TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0343.7
         (342 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP040478                                                              275  1e-74
BP051421                                                              116  5e-27
TC8086 similar to UP|DMC1_HUMAN (Q14565) Meiotic recombination p...    52  1e-07
BP044824                                                               38  0.003
TC8083 similar to UP|DMC1_LILLO (P37384) Meiotic recombination p...    34  0.041
AV408098                                                               29  1.0
BP034215                                                               28  1.7
TC18518 similar to UP|APKB_ARATH (P46573) Protein kinase APK1B  ...    26  8.5

>BP040478 
          Length = 565

 Score =  275 bits (702), Expect = 1e-74
 Identities = 143/143 (100%), Positives = 143/143 (100%)
 Frame = -1

Query: 200 TDHQSRLLLEAASMMVETRFAVMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLA 259
           TDHQSRLLLEAASMMVETRFAVMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLA
Sbjct: 565 TDHQSRLLLEAASMMVETRFAVMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLA 386

Query: 260 DEFGVAIVITNQVVSQVDGSAVFAGPQVKPIGGNIMAHATTTRLALRKGRGEERICKVIS 319
           DEFGVAIVITNQVVSQVDGSAVFAGPQVKPIGGNIMAHATTTRLALRKGRGEERICKVIS
Sbjct: 385 DEFGVAIVITNQVVSQVDGSAVFAGPQVKPIGGNIMAHATTTRLALRKGRGEERICKVIS 206

Query: 320 SPCLAEAEARFQILAEGVSDVKD 342
           SPCLAEAEARFQILAEGVSDVKD
Sbjct: 205 SPCLAEAEARFQILAEGVSDVKD 137


>BP051421 
          Length = 510

 Score =  116 bits (291), Expect = 5e-27
 Identities = 60/107 (56%), Positives = 75/107 (70%)
 Frame = -3

Query: 236 SGRGELSARQMHLAKFLRSLQKLADEFGVAIVITNQVVSQVDGSAVFAGPQVKPIGGNIM 295
           SGRGEL+ RQ  LA+ L  L K+A+EF VA+ +TNQV+S   G  VF     KP GG+++
Sbjct: 508 SGRGELAERQQKLAQMLSRLIKIAEEFNVAVYMTNQVISD-PGGGVFVTDPKKPAGGHVL 332

Query: 296 AHATTTRLALRKGRGEERICKVISSPCLAEAEARFQILAEGVSDVKD 342
           AHA T RL  RKG+GE+RICKV  +P L EAEA FQI A G++D KD
Sbjct: 331 AHAATIRLMFRKGKGEQRICKVFDAPNLPEAEAVFQITAGGIADAKD 191


>TC8086 similar to UP|DMC1_HUMAN (Q14565) Meiotic recombination protein
           DMC1/LIM15 homolog, partial (12%)
          Length = 628

 Score = 52.4 bits (124), Expect = 1e-07
 Identities = 27/54 (50%), Positives = 36/54 (66%)
 Frame = +3

Query: 223 IVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAIVITNQVVSQV 276
           IVDS  ALYR DFSG GEL+ R   LA+    L ++A+EF V+I +TN  V ++
Sbjct: 9   IVDSMIALYRVDFSGNGELAERHQKLAQIHSRLIQIAEEFNVSIYMTNPEVRKL 170


>BP044824 
          Length = 502

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 25/66 (37%), Positives = 32/66 (47%), Gaps = 1/66 (1%)
 Frame = +1

Query: 107 TGSRELDKILDGGIETGSITELYGEFRSGKTQLC-HTLCVTCQLPLDQGGGEGKAMYIDA 165
           +G   LD  L GG+  G I E++G   SGKT L  H +    +L        G AM +DA
Sbjct: 277 SGCLTLDCALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-------GGNAMLVDA 435

Query: 166 EGTFRP 171
           E  F P
Sbjct: 436 EHAFDP 453


>TC8083 similar to UP|DMC1_LILLO (P37384) Meiotic recombination protein
           DMC1 homolog, partial (23%)
          Length = 653

 Score = 33.9 bits (76), Expect = 0.041
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = +2

Query: 224 VDSATALYRTDFSGRGELSARQMH 247
           VDS  AL+R DFSG+GEL+ R+++
Sbjct: 314 VDSMIALFRVDFSGKGELAERRVY 385


>AV408098 
          Length = 231

 Score = 29.3 bits (64), Expect = 1.0
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
 Frame = +2

Query: 72  AKVDKIVEAASKLVPMGFTSASELHVQR----ESIIQITTGSRELDKILD-GGIETGSIT 126
           +K D  ++ A   +   F   S + + R    +++  + TGS  LD  L  GG+  G + 
Sbjct: 20  SKKDLALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVPTGSFALDLALGIGGLPKGRVV 199

Query: 127 ELYGEFRSGK 136
           E+YG   SGK
Sbjct: 200 EIYGPEASGK 229


>BP034215 
          Length = 524

 Score = 28.5 bits (62), Expect = 1.7
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = -1

Query: 226 SATALYRTDFSGRGELSA 243
           S  ALYR DFS RGEL+A
Sbjct: 524 SVVALYRVDFSVRGELAA 471


>TC18518 similar to UP|APKB_ARATH (P46573) Protein kinase APK1B  , partial
           (10%)
          Length = 623

 Score = 26.2 bits (56), Expect = 8.5
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 66  IKGISEAKVDKIVEAASKLVPMGFTSAS 93
           +  +S AKV  +  AASK+ P+G +S+S
Sbjct: 476 VAALSSAKVKTLKFAASKICPLGNSSSS 393


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.317    0.133    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,205,785
Number of Sequences: 28460
Number of extensions: 44189
Number of successful extensions: 227
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of query: 342
length of database: 4,897,600
effective HSP length: 91
effective length of query: 251
effective length of database: 2,307,740
effective search space: 579242740
effective search space used: 579242740
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)