIKGEQLDVVLTKIN--MVDLPLGATEDRV 632


>AV407350 
          Length = 425

 Score = 26.2 bits (56), Expect = 8.7
 Identities = 18/53 (33%), Positives = 25/53 (46%)
 Frame = +1

Query: 293 RMCKEMMIPFLGKVPLDPKLCKAAEEGRSCFDDKDCVASAFALKNIIEKLMET 345
           R  K M+IP L +   D +  +   +G   +DDK   +    LKN IEK   T
Sbjct: 253 RTYKSMLIPLLQE---DKRAGETTRKGFYLYDDKRKPSPDPELKNYIEKARST 402


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,871,564
Number of Sequences: 28460
Number of extensions: 75795
Number of successful extensions: 342
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of query: 350
length of database: 4,897,600
effective HSP length: 91
effective length of query: 259
effective length of database: 2,307,740
effective search space: 597704660
effective search space used: 597704660
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)