BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0346.3
(374 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP069022 30 3e-06
BI419972 31 0.38
AV773558 31 0.38
TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly pr... 29 1.4
TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%) 29 1.4
TC10148 28 2.5
TC11753 weakly similar to AAS55571 (AAS55571) At3g09690, partial... 28 2.5
TC11270 similar to UP|Q9LM88 (Q9LM88) F2D10.15, partial (9%) 28 2.5
TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (... 28 3.2
CN825654 27 4.2
TC8259 similar to UP|HMGL_SOYBN (P26585) HMG1/2-like protein (SB... 27 4.2
TC10607 27 5.5
AW164001 27 7.2
AI967639 26 9.4
CB826997 26 9.4
BP036420 26 9.4
TC14038 homologue to UP|Q9LN13 (Q9LN13) T6D22.2, partial (47%) 26 9.4
>BP069022
Length = 137
Score = 29.6 bits (65), Expect(3) = 3e-06
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = -3
Query: 341 GKKENSEMGEIIYF 354
GKKENSEMGEII F
Sbjct: 135 GKKENSEMGEIIIF 94
Score = 28.9 bits (63), Expect(3) = 3e-06
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -1
Query: 353 YFRDSDDEMPD 363
YFRDSDDEMPD
Sbjct: 98 YFRDSDDEMPD 66
Score = 27.7 bits (60), Expect(3) = 3e-06
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -2
Query: 364 SDEDPDDDLDI 374
SDEDPDDDLDI
Sbjct: 64 SDEDPDDDLDI 32
>BI419972
Length = 498
Score = 30.8 bits (68), Expect = 0.38
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +1
Query: 323 DGRRSLDDNSSEAAPISSGKKENSEMGEIIYFRDSDDEMPDSDEDPDDD 371
DGR SL+D + K +E E D DDE D+D+D DD+
Sbjct: 283 DGRFSLEDLLGRKPAYLANKDSETEDDE-----DGDDEDDDADDDDDDE 414
>AV773558
Length = 469
Score = 30.8 bits (68), Expect = 0.38
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = -2
Query: 325 RRSLDDNSSEAAPISSGKKENSEMGEIIYFRDSDDEMPDSDEDPD--DDLD 373
RR+ ++S + + G +E + ++Y D DD+ D D+D D DD D
Sbjct: 456 RRTTTEDSPDGLFFNEGDEELDDDFVLVYSEDDDDDDDDDDDDDDYTDDED 304
>TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly protein
1-like protein 3, partial (81%)
Length = 1298
Score = 28.9 bits (63), Expect = 1.4
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 340 SGKKENSEMGEIIYFRDSDDEMPDSDEDPDDDLD 373
+G+ E S+ +I + DDE D DED DDD D
Sbjct: 737 TGEAEQSDFEDI----EEDDEDGDEDEDEDDDDD 826
>TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%)
Length = 1008
Score = 28.9 bits (63), Expect = 1.4
Identities = 18/53 (33%), Positives = 27/53 (49%), Gaps = 5/53 (9%)
Frame = -2
Query: 324 GRRSLDDNSSEAAP-----ISSGKKENSEMGEIIYFRDSDDEMPDSDEDPDDD 371
G S + ++S+ AP +G +EN E E D +D+ D D+D DDD
Sbjct: 515 GNNSNNKSNSKKAPEGGPGAGAGPEENGEDEED---EDGEDQEDDDDDDEDDD 366
Score = 27.3 bits (59), Expect = 4.2
Identities = 14/37 (37%), Positives = 19/37 (50%)
Frame = -2
Query: 335 AAPISSGKKENSEMGEIIYFRDSDDEMPDSDEDPDDD 371
A P +G+ E E GE DD+ D D+D +DD
Sbjct: 452 AGPEENGEDEEDEDGE----DQEDDDDDDEDDDEEDD 354
>TC10148
Length = 683
Score = 28.1 bits (61), Expect = 2.5
Identities = 18/55 (32%), Positives = 27/55 (48%)
Frame = -3
Query: 36 VFSHLLLQLSSHLIASKSHSQFRSGIVIVALSRTPSSYAALFKTKGIHISSSNNN 90
+FS ++QLSS L+ SHS SS A+L K ++S ++NN
Sbjct: 261 LFSSPVMQLSSRLLVPSSHS---------------SSLASLLALKSSYLSETDNN 142
>TC11753 weakly similar to AAS55571 (AAS55571) At3g09690, partial (9%)
Length = 630
Score = 28.1 bits (61), Expect = 2.5
Identities = 19/60 (31%), Positives = 29/60 (47%), Gaps = 5/60 (8%)
Frame = -1
Query: 48 LIASKSHSQFRSGIVIVALSRTPSSYAALFK-----TKGIHISSSNNNWIHILDCYTDPL 102
LI K+ R+ IV+ +S+ SSY F + H+SSSN W + + Y P+
Sbjct: 417 LILRKNKLSKRAIIVLTYISK--SSYGPKFLGLM*CNEHSHLSSSNEQWSRLWNIYNQPM 244
>TC11270 similar to UP|Q9LM88 (Q9LM88) F2D10.15, partial (9%)
Length = 735
Score = 28.1 bits (61), Expect = 2.5
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +2
Query: 316 GRPIQIYDGRRSLDDNSSEAAPISSGKKENSEMGEIIYFRDSDDEMPDSDEDPDDD 371
GRP + RRS + NS S+ ++ D+E D DED DDD
