TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0342b.10
         (1246 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV780705                                                              291  6e-79
TC18710                                                               231  5e-61
BP046853                                                              202  3e-52
TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, p...   195  3e-50
TC19704 weakly similar to UP|Q9SZ87 (Q9SZ87) RNA-directed DNA po...   142  2e-34
TC11350 similar to UP|Q9LJP7 (Q9LJP7) Genomic DNA, chromosome 3,...   132  3e-33
BP060613                                                              129  2e-30
AV411435                                                              124  9e-29
CN825682                                                              120  2e-27
TC19924                                                                84  2e-16
AV767121                                                               81  9e-16
CB828953                                                               53  2e-15
CN825238                                                               68  1e-11
TC19966                                                                62  6e-10
AV780221                                                               59  6e-09
CB826728                                                               46  1e-07
TC19933                                                                50  2e-06
AV780250                                                               50  2e-06
AV428268                                                               50  3e-06
AV778296                                                               49  6e-06

>AV780705 
          Length = 524

 Score =  291 bits (744), Expect = 6e-79
 Identities = 143/174 (82%), Positives = 149/174 (85%), Gaps = 1/174 (0%)
 Frame = -2

Query: 618 NLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKETLLNQAGKEVLIKAI 677
           NLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKETLLNQAGKEVLIKAI
Sbjct: 523 NLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKETLLNQAGKEVLIKAI 344

Query: 678 IQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQGKDRGIHWRS-WDKMTLSKEKGGMGF 736
           IQAIPSYAMTIVHFPKTFCNSL ALVA+FWWKSQG+    +  +   K  LSKEKGG+GF
Sbjct: 343 IQAIPSYAMTIVHFPKTFCNSLYALVADFWWKSQGEGAVEYTGAVGTK*PLSKEKGGVGF 164

Query: 737 RDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPNTSFMFAALGRNPSWMWR 790
           RDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFP  +           WMWR
Sbjct: 163 RDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPTPALCLLLWDGTHPWMWR 2


>TC18710 
          Length = 843

 Score =  231 bits (589), Expect = 5e-61
 Identities = 108/216 (50%), Positives = 150/216 (69%)
 Frame = +2

Query: 328 GPDGLNGLFFKNHWGAIKDTVCPAIKEFFLSENLSSEINETIVALIPKVDSPESVVQFRP 387
           G DG+NGLF++ +   +KD+V  AI  F     + +EINET+V LIPKV  PES+ QFRP
Sbjct: 188 GMDGMNGLFYQKNGDVVKDSVT*AILAFLERAEIPNEINETLVTLIPKVPHPESINQFRP 367

Query: 388 ISCCNYILKVISRIMVTRLKEDLDSLISPNQSAFVGGRLIQDNIVVAQEAFHLLLKGGQS 447
           IS C ++ KVIS+I V RLK+ +  LISP QS F+ GR IQDN+++ QEAFH + + G  
Sbjct: 368 ISGCTFLYKVISKIFVARLKDAMPDLISPMQSGFIQGRQIQDNLLIVQEAFHAINRPGAL 547

Query: 448 SKNYMALKVDMSKAYDRLEWTFIERTLLAYGFHPTWIDRVLTLVRGATYRLKVNGFLSPS 507
            +N+  +K+DM+KAYDR+EW F+E +LLA+GF   W+  ++ LV G +Y  K+NG + P 
Sbjct: 548 GRNHSIIKLDMNKAYDRVEWKFLESSLLAFGFSTNWVKMIMILVSGVSYNYKINGVVGPK 727

Query: 508 LIPGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQEG 543
           L+P RGLRQGDP SPYLF+   +VLS ++  +   G
Sbjct: 728 LLPQRGLRQGDPFSPYLFLFTMEVLSLLIQNSFNMG 835



 Score = 35.8 bits (81), Expect = 0.043
 Identities = 22/55 (40%), Positives = 24/55 (43%)
 Frame = +1

Query: 288 ECLHNFPKKVTQQLNNKLILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWG 342
           ECL   P  V+Q LN KL   V+  EI   V  LG L APG            WG
Sbjct: 67  ECLDVVPSLVSQDLNQKLESQVTSEEIKAVVFSLGDLTAPGHGWDEWSVLPEKWG 231


