TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0344.11
         (579 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CN825745                                                               80  7e-16
TC19199                                                                55  3e-08
TC16122                                                                40  8e-04
BP054429                                                               37  0.009
BP050493                                                               35  0.044
CB827131                                                               32  0.37
TC8168 similar to UP|O04720 (O04720) Cysteine proteinase inhibit...    30  1.4
TC13866 homologue to UP|Q940Q8 (Q940Q8) AT5g61840/mac9_140, part...    28  4.1
AW163978                                                               28  5.3
TC14320 similar to UP|Q41111 (Q41111) Dehydrin, partial (56%)          28  5.3
TC8520 homologue to UP|Q9FZ15 (Q9FZ15) Tuber-specific and sucros...    28  5.3
BP076349                                                               27  9.1
TC9855                                                                 27  9.1

>CN825745 
          Length = 664

 Score = 80.5 bits (197), Expect = 7e-16
 Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 23/187 (12%)
 Frame = +1

Query: 197 ETIFKIGNISATVNDFDCLNPERVVEPE-------------W--------DVRMGRKIEE 235
           E +  +G   A   DFDCL P + +  +             W        DV  G  IE+
Sbjct: 55  EVLLTMGPYEAKRKDFDCLFPGQQISEKISRQQSYLLDDTIWCIPPSFVEDVYKGLSIEK 234

Query: 236 IMDTYSNDWLHPYAQLKYIYVPINAGYDHYYLMVIALSERRVYHFDSFPD-EDTSFYKQF 294
           ++  Y N ++ PY  L+YIYV +     H+YLMVI++ E  +Y+FDS  + ED       
Sbjct: 235 LVRAYFNPFMAPYHTLRYIYVLMKNDSGHWYLMVISIVEYVIYYFDSHLNVEDIPIRCAS 414

Query: 295 FMRQIRKMIQDLLALDKFSSMESNGK-VDLENWEVVELTVDGGESYMYNSPIWVMEWLSM 353
                  ++  + + +K+  M+   K VD  +W++ E  V       ++S IW++ WL M
Sbjct: 415 MRTMCDTLV*MMSSSEKYVEMDFY*KMVDFHSWQLREARVIPNTGSRHDSAIWLLSWLEM 594

Query: 354 GSSFHQN 360
           G  F  N
Sbjct: 595 GDGFSPN 615


>TC19199 
          Length = 498

 Score = 55.1 bits (131), Expect = 3e-08
 Identities = 24/34 (70%), Positives = 25/34 (72%)
 Frame = -3

Query: 543 CFGCCGCIGQDIRPCWHASGSLVVMLYGMICAYL 576
           C   C   GQDIRPCWHASGSL+VM YG  CAYL
Sbjct: 103 CRDICLNEGQDIRPCWHASGSLMVMFYGTACAYL 2



 Score = 45.4 bits (106), Expect = 2e-05
 Identities = 26/73 (35%), Positives = 33/73 (44%), Gaps = 28/73 (38%)
 Frame = -3

Query: 507 VCSFVKTRPVQEIFY-VQVFKCYKLASVQVVPR--------------------------- 538
           +CS +  +  ++ F    +FKC+KLA VQV P                            
Sbjct: 481 LCSVISMKLCEDKFRRSSMFKCFKLAFVQVSPSVVVLVCTAMHMVSIYFSQCLFGCIF*G 302

Query: 539 GVPPCFGCCGCIG 551
           GVPPCFGCCGCIG
Sbjct: 301 GVPPCFGCCGCIG 263


>TC16122 
          Length = 537

 Score = 40.4 bits (93), Expect = 8e-04
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +3

Query: 345 IWVMEWLSMGSSFHQNAKTKLNERASRMKIAVNLVGGVHNECWKELEGKVDKFW 398
           +WV   L M   F  + K  +++   RMK A++L+ G HN   + ++ K + FW
Sbjct: 6   LWVRSCLEMEVGFQPHQKGMIDDDTVRMKTAISLISGEHNALRRSVDEKANVFW 167


>BP054429 
          Length = 477

 Score = 37.0 bits (84), Expect = 0.009
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = -3

Query: 357 FHQNAKTKLNERASRMKIAVNLVGGVHNECWKELEGKVDKFWNMV----KPIG 405
           F  +    LNE A RM+ A +LV G +NE  +E+E   + FW M+     PIG
Sbjct: 463 FGSHLDGNLNEDAVRMRSATDLVSGWYNEKRREIEESSEAFWKMMIAGEAPIG 305


>BP050493 
          Length = 549

 Score = 34.7 bits (78), Expect = 0.044
 Identities = 17/69 (24%), Positives = 36/69 (51%)
 Frame = -3

Query: 235 EIMDTYSNDWLHPYAQLKYIYVPINAGYDHYYLMVIALSERRVYHFDSFPDEDTSFYKQF 294
           +++  Y +  +    +++ I++PIN    H+YL +I +  R VY  DS P       ++ 
Sbjct: 442 DLISWYKDSHMGRIDKVEKIFIPINDEAKHWYLAMIDIPXRTVYILDSLPCPSRDIARK- 266

Query: 295 FMRQIRKMI 303
             R ++K++
Sbjct: 265 --RNVQKLV 245


>CB827131 
          Length = 542

 Score = 31.6 bits (70), Expect = 0.37
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = +2

