BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0346.14
(1622 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP066094 277 6e-79
BP084332 191 6e-52
AV780009 121 1e-27
BP052632 105 7e-23
BP052756 88 9e-18
BP075943 68 1e-11
TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%) 66 5e-11
AV427921 64 1e-10
BP063694 64 2e-10
AU088980 60 2e-09
BP043850 57 2e-08
BP057233 57 3e-08
AV766665 55 7e-08
TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela... 55 7e-08
TC10186 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprot... 38 2e-07
TC17418 similar to UP|Q94AX2 (Q94AX2) AT5g39790/MKM21_80, partia... 52 1e-06
AV766088 52 1e-06
AV424544 49 5e-06
TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%) 49 5e-06
BP033602 46 4e-05
>BP066094
Length = 532
Score = 277 bits (709), Expect(3) = 6e-79
Identities = 136/149 (91%), Positives = 142/149 (95%)
Frame = +2
Query: 1204 ARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDEKNPDHVFKLKK 1263
++ EAIRLLISFSVNHNI+LHQM+VKSAFLNGYISEEVYVHQPPG EDEKN DH+FKLKK
Sbjct: 86 SKTEAIRLLISFSVNHNIILHQMNVKSAFLNGYISEEVYVHQPPGXEDEKNSDHIFKLKK 265
Query: 1264 SLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDKIIFGSANQ 1323
SLYGLKQAPRAWYERLSSFLLENE VRGKVDTTLFCKTYKDDILIVQIYVD IIFGSAN
Sbjct: 266 SLYGLKQAPRAWYERLSSFLLENEXVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANP 445
Query: 1324 SLCKEFSKMMQAEFEMSMMGELKYFLGIQ 1352
SLCKEFS+MMQAEFEM MMGELKYFLGIQ
Sbjct: 446 SLCKEFSEMMQAEFEMRMMGELKYFLGIQ 532
Score = 35.8 bits (81), Expect(3) = 6e-79
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = +3
Query: 1188 YSQQEGIDYTETFVPVAR 1205
YSQQ GIDYTETF PVAR
Sbjct: 39 YSQQ*GIDYTETFAPVAR 92
Score = 21.6 bits (44), Expect(3) = 6e-79
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 1178 RNKARLVAKG 1187
RNKARLVA+G
Sbjct: 10 RNKARLVAQG 39
>BP084332
Length = 368
Score = 191 bits (485), Expect(3) = 6e-52
Identities = 92/96 (95%), Positives = 95/96 (98%)
Frame = +2
Query: 1508 QSTIELSTAKAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHS 1567
QSTI LSTA+AEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHS
Sbjct: 32 QSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHS 211
Query: 1568 RAKHIEVKYHFIRDYVQKGVLLLKFVDTDHKWADIY 1603
RAKHIEVKYHFIRDYVQKGVLLLKFVDTDH+WADI+
Sbjct: 212 RAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIF 319
Score = 31.2 bits (69), Expect(3) = 6e-52
Identities = 15/17 (88%), Positives = 16/17 (93%)
Frame = +1
Query: 1602 IYKALSRG*I*FHYEKS 1618
+YKALSRG*I*FH EKS
Sbjct: 316 LYKALSRG*I*FHSEKS 366
Score = 21.6 bits (44), Expect(3) = 6e-52