>BP046853 
          Length = 612

 Score =  202 bits (513), Expect = 3e-52
 Identities = 108/136 (79%), Positives = 108/136 (79%)
 Frame = -3

Query: 1111 PQAALGVLIRDKYSTLLSGTHAKIYCSSPLTAEACAIREGLNLAYNLGCTEVVLESDNKS 1170
            PQAALGVLIRDKYSTLLSGTHAKIYCSSPLTAEACAIREGLNLAYNLGCTEVVLESDNKS
Sbjct: 406  PQAALGVLIRDKYSTLLSGTHAKIYCSSPLTAEACAIREGLNLAYNLGCTEVVLESDNKS 227

Query: 1171 LVEACKANALIGEASTILQDIFCLKRLFHGCNFVWTNRERNKSAHLVAKACMQSLLSWNW 1230
            LVEACKANALIGEASTI                            LVAKACMQSLLSWNW
Sbjct: 226  LVEACKANALIGEASTI----------------------------LVAKACMQSLLSWNW 131

Query: 1231 LFMPPQELRRALVDDA 1246
            LFMPPQELRRALVDDA
Sbjct: 130  LFMPPQELRRALVDDA 83



 Score =  140 bits (354), Expect = 9e-34
 Identities = 68/69 (98%), Positives = 68/69 (98%)
 Frame = -1

Query: 998  EGMGPFDSWLLQRITILKRLSQDFDREFSLLASLLWSIWRGRNNSVFKAICPDPEFTIQQ 1057
            EGMGP DSWLLQRITILKRLSQDFDREFSLLASLLWSIWRGRNNSVFKAICPDPEFTIQQ
Sbjct: 612  EGMGPCDSWLLQRITILKRLSQDFDREFSLLASLLWSIWRGRNNSVFKAICPDPEFTIQQ 433

Query: 1058 ATRLLSTMD 1066
            ATRLLSTMD
Sbjct: 432  ATRLLSTMD 406


>TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, partial
           (14%)
          Length = 592

 Score =  195 bits (496), Expect = 3e-50
 Identities = 100/195 (51%), Positives = 137/195 (69%)
 Frame = -3

Query: 222 RVKWAKYGDKNSKFFHASTIQRRNRNRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHTE 281
           R+K  K GD N++FFHASTIQRR+ NRI +++D+ GIW EGQ  V  A ++++ DI+ + 
Sbjct: 590 RIK*LK*GDHNTRFFHASTIQRRDFNRILKIKDAHGIWVEGQKKVNEAAVNYFSDIYSSS 411

Query: 282 GVSQIEECLHNFPKKVTQQLNNKLILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHW 341
            +  + ECL   PK VT +LN+KL   VS  EI EAV  +G LKAPG DG+NGLF++ + 
Sbjct: 410 PLQYLRECLAPIPKLVTDRLNHKLCAQVSTDEIKEAVFSMGDLKAPGMDGINGLFYQQNR 231

Query: 342 GAIKDTVCPAIKEFFLSENLSSEINETIVALIPKVDSPESVVQFRPISCCNYILKVISRI 401
             +K+ V  AI +FF    L  E+NET+V LIPK+   E++ QFRPISCC++I KVIS+I
Sbjct: 230 EIVKNDVNNAILDFFDHGELPVELNETLVTLIPKIPHAEAIQQFRPISCCSFIYKVISKI 51

Query: 402 MVTRLKEDLDSLISP 416
           +V RLK D+ +LISP
Sbjct: 50  IVARLKPDMVNLISP 6


>TC19704 weakly similar to UP|Q9SZ87 (Q9SZ87) RNA-directed DNA
           polymerase-like protein, partial (3%)
          Length = 530

 Score =  142 bits (359), Expect = 2e-34
 Identities = 70/177 (39%), Positives = 101/177 (56%), Gaps = 2/177 (1%)
 Frame = -3