Sbjct: 113 GRPSKADLARRSANANSPATTAQSTLRRSRRPRNVRYNIDYLDEEDEDEDEDEDDD 280
>TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (SPBC3D6.14C
protein) (Fragment), partial (15%)
Length = 543
Score = 27.7 bits (60), Expect = 3.2
Identities = 18/57 (31%), Positives = 28/57 (48%)
Frame = +3
Query: 317 RPIQIYDGRRSLDDNSSEAAPISSGKKENSEMGEIIYFRDSDDEMPDSDEDPDDDLD 373
R I++++G ++ + E P K ++ E D D+E D DED DDD D
Sbjct: 156 RLIELHNGLQAWLVHDPEIYPDGPPKPVQTDNEEE---EDDDEEEDDEDEDDDDDDD 317
Score = 26.6 bits (57), Expect = 7.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 337 PISSGKKENSEMGEIIYFRDSDDEMPDSDEDPDDDLD 373
P+ + +E + E + DDE D D+D DDD D
Sbjct: 234 PVQTDNEEEEDDDE-----EEDDEDEDDDDDDDDDDD 329
>CN825654
Length = 580
Score = 27.3 bits (59), Expect = 4.2
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Frame = +2
Query: 323 DGRRSLDDNSSEAAPISSGKKEN--SEMGEIIY----FRDSDDEMPDSDEDPDDDL 372
DGR DD + KK + S+ G ++ F D D+ D +ED D+D+
Sbjct: 395 DGRDGNDDVDEPVIAFTGKKKSSKGSKKGGALFSAASFDDVDEAKDDKEEDDDEDI 562
>TC8259 similar to UP|HMGL_SOYBN (P26585) HMG1/2-like protein (SB11
protein), partial (92%)
Length = 942
Score = 27.3 bits (59), Expect = 4.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 331 NSSEAAPISSGKKENSEMGEIIYFRDSDDEMPDSDEDPDDD 371
N +A ++ +E SE + D D++ DSDED DD+
Sbjct: 512 NKKQAEGPAAADEEESEKS-VSEVNDQDEDDDDSDEDDDDE 631
>TC10607
Length = 411
Score = 26.9 bits (58), Expect = 5.5
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +1
Query: 127 SYKTVKDLDKLFSVITELGRGLIGENKARFCVAIDSLSELLRHASLQSVAGLLSNLRSHD 186
+YK V+ ++ ++ LG G ++ A+ + ELLR L + G+ ++ +HD
Sbjct: 250 AYKAVEYVES--GMVLGLGTGSTAKH------AVARIGELLRQGKLTDIVGIPTSTMTHD 405
Query: 187 Q 187
Q
Sbjct: 406 Q 408
>AW164001
Length = 447
Score = 26.6 bits (57), Expect = 7.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 340 SGKKENSEMGEIIYFRDSDDEMPDSDEDPDDDLD 373
S K+N + E+ D D++ D D+D DDD D
Sbjct: 31 SVNKQNDD--EVYKEEDVDEDFDDDDDDDDDDDD 126
Score = 26.2 bits (56), Expect = 9.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 341 GKKENSEMGEIIYFRDSDDEMPDSDEDPDDDLD 373
G N + + +Y + DE D D+D DDD D
Sbjct: 25 GDSVNKQNDDEVYKEEDVDEDFDDDDDDDDDDD 123
>AI967639
Length = 335
Score = 26.2 bits (56), Expect = 9.4
Identities = 14/36 (38%), Positives = 21/36 (57%)
Frame = +1
Query: 339 SSGKKENSEMGEIIYFRDSDDEMPDSDEDPDDDLDI 374
S G +E+ E + + + +DE D D+D DDDL I
Sbjct: 94 SEGDEEDEEEDQGDEY-NLEDEEEDDDDDDDDDLSI 198
>CB826997
Length = 563
Score = 26.2 bits (56), Expect = 9.4
Identities = 14/51 (27%), Positives = 25/51 (48%)
Frame = +3
Query: 199 LHEERAAAVLEYMSSMVASVAPLHHSAERGNLENSLSEQNFTKGRLNVRFK 249
L ++ + V E ++ P + G L + L++ NF+KGR + FK
Sbjct: 363 LEDDNSNTVWESFKDPRDTLLPSQVLEKGGKLSSRLTDTNFSKGRSELFFK 515
>BP036420
Length = 442
Score = 26.2 bits (56), Expect = 9.4
Identities = 15/42 (35%), Positives = 22/42 (51%), Gaps = 2/42 (4%)
Frame = -2
Query: 39 HLLLQLSSHLIASKSHSQF--RSGIVIVALSRTPSSYAALFK 78
HLL+QL HL+ + +F RS + S P Y A++K
Sbjct: 315 HLLIQLGFHLMTNSQGREFF*RSDLDCYPPSSHPPKY*AIYK 190
>TC14038 homologue to UP|Q9LN13 (Q9LN13) T6D22.2, partial (47%)
Length = 1844
Score = 26.2 bits (56), Expect = 9.4
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 88 NNNWIHILDCYTDPLGW 104
+N W+ + DC+ PLGW
Sbjct: 1792 SNCWLVMFDCF*PPLGW 1842
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.314 0.131 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,695,335
Number of Sequences: 28460
Number of extensions: 74090
Number of successful extensions: 421
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of query: 374
length of database: 4,897,600
effective HSP length: 92
effective length of query: 282
effective length of database: 2,279,280
effective search space: 642756960
effective search space used: 642756960
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0346.3