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 1493 CQFLGSNL 1500
CQFLGSNL
Sbjct: 4 CQFLGSNL 27
>AV780009
Length = 529
Score = 121 bits (303), Expect = 1e-27
Identities = 63/165 (38%), Positives = 100/165 (60%), Gaps = 6/165 (3%)
Frame = -1
Query: 1445 AVKRILRYLKGTTNLGLMYKKTSEYKLSGYCDVDYAGDRT*RKSTFGNCQFLGSNLVSWA 1504
A R+LRY+KG GL + S KL Y D D+AG R+S G FLG++L+SW
Sbjct: 526 AATRVLRYVKGAPAQGLFFSADSPLKLQAYSDSDWAGCPDTRRSVTGYSIFLGTSLISWR 347
Query: 1505 SKRQSTIELSTAKAEY--ISAAICSTQMLWMKHQLEDYQILESN----IPIYCDNTAAIS 1558
+K+Q+T+ S+++AEY ++A +C Q W+ + +Q L+ N +P++CDN +A+
Sbjct: 346 TKKQTTVSRSSSEAEYRALAATVCEVQ--WLSYL---FQFLKLNVPLPVPLFCDNQSALH 182
Query: 1559 LSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHKWADIY 1603
++ NP H R KHIE+ H +R +Q G++ L + T H+ ADI+
Sbjct: 181 IAHNPTFHERTKHIELDCHVVRAKLQAGLIHLLPISTHHQLADIF 47
>BP052632
Length = 489
Score = 105 bits (261), Expect = 7e-23
Identities = 50/114 (43%), Positives = 70/114 (60%)
Frame = -3
Query: 950 KTPYELWKNIKPNISYFHSFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNT 1009
KTPYELW+ +P +SYFH FGC ++LNT D + KFD K K +LLGYS SK + +N+
Sbjct: 487 KTPYELWRGRRPTVSYFHPFGCK*FILNTNDNIGKFDNKFDKRILLGYSSNSKAYIVFNS 308
Query: 1010 DAKTIEESIHVRFDDKLDSDQSKLVEKFADLSISVSDKGKALEEAEPEEDDPEE 1063
+ +EESI+V+FDD +L + F +L +S D+ E +P E EE
Sbjct: 307 RTQVVEESINVKFDD*SIEATYRLEKDFLNLDLSDQDEEVPTNEGQPSETSHEE 146
>BP052756
Length = 488
Score = 88.2 bits (217), Expect = 9e-18
Identities = 54/124 (43%), Positives = 83/124 (66%), Gaps = 2/124 (1%)
Frame = +1
Query: 319 KRPKKHFKTKKSLMVTFDESESEDVDS--DGEVQGLMTIVKDKEAESKEVPDSDSASEED 376
KRP+K F TKK+L +TFD ++S++ +S D V+ LM + AE ASE+D
Sbjct: 151 KRPRKVF-TKKAL-ITFDATDSDEAESEEDEAVEALMATTS-RGAE---------ASEDD 294
Query: 377 PNSDDENEVFASFSTSELKHALSDIMDKYNSLLTKHKKLKKDFSAASKTPSEHEKIISEL 436
+S++++EVF+ FS SEL+ ALS+IM K++ LL KHK+LKK ++ + + HEK +SEL
Sbjct: 295 SDSENDDEVFSDFSLSELRTALSEIMKKHDILLNKHKELKKKYAVKTSSSEVHEKSVSEL 474
Query: 437 KNDN 440
++N
Sbjct: 475 IDEN 486
>BP075943
Length = 547
Score = 68.2 bits (165), Expect = 1e-11
Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 2/159 (1%)
Frame = -3
Query: 1311 IYVDKIIFGSANQSLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKE 1370
+YVD ++ + + + +F + +GE KYFLG+++ ++ G ++Q KY +
Sbjct: 515 LYVDDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSGIVLNQRKYALQ 336
Query: 1371 LLKKFNMTESTIAKTPMHPTCILEKEDASGKVCQKL--YRCMIGSLLYLTASRPDNLFSV 1428
L+ + H T +G + YR ++G LLYL +RPD F+V
Sbjct: 335 LISDSGHFGFQ-PRFYSHGTNSQTLGTNTGTPLTDIGSYRRIVGRLLYLNTTRPDITFAV 159