Query: 128 QCKGIVTQGWNRP--TLHDDCWINLSNRIQSSKQNLWS*QKRTFRAADKEIVRLKQEMHR 185
           +CK  + + W+    T    C  NLS +  ++K  L     + F  ADKEI  LK ++  
Sbjct: 528 ECKETIKKAWDNTSETASSHC-SNLSGKTTNTKLALTEWHHQNFSRADKEIAELKNQLEH 352

Query: 186 MEERPNHLVDWAGVRVIKLKIDTLWRQEELYWGQRSRVKWAKYGDKNSKFFHASTIQRRN 245
           ++   N   DW  ++  K+++  LWRQEEL+W QRSR+KW K GDKN+KFFHAST+QRR 
Sbjct: 351 LQNYSNSGEDWQEIKQRKMRLKDLWRQEELFWSQRSRIKWLKSGDKNTKFFHASTVQRRE 172

Query: 246 RNRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHTEGVSQIEECLHNFPKKVTQQLN 302
           RNRI+R++D  G W   Q  +       Y DI+ +     I ECL+  P+ + + LN
Sbjct: 171 RNRIERIKDMQGTWVRSQLAINRDVPDFYPDIYKSTNRQNITECLNAVPRVIYESLN 1


>TC11350 similar to UP|Q9LJP7 (Q9LJP7) Genomic DNA, chromosome 3, P1 clone:
            MIG10, partial (18%)
          Length = 1118

 Score =  132 bits (332), Expect(2) = 3e-33
 Identities = 75/199 (37%), Positives = 111/199 (55%), Gaps = 6/199 (3%)
 Frame = -3

Query: 986  WFGSSLQWIVTLEGMGPFDSWLLQRITILKRLSQDFDREFSLLASLLWSIWRGRNNSVFK 1045
            WFGS LQW +   G   FD W ++R   +   S + + + + L+  LW+IW+ RN  +F+
Sbjct: 1116 WFGSPLQWSIEPGGNLRFDRWFVERSQFILNHSLNHEEDLATLSFTLWAIWKNRNRVIFQ 937

Query: 1046 AICPDPEFTI------QQATRLLSTMDLAKPVKEDRIIESIQSQRTRASDWIPPEGNSLK 1099
               P+P  TI      QQ   L+ST    K    +R I ++ S R R+  W PP     K
Sbjct: 936  LEEPNPVNTIFQIRHMQQDANLMSTSQSNKQTTRERNI-NVTSARDRS--WRPPPLGVYK 766

Query: 1100 INVDASWVENLPQAALGVLIRDKYSTLLSGTHAKIYCSSPLTAEACAIREGLNLAYNLGC 1159
            +N DASW    P   +GV+IRD    L+SGT ++    SP+ +EA A+REGL LA +LG 
Sbjct: 765  LNSDASWKAPSPSCTVGVVIRDNLGLLISGTASRPLAPSPIVSEALALREGLILARSLGL 586

Query: 1160 TEVVLESDNKSLVEACKAN 1178
              ++ ESD + L+EAC+++
Sbjct: 585  DRILSESDCQPLIEACRSS 529



 Score = 27.7 bits (60), Expect(2) = 3e-33
 Identities = 14/34 (41%), Positives = 17/34 (49%)
 Frame = -1

Query: 1212 KSAHLVAKACMQSLLSWNWLFMPPQELRRALVDD 1245
            K   LVA+   Q  L  NW++ PP  L  AL  D
Sbjct: 545  KLVDLVAQLEFQGSLMRNWVYTPPHSLAVALAKD 444


>BP060613 
          Length = 378

 Score =  129 bits (325), Expect = 2e-30
 Identities = 53/108 (49%), Positives = 77/108 (71%)
 Frame = +1

Query: 707 WWKSQGKDRGIHWRSWDKMTLSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVM 766
           WW S+G  RG+HWR WD +T  K++GG+GF+D   QN A LA+QAWR+L NP+ALWV+++
Sbjct: 46  WWSSKGT-RGVHWRKWDLLTELKDEGGLGFKDFEIQNQALLAKQAWRILHNPDALWVQIL 222

Query: 767 KSLYFPNTSFMFAALGRNPSWMWRSLLAGRