TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0344.4
         (242 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC13310                                                               189  3e-49
TC20235                                                               141  9e-35
TC11032                                                               109  4e-25
TC12898 similar to UP|Q7PVN0 (Q7PVN0) ENSANGP00000010532 (Fragme...    30  0.49
TC16150 similar to GB|AAO63328.1|28950809|BT005264 At4g25840 {Ar...    27  4.1
BP054707                                                               27  4.1
BI420658                                                               26  5.4
TC11065 weakly similar to UP|Q8RDP8 (Q8RDP8) Histidinol-phosphat...    26  5.4
AV778881                                                               26  7.0
TC18790                                                                26  7.0
TC14412                                                                25  9.2
TC12779 weakly similar to UP|Q9FMB9 (Q9FMB9) Cysteine-tRNA ligas...    25  9.2
TC8193 similar to UP|Q9M5J4 (Q9M5J4) Beta-galactosidase  (Lactas...    25  9.2

>TC13310 
          Length = 544

 Score =  189 bits (481), Expect = 3e-49
 Identities = 94/99 (94%), Positives = 95/99 (95%)
 Frame = +1

Query: 1   MANLTLNQHANNSEENDSNLEQKLQNWSIPKIRTNQVYKTSIFEFNPDYEIKTVEKSFAV 60
           MANLTLNQHANNSEENDSNLEQKLQNWSIPKIRTNQVYKTSIFEFNPDYEIKTVEKSFAV
Sbjct: 247 MANLTLNQHANNSEENDSNLEQKLQNWSIPKIRTNQVYKTSIFEFNPDYEIKTVEKSFAV 426

Query: 61  QGPYQRISILDSRIVNQHVRKYRDLHIGLVQLAVKPLTR 99
           QGPYQ ISILDSRI NQHVRKY  LHIGLVQ+AVKPLTR
Sbjct: 427 QGPYQSISILDSRIANQHVRKYGYLHIGLVQVAVKPLTR 543


>TC20235 
          Length = 543

 Score =  141 bits (356), Expect = 9e-35
 Identities = 74/105 (70%), Positives = 82/105 (77%), Gaps = 2/105 (1%)
 Frame = +1

Query: 140 CFPSYPVCLRDPHVTTCVDLDIKIPNEMFIDGIPP-VSIMYRFCYKVTDNLSGIKAVRDY 198
           C+PSYPV LRDPHVT C+DLD+KIPNEMF+DG PP VSIMYRFCYKVTD L G+KA R  
Sbjct: 1   CYPSYPVSLRDPHVTKCLDLDVKIPNEMFVDGAPPPVSIMYRFCYKVTDYLRGVKAQRSN 180

Query: 199 TVNETEVTEIN-AENSSRITRKILKHDEITYPQEWLQGCSSQPAP 242
            VNET+V E + A  SS ITR ILKHD I YP+EWL G SS P P
Sbjct: 181 PVNETDVIETHIALYSSEITR-ILKHDRIAYPEEWLPGRSS-PIP 309


>TC11032 
          Length = 610

 Score =  109 bits (273), Expect = 4e-25
 Identities = 52/52 (100%), Positives = 52/52 (100%)
 Frame = +1

Query: 191 GIKAVRDYTVNETEVTEINAENSSRITRKILKHDEITYPQEWLQGCSSQPAP 242
           GIKAVRDYTVNETEVTEINAENSSRITRKILKHDEITYPQEWLQGCSSQPAP
Sbjct: 1   GIKAVRDYTVNETEVTEINAENSSRITRKILKHDEITYPQEWLQGCSSQPAP 156


>TC12898 similar to UP|Q7PVN0 (Q7PVN0) ENSANGP00000010532 (Fragment),
           partial (4%)
          Length = 784

 Score = 29.6 bits (65), Expect = 0.49
 Identities = 22/79 (27%), Positives = 32/79 (39%), Gaps = 4/79 (5%)
 Frame = +1

Query: 37  VYKTSIFEFNPDYEIKTVEKSFAVQGPYQRISILDSRIVNQHV----RKYRDLHIGLVQL 92
           V+ T    F+ +YE     ++F           LD  I  +H     ++Y  L   L   
Sbjct: 481 VWSTRARVFHSEYEFLIPYQAFCPPHGVHCSCALDLCIATEHTDPYEQRYHVLEDPLPSP 660

Query: 93  AVKPLTRLRYCDLPILICL 111
           A  PLT L Y  + I +CL
Sbjct: 661 AAPPLTHLPYLSISISVCL 717


>TC16150 similar to GB|AAO63328.1|28950809|BT005264 At4g25840 {Arabidopsis
           thaliana;}, partial (90%)
          Length = 1065