Query: 1429 HLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTS 1467
+ ++F S P + H + L+YL G+ GL Y +S
Sbjct: 158 NQLSQFLSAPTDIHEQQLTGFLKYL*GSPGSGLFYPASS 42
>TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%)
Length = 553
Score = 65.9 bits (159), Expect = 5e-11
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Frame = +1
Query: 1532 WMKHQLEDYQI-LESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLL 1590
W+ + L+D ++ E +YCDN +A ++ NP+ H R KHIE+ H +R+ +QKG++ L
Sbjct: 4 WLTYLLQDLKVPFEQPALVYCDNNSARHIAANPVFHERTKHIEIDCHIVRERIQKGLIHL 183
Query: 1591 KFVDTDHKWADIY-KALS 1607
+ + ADIY KALS
Sbjct: 184 LPISSSEPLADIYTKALS 237
>AV427921
Length = 284
Score = 64.3 bits (155), Expect = 1e-10
Identities = 32/79 (40%), Positives = 43/79 (53%)
Frame = +1
Query: 896 TPQQNGVVERKNRTLQEMARTMLQEIGMAKHFWAEVVNTACYIQNRISVRRILNKTPYEL 955
TPQQNGV ERKNRT+ M R++L G+ K F E V + +I NR + N P E
Sbjct: 22 TPQQNGVSERKNRTILNMVRSLLTMSGLPKSFLPEAVMWSLHILNRSPTLVVQNMMPEEA 201
Query: 956 WKNIKPNISYFHSFGCVCY 974
W +P + +F C+ Y
Sbjct: 202 WSGRQPAVDHFRISRCLAY 258
>BP063694
Length = 511
Score = 63.9 bits (154), Expect = 2e-10
Identities = 45/125 (36%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
Frame = -2
Query: 735 EQWV*HRRLGHASMRKISQLSK---LNLVRGLPTLKFSSDALCEACQKGKFTKVPFKAKN 791
E W H RLGH + I QL K L++ LP C +CQ K ++ F N
Sbjct: 363 ELW--HSRLGHVNFDIIKQLHKHGCLDVSSILP-----KPICCTSCQMAKSKRLVFHDNN 205
Query: 792 VVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLSRKDESHSVFSTFI 851
S L+L+H DL GP SI G Y ++ VDD+SR+TW L RK + V F
Sbjct: 204 K-RASAVLDLIHCDLRGPSPVASIDGFSYFVIFVDDFSRFTWFYPLKRKSDFSDVLLRFK 28
Query: 852 AQVQN 856
++N
Sbjct: 27 VFMEN 13
>AU088980
Length = 360
Score = 60.5 bits (145), Expect = 2e-09
Identities = 28/105 (26%), Positives = 49/105 (46%)
Frame = +2
Query: 900 NGVVERKNRTLQEMARTMLQEIGMAKHFWAEVVNTACYIQNRISVRRILNKTPYELWKNI 959
N +VERK+R + + R ++ + K+ W V A Y+ N + + + PY+ N
Sbjct: 2 NSIVERKHRHILNVTRALMFHSYLPKNLWTFAVKHAAYLINXLPSPLLKGQCPYQFLNND 181
Query: 960 KPNISYFHSFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGF 1004
P + FG +CY K D ++ KC+ LG+ + G+
Sbjct: 182 SPTLLDLKVFGTLCYSSTLTHNXQKLDPRARKCVFLGFKTGTXGY 316
>BP043850
Length = 515
Score = 57.4 bits (137), Expect = 2e-08
Identities = 29/83 (34%), Positives = 51/83 (60%), Gaps = 2/83 (2%)
Frame = -1
Query: 1528 TQMLWMKHQLEDYQILESN-IPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKG 1586
++++W++ L + L+S P++ DNT+AI ++ NP+ H +HIEV H +R+ +
Sbjct: 515 SEIIWLRGLLSELGFLQSQPTPLHADNTSAIQIAANPVYHEWTRHIEVDCHSVREAYDRR 336
Query: 1587 VLLLKFVDTDHKWADIY-KALSR 1608
V+ L V T + ADI K+L+R
