BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0344.19
(654 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CN825414 391 e-109
CB826854 187 5e-48
CB829048 75 4e-14
TC9263 45 4e-05
AV768999 40 0.001
AV778260 39 0.003
TC13670 35 0.029
TC8967 similar to UP|FXGA_HUMAN (P55316) Forkhead box protein G1... 33 0.14
TC13708 29 2.1
BP042639 28 4.6
BP066191 28 4.6
TC11613 similar to UP|Q8W240 (Q8W240) GT-2 factor (Fragment), pa... 28 6.1
TC11146 similar to UP|Q9SVW7 (Q9SVW7) Ribosomal protein L11-like... 27 7.9
TC17274 27 7.9
>CN825414
Length = 597
Score = 391 bits (1005), Expect = e-109
Identities = 195/195 (100%), Positives = 195/195 (100%)
Frame = +1
Query: 219 REELKIFSGEVVRFGNRCKDPQWHNLDRYFEKLGSELTPQKQLKEEAEVVMQQLMTYVQY 278
REELKIFSGEVVRFGNRCKDPQWHNLDRYFEKLGSELTPQKQLKEEAEVVMQQLMTYVQY
Sbjct: 13 REELKIFSGEVVRFGNRCKDPQWHNLDRYFEKLGSELTPQKQLKEEAEVVMQQLMTYVQY 192
Query: 279 TAELYHELHALDRFDQDYRRKLQEEDNSNATQRGDSLAILRSELKSQKKHVRNLKKKSLW 338
TAELYHELHALDRFDQDYRRKLQEEDNSNATQRGDSLAILRSELKSQKKHVRNLKKKSLW
Sbjct: 193 TAELYHELHALDRFDQDYRRKLQEEDNSNATQRGDSLAILRSELKSQKKHVRNLKKKSLW 372
Query: 339 SKILEEVMEKFVDVVNFLYLEIHEAFGSADPDKQVKDSQGNHKKLGSAGLALHYANIITQ 398
SKILEEVMEKFVDVVNFLYLEIHEAFGSADPDKQVKDSQGNHKKLGSAGLALHYANIITQ
Sbjct: 373 SKILEEVMEKFVDVVNFLYLEIHEAFGSADPDKQVKDSQGNHKKLGSAGLALHYANIITQ 552
Query: 399 IDTLVSRSSSVPPNT 413
IDTLVSRSSSVPPNT
Sbjct: 553 IDTLVSRSSSVPPNT 597
>CB826854
Length = 637
Score = 187 bits (475), Expect = 5e-48
Identities = 96/190 (50%), Positives = 139/190 (72%), Gaps = 2/190 (1%)
Frame = +3
Query: 464 NTTKAHHGFGWVGEWANTGSDVNRKPAGQTDLLRIETLHHADKEKTEAYILELVVWLHHL 523
NT+KAHHGFGWVGEWANTGS+ NRK A QT ++RIET HHADK K E YI++L++WL L
Sbjct: 3 NTSKAHHGFGWVGEWANTGSEANRK-AVQTGIMRIETFHHADKGKVEYYIVDLLLWLQRL 179
Query: 524 VSQVRVGN--GGIRSPAKSPIRSPTQKTGQLFTHKGCSTSPMLTFEDQQMLRDVSKRKLT 581
+++ G+ G ++SP KS + ++KT + T+ + SP+LT ++Q ML+DVSK+ L
Sbjct: 180 AIKIKAGSDAGKVKSPMKSSAGTTSEKTNKESTN---ALSPILTIDEQTMLQDVSKKALI 350
Query: 582 PGISKSQEFSTAKTRLSKHHRLSKSSSHSPISESKNDMFSTRRVLPSVPVIDFDIDRMKA 641
GISKS +F + ++RL +++RL+KS S +S +K+ S R+L +PVIDFDID+ +A
Sbjct: 351 KGISKSMDFDSLRSRLRENYRLTKSWS---LSSTKSKELSFNRILSKLPVIDFDIDKERA 521
Query: 642 LDVIDRVDTI 651
L+VIDR+D +
Sbjct: 522 LNVIDRLDVV 551
>CB829048
Length = 509
Score = 74.7 bits (182), Expect = 4e-14
Identities = 42/75 (56%), Positives = 52/75 (69%)
Frame = +3
Query: 101 STRSRQAAVKVSEVSSLLGRAGTAGLGKAVEVLDTLGSSMTNLNLSSGFTSGVATKGNKI 160
ST S +V + S LG+A +AVEVLDTLGS M LN SGF SG+++KG++I