 Score = 26.6 bits (57), Expect = 4.1
 Identities = 15/56 (26%), Positives = 25/56 (43%), Gaps = 4/56 (7%)
 Frame = -3

Query: 114 KRMLRFHESVLAVLECN----IQNGPAYFNCFPSYPVCLRDPHVTTCVDLDIKIPN 165
           +R+L F+E +L              P+ F CF S+ +CL  P     +  + K+ N
Sbjct: 412 QRVLSFYEKLLGAERITNSSLFNKDPSSFYCFISHHLCLEGPIKCFVISSEYKLLN 245


>BP054707 
          Length = 545

 Score = 26.6 bits (57), Expect = 4.1
 Identities = 11/37 (29%), Positives = 20/37 (53%)
 Frame = -2

Query: 181 FCYKVTDNLSGIKAVRDYTVNETEVTEINAENSSRIT 217
           FCY V    S  + +  ++   T VT + +++ SR+T
Sbjct: 427 FCYDVLHICSDSETMDKFSAKRTSVTLVESKSDSRVT 317


>BI420658 
          Length = 504

 Score = 26.2 bits (56), Expect = 5.4
 Identities = 15/49 (30%), Positives = 28/49 (56%)
 Frame = -1

Query: 66  RISILDSRIVNQHVRKYRDLHIGLVQLAVKPLTRLRYCDLPILICLRDK 114
           R+++  +R VN+  R    L I ++ LA++    L +  +PI +C+ DK
Sbjct: 315 RVNVKKTRRVNK--RTSVTLEIPVIPLALEKTLNL*HVSIPIDLCIGDK 175


>TC11065 weakly similar to UP|Q8RDP8 (Q8RDP8) Histidinol-phosphatase  ,
           partial (4%)
          Length = 508

 Score = 26.2 bits (56), Expect = 5.4
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -3

Query: 9   HANNSEENDSNLEQKLQNWSIPKIRTNQVYKTSIFEF 45
           HA+ ++E   ++ Q +    + K++ + +YKTS   F
Sbjct: 503 HAHATKEGIPSIHQNIYMEKVMKLKADMIYKTSKLSF 393


>AV778881 
          Length = 550

 Score = 25.8 bits (55), Expect = 7.0
 Identities = 17/40 (42%), Positives = 22/40 (54%), Gaps = 4/40 (10%)
 Frame = +3

Query: 28  SIPKIRTNQVYKTSIFEFN----PDYEIKTVEKSFAVQGP 63
           SIP + +N V  TSI E N     + E  +V KSF+V  P
Sbjct: 267 SIPYLASNSVMDTSIVEHNL*FANEEESDSVLKSFSV*NP 386


>TC18790 
          Length = 555

 Score = 25.8 bits (55), Expect = 7.0
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = -2

Query: 7   NQHANNSEENDSNLEQKLQN 26
           NQH ++S +ND  +++K++N
Sbjct: 419 NQHHSHSSDNDKQIKKKIRN 360


>TC14412 
          Length = 816

 Score = 25.4 bits (54), Expect = 9.2
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 99  RLRYCDLPILICLRDKRMLRFHESVLAVLECNIQNGPAYFNC 140
           R+R+    +  C+R     R     +  +ECN+Q G  Y+ C
Sbjct: 22  RIRHEHKLLPFCIRFFNSRRL*LFPMVAIECNMQPGDFYYQC 147


>TC12779 weakly similar to UP|Q9FMB9 (Q9FMB9) Cysteine-tRNA ligase, partial
           (45%)
          Length = 811

 Score = 25.4 bits (54), Expect = 9.2
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +1

Query: 152 HVTTCVDLDIKIPNEMFIDGIPPVSIMYRFCYKVTDNLSGIKAVRDYT 199
           +V    D+D KI       G  P+ +  RFC +   ++SG++  R  T
Sbjct: 310 YVRNFTDVDDKIIKRANETGEDPLMLSKRFCNEYDVDMSGLQCERPST 453


>TC8193 similar to UP|Q9M5J4 (Q9M5J4) Beta-galactosidase  (Lactase) , partial
            (80%)
          Length = 2257

 Score = 25.4 bits (54), Expect = 9.2
 Identities = 11/28 (39%), Positives = 14/28 (49%)
 Frame = -1

Query: 197  DYTVNETEVTEINAENSSRITRKILKHD 224
            +Y   E      +  NSSR+T K  KHD
Sbjct: 1780 EYASYEHTSCSFHQRNSSRVTSKFFKHD 1697


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,601,035
Number of Sequences: 28460
Number of extensions: 66504
Number of successful extensions: 307
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of query: 242
length of database: 4,897,600
effective HSP length: 88
effective length of query: 154
effective length of database: 2,393,120
effective search space: 368540480
effective search space used: 368540480
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)