Query: 262 YDHYYLMVIALSERRVYHFDSF 283
           Y H++LMVI+L  ++V+H DS+
Sbjct: 11  YGHWFLMVISLVHQKVFHLDSY 76



 Score = 27.3 bits (59), Expect = 7.0
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = +3

Query: 314 SMESNGKVDLENWEVVE-LTVDGGESYMY---NSPIWVMEWLSMGSSFHQN 360
           S+ +N  + L++W  ++ LT      +MY   +S IW M W+ M  +F+ N
Sbjct: 348 SVVTNNILLLDSW*SIDCLT*QYLHHFMY*SKHSGIWTMHWMEMEDAFNPN 500


>TC8168 similar to UP|O04720 (O04720) Cysteine proteinase inhibitor,
           partial (55%)
          Length = 808

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 333 VDGGESYMYNSPIWVMEWLS 352
           +DGGE  +Y + +WV  WL+
Sbjct: 493 IDGGEKKIYEAKVWVKSWLN 552


>TC13866 homologue to UP|Q940Q8 (Q940Q8) AT5g61840/mac9_140, partial (28%)
          Length = 542

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 19/58 (32%), Positives = 27/58 (45%)
 Frame = +2

Query: 59  DSPKWRLDDYNIFVIDSSDDEDVPRTATHLQKQVKTEVLERQHELITPQGKSFLQFEQ 116
           D+  W  +D  +FV    D+EDVP+  T L       +L +Q  L  P  K  + F Q
Sbjct: 50  DAIPW--EDIGVFV----DEEDVPKLDTILTSIPPEIILRKQRLLANPSMKQAMLFPQ 205


>AW163978 
          Length = 443

 Score = 27.7 bits (60), Expect = 5.3
 Identities = 34/145 (23%), Positives = 61/145 (41%), Gaps = 3/145 (2%)
 Frame = +3

Query: 33  TLKEIATKVDELDLAQGCTSKANIHTDSPKWRLDDYNIFVIDSSDDEDVPRTATHLQKQV 92
           TL+ ++   D  DL        N H        DD      D +D+  +P        Q 
Sbjct: 60  TLRAMSEAKDVEDLKNSPEGDVNSHDSG-----DDLKESDKDQNDESPMP------SPQQ 206

Query: 93  KTEVLERQHELITPQGKSFLQFEQNKVFGSGKDSYQRAPKKSMEDSLARK--RLPYTP-E 149
           + E +++++  + P+    +           KD ++RA   S + +L ++    P  P E
Sbjct: 207 EEEAVKKKYGGMLPKKPPLIS----------KD-HERAYFDSADWALGKQGANKPKGPLE 353

Query: 150 AKRPKLEPNLQSHKLIKTKFKPSED 174
           A RPKL+P  Q  +  ++ + PS+D
Sbjct: 354 ALRPKLQPTHQQARSRRSAYAPSDD 428


>TC14320 similar to UP|Q41111 (Q41111) Dehydrin, partial (56%)
          Length = 1231

 Score = 27.7 bits (60), Expect = 5.3
 Identities = 17/51 (33%), Positives = 22/51 (42%)
 Frame = +3

Query: 456 QETIRIAAARKIKVDALIQTLKEEAGQEGEHAADAEREGSAENDEEHSSSS 506
           QE + +    K+KV    +  KEE   EGE       E    +D   SSSS
Sbjct: 465 QEEVIVTEFEKVKVSEEPEKKKEEVDHEGEKKHSTLLEKLHRSDSSSSSSS 617


>TC8520 homologue to UP|Q9FZ15 (Q9FZ15) Tuber-specific and
           sucrose-responsive element binding factor, partial (36%)
          Length = 1778

 Score = 27.7 bits (60), Expect = 5.3
 Identities = 12/41 (29%), Positives = 23/41 (55%)
 Frame = +2

Query: 95  EVLERQHELITPQGKSFLQFEQNKVFGSGKDSYQRAPKKSM 135
           E++   HE+I  + +S+++ +QN V   G D ++    K M
Sbjct: 884 ELMAVMHEMIRKEVRSYMEQQQNGVCFQGVDGFRNVAVKRM 1006


>BP076349 
          Length = 300

 Score = 26.9 bits (58), Expect = 9.1
 Identities = 14/36 (38%), Positives = 22/36 (60%)
 Frame = +3

Query: 108 GKSFLQFEQNKVFGSGKDSYQRAPKKSMEDSLARKR 143
           GK F + + NK+F + + S+   PKKS+E S  R +
Sbjct: 24  GK*FNKHKSNKIFPNIQSSH*P*PKKSLETSKGRPK 131


>TC9855 
          Length = 531

 Score = 26.9 bits (58), Expect = 9.1
 Identities = 14/43 (32%), Positives = 22/43 (50%)
 Frame = +3

Query: 323 LENWEVVELTVDGGESYMYNSPIWVMEWLSMGSSFHQNAKTKL 365
           L+   +VE+     + Y+Y+S  W M+   M SSF  +  T L
Sbjct: 156 LQTVSIVEVRYGFNQ*YLYSSSFWNMDSFCMTSSFDDSKCTCL 284


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,825,973
Number of Sequences: 28460
Number of extensions: 137326
Number of successful extensions: 747
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of query: 579
length of database: 4,897,600
effective HSP length: 95
effective length of query: 484
effective length of database: 2,193,900
effective search space: 1061847600
effective search space used: 1061847600
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)