Sbjct: 294 STPSPSGGKQVGQRVSFLGKASE----RAVEVLDTLGSGMPKLNSGSGFVSGMSSKGHRI 461
Query: 161 SILAFEVANTIVKGA 175
SILAFEVANTI +GA
Sbjct: 462 SILAFEVANTITRGA 506
>TC9263
Length = 559
Score = 45.1 bits (105), Expect = 4e-05
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Frame = +3
Query: 535 RSPAKSPIRSPTQKTGQLFTHKGCSTSPM---LTFEDQQMLRDVSKRKLTPGISKSQEFS 591
RSP K ++ L S P+ L+ ED+++L +V R+ +PG+SKS+E
Sbjct: 12 RSPPKGHDEFQSKMRQFLILSVDSSNKPLGTQLSLEDRRLLEEVIARRRSPGVSKSEELG 191
Query: 592 TAKTRLSKHHRLSKSSSHSPISESKNDMFSTRR 624
A ++H ++S+ P+SE F+ R
Sbjct: 192 AANKTKARHLLRTRSAGSVPVSEFFGTRFTVSR 290
>AV768999
Length = 313
Score = 40.0 bits (92), Expect = 0.001
Identities = 25/71 (35%), Positives = 38/71 (53%)
Frame = -1
Query: 453 KTLQWLVPIATNTTKAHHGFGWVGEWANTGSDVNRKPAGQTDLLRIETLHHADKEKTEAY 512
+ L WL P+A N K W + S + +T++L ++TL A+KEKTEA
Sbjct: 274 RILGWLSPLAHNMIK----------WQSERSFEQQNLVPKTNVLLLQTLFFANKEKTEAA 125
Query: 513 ILELVVWLHHL 523
I EL+V L ++
Sbjct: 124 ITELLVGLTYI 92
>AV778260
Length = 568
Score = 38.9 bits (89), Expect = 0.003
Identities = 20/39 (51%), Positives = 25/39 (63%), Gaps = 4/39 (10%)
Frame = -1
Query: 33 ANNEPGTTYQT----GHINSNSNLRPIDDESDKHQRESF 67
+NN+ G Y + G+INS+SNL IDD DKH R SF
Sbjct: 535 SNNDSGMAYHSTGFSGNINSHSNLPSIDDSFDKHPRLSF 419
>TC13670
Length = 592
Score = 35.4 bits (80), Expect = 0.029
Identities = 25/80 (31%), Positives = 38/80 (47%)
Frame = +3
Query: 567 EDQQMLRDVSKRKLTPGISKSQEFSTAKTRLSKHHRLSKSSSHSPISESKNDMFSTRRVL 626
ED+++L V+KRK TPG+S+S+ + K + S S SP+ +R+L
Sbjct: 3 EDRRLLEKVAKRKWTPGVSQSENLAGIKKTEATVWHFSTSVGSSPV----------KRLL 152
Query: 627 PSVPVIDFDIDRMKALDVID 646
P R LDV+D
Sbjct: 153 AMQP------QRYDVLDVMD 194
>TC8967 similar to UP|FXGA_HUMAN (P55316) Forkhead box protein G1A
(Forkhead-related protein FKHL2) (Transcription factor
BF-2) (Brain factor 2) (BF2) (HFK2), partial (6%)
Length = 1032
Score = 33.1 bits (74), Expect = 0.14
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = -1
Query: 118 LGRAGTAGLGKAVEVLDTLGSSMTNLNLSSGFTSGVATKGNKISILAFEV 167
LG A G +V++ + +G + + GF GVA + N + +LAFEV
Sbjct: 363 LGDVDLAVSGASVDLFEAVGVRVDEALVDEGFEDGVAGETNHVVLLAFEV 214
>TC13708
Length = 539
Score = 29.3 bits (64), Expect = 2.1
Identities = 33/155 (21%), Positives = 59/155 (37%), Gaps = 3/155 (1%)
Frame = +3
Query: 307 NATQRGDSLAILRSELKSQKKHVRNLKKKSLWSKILEEVMEKFVDVVNFLYLEIHEAFGS 366
+AT GD++ L L S+ + + +++ E +E ++ + EIH
Sbjct: 51 SATATGDAVLKLHPLLASKPVFLSIFPAMTDYAQEQEMEIEALEAILMDEFKEIHSGESG 230