Sbjct: 335 VITLPHVSTSVQIADILTKSLTR 267
>BP057233
Length = 473
Score = 56.6 bits (135), Expect = 3e-08
Identities = 23/53 (43%), Positives = 39/53 (73%)
Frame = -2
Query: 1549 IYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHKWAD 1601
++CDN +A +L+ NP+LH+R+KHIE+ H+IRD V + +++ +V T + AD
Sbjct: 445 LWCDNLSAKALASNPVLHARSKHIEIDVHYIRDQVLQNEVVVAYVPTTDQIAD 287
>AV766665
Length = 601
Score = 55.5 bits (132), Expect = 7e-08
Identities = 29/76 (38%), Positives = 41/76 (53%)
Frame = +3
Query: 1444 TAVKRILRYLKGTTNLGLMYKKTSEYKLSGYCDVDYAGDRT*RKSTFGNCQFLGSNLVSW 1503
T RI YLK + G +++K + + G+ DY G R ST G FL NLV+W
Sbjct: 360 TFTTRIF*YLKANSRRGPLFQKEGKSSMDGFTYADYLGSIVDRLSTMGYYMFLSGNLVTW 539
Query: 1504 ASKRQSTIELSTAKAE 1519
SK+Q+ I S+ +AE
Sbjct: 540 RSKQQNIIARSSGEAE 587
>TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease] , partial (9%)
Length = 747
Score = 55.5 bits (132), Expect = 7e-08
Identities = 36/145 (24%), Positives = 69/145 (46%), Gaps = 9/145 (6%)
Frame = +2
Query: 1281 SFLLENEFVRGKVDTTLFCKTYKD-DILIVQIYVDKIIFGSANQSLCKEFSKMMQAEFEM 1339
SF++ + R D + K + D D +I+ +YVD ++ N+ +E + EF+M
Sbjct: 8 SFIMSLGYNRLSSDHCTYHKRFDDNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDM 187
Query: 1340 SMMGELKYFLGIQV--DQTPEGTYIHQSKYTKELLKKFNMTESTIAKTP------MHPTC 1391
+G LG+Q+ D+ ++ Q Y +++L++FNM + TP + +
Sbjct: 188 KDLGPANKILGMQIHRDRKDRRIWLSQKNYLQKVLRRFNMQDCNPISTPLPVNYKLSSSM 367
Query: 1392 ILEKEDASGKVCQKLYRCMIGSLLY 1416
I E ++ + Y +GSL+Y
Sbjct: 368 IPSSEAERMEMSRVPYASAVGSLMY 442
>TC10186 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
(4%)
Length = 528
Score = 37.7 bits (86), Expect(2) = 2e-07
Identities = 18/32 (56%), Positives = 22/32 (68%)
Frame = +3
Query: 1571 HIEVKYHFIRDYVQKGVLLLKFVDTDHKWADI 1602
+IE KYHF+RD V KG + LK TD + ADI
Sbjct: 69 NIETKYHFLRDQVTKGKISLKHCGTDLQVADI 164
Score = 35.4 bits (80), Expect(2) = 2e-07
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +2
Query: 1552 DNTAAISLSKNPILHSRAKHIE 1573
DN +AI L+KNP+ H R+KHIE
Sbjct: 5 DNKSAIDLAKNPVSHGRSKHIE 70
>TC17418 similar to UP|Q94AX2 (Q94AX2) AT5g39790/MKM21_80, partial (20%)
Length = 739
Score = 51.6 bits (122), Expect = 1e-06
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Frame = -1
Query: 1364 QSKYTKELLKKFNMTESTIAKTPMHPTCILEKEDASGK-VCQKLYRCMIGSLLYLTASRP 1422
Q Y ++LKKF MT S T + I GK V Y+ +IGS+ YL R
Sbjct: 739 QKIYVDDILKKFKMTNSKYISTTIGGKEIEAGRRNGGKRVDSTYYKSLIGSVRYLNTVRS 560
Query: 1423 DNLFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGL 1461
D + V L +RF +P + H +R LRY+KGT G+
Sbjct: 559 DIVCGVGLRSRFM-EP*DCH*QGAQRSLRYIKGTLKDGI 446