Query: 367 ADPDK---QVKDSQGNHKKLGSAGLALHYANIITQIDTLVSRSSSVPPNTRDTLYQGLPP 423
Q+K +Q + + Y + I R PP T QG+PP
Sbjct: 231 LSTSNRCFQIKIAQDE-----DGDMPISYPAQLGLIFAHTERYPDEPPLLNVTSLQGIPP 395
Query: 424 NVKSALRTRLQSFQVKEELTVQQIKAEMEKTLQWL 458
A++ +LQ + E L + I + +WL
Sbjct: 396 EDLRAVKEKLQQ-EASENLGMAMIYTLVTSAKEWL 497
>BP042639
Length = 450
Score = 28.1 bits (61), Expect = 4.6
Identities = 11/35 (31%), Positives = 20/35 (56%)
Frame = +3
Query: 391 HYANIITQIDTLVSRSSSVPPNTRDTLYQGLPPNV 425
HY + +Q++ ++ +SVP N D + +PP V
Sbjct: 270 HYTRVKSQMNPXLAPHNSVPSNGADGVVSSVPPRV 374
>BP066191
Length = 518
Score = 28.1 bits (61), Expect = 4.6
Identities = 17/61 (27%), Positives = 33/61 (53%)
Frame = -1
Query: 535 RSPAKSPIRSPTQKTGQLFTHKGCSTSPMLTFEDQQMLRDVSKRKLTPGISKSQEFSTAK 594
RSP +SP R+ ++ TG++ + + S SP+ + + + R + IS+S S A+
Sbjct: 239 RSPVRSPERTLSRSTGRVLSKRSISRSPVRS-PARSLSRSTGRVPSKRSISRSPVRSPAR 63
Query: 595 T 595
+
Sbjct: 62 S 60
>TC11613 similar to UP|Q8W240 (Q8W240) GT-2 factor (Fragment), partial (26%)
Length = 731
Score = 27.7 bits (60), Expect = 6.1
Identities = 17/59 (28%), Positives = 29/59 (48%)
Frame = +3
Query: 231 RFGNRCKDPQWHNLDRYFEKLGSELTPQKQLKEEAEVVMQQLMTYVQYTAELYHELHAL 289
R RC + +W N+++YF+K+ KQ +E+++ T +HEL AL
Sbjct: 189 RNAKRCNE-KWENINKYFKKVKES---NKQRREDSK------------TCPYFHELEAL 317
>TC11146 similar to UP|Q9SVW7 (Q9SVW7) Ribosomal protein L11-like protein,
partial (88%)
Length = 689
Score = 27.3 bits (59), Expect = 7.9
Identities = 20/61 (32%), Positives = 30/61 (48%), Gaps = 4/61 (6%)
Frame = +1
Query: 367 ADPDKQVKDSQGN-HKKLGSAGLALHYANIITQIDTLVSRSSSV---PPNTRDTLYQGLP 422
A P+ Q + S G H +L L +H + ++ SR + PP +RD L+ GLP
Sbjct: 172 AYPEVQARHSHGGFHHRLQGQHLRVHRQITLRRLVPQESRRRRIR*RPPRSRDRLH-GLP 348
Query: 423 P 423
P
Sbjct: 349 P 351
>TC17274
Length = 554
Score = 27.3 bits (59), Expect = 7.9
Identities = 12/17 (70%), Positives = 14/17 (81%)
Frame = +2
Query: 264 EAEVVMQQLMTYVQYTA 280
EAE +MQ LMT VQ+TA
Sbjct: 140 EAESIMQHLMTLVQFTA 190
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.313 0.129 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,507,436
Number of Sequences: 28460
Number of extensions: 111311
Number of successful extensions: 499
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of query: 654
length of database: 4,897,600
effective HSP length: 96
effective length of query: 558
effective length of database: 2,165,440
effective search space: 1208315520
effective search space used: 1208315520
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0344.19