>AV766088
Length = 501
Score = 51.6 bits (122), Expect = 1e-06
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Frame = -3
Query: 740 HRRLGHASMRKISQLSKLNLVRGLPTLKFSSDALCEACQKGKFTKVPFKAKNVVSTSRPL 799
H RLGH S + L + N L +S +CE+C GK ++PF + N V T P
Sbjct: 301 HSRLGHPSSSALRYL-RSNKFISYELLNYSP--VCESCVFGKHVRLPFVSSNNV-TVMPF 134
Query: 800 ELLHIDLF-GPVKTESIGGKRYGMVIVDDYSRWTWVKFLSRKDE 842
++LH DL+ PV S G R+ ++ +DD++ + W LS K +
Sbjct: 133 DILHSDLWTSPVL--SSAGHRFYVLFLDDFTDFLWTFPLSNKSQ 8
>AV424544
Length = 276
Score = 49.3 bits (116), Expect = 5e-06
Identities = 25/90 (27%), Positives = 48/90 (52%)
Frame = +3
Query: 1278 RLSSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDKIIFGSANQSLCKEFSKMMQAEF 1337
+LSS+L +++ D +LF K ++ +YVD +I + + + + +F
Sbjct: 6 KLSSYLHILGYIQSAHDHSLFTKFRDASFTVILVYVDDLILAGNDLNEIQCVKNKLDIQF 185
Query: 1338 EMSMMGELKYFLGIQVDQTPEGTYIHQSKY 1367
+ +G LKYFLG++V ++ G ++ Q KY
Sbjct: 186 RIKDLGTLKYFLGLEVARSSCGLFLSQRKY 275
>TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%)
Length = 550
Score = 49.3 bits (116), Expect = 5e-06
Identities = 25/76 (32%), Positives = 43/76 (55%), Gaps = 1/76 (1%)
Frame = +3
Query: 1529 QMLWMKHQLEDYQILESN-IPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGV 1587
+ LW+ + L D +I + IYCDN +A+ L+ N + H R ++IE+ H + V G+
Sbjct: 21 EALWLTYALADLRIASLLLVVIYCDNRSALHLAANSVFHKRTENIEIDCHIV*VKVLFGI 200
Query: 1588 LLLKFVDTDHKWADIY 1603
L L V + + AD++
Sbjct: 201 LHLLHVPSSDQVADVF 248
>BP033602
Length = 533
Score = 46.2 bits (108), Expect = 4e-05
Identities = 29/99 (29%), Positives = 52/99 (52%)
Frame = +3
Query: 731 SVNEEQWV*HRRLGHASMRKISQLSKLNLVRGLPTLKFSSDALCEACQKGKFTKVPFKAK 790
SV ++ + H RLGH + + + L +L + + S CE+C K + P+ ++
Sbjct: 255 SVRDQIMLWHNRLGHPNFQYLRHLFP-DLFKNVNC----SSLECESCVLAKNQRAPYYSQ 419
Query: 791 NVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYS 829
SRP L+H D++GP K + GKR+ + +DD++
Sbjct: 420 PY-HASRPFYLIHSDVWGPSKITTQFGKRWFVTFIDDHT 533
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.136 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,570,236
Number of Sequences: 28460
Number of extensions: 365476
Number of successful extensions: 2141
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 2067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2128
length of query: 1622
length of database: 4,897,600
effective HSP length: 103
effective length of query: 1519
effective length of database: 1,966,220
effective search space: 2986688180
effective search space used: 2986688180
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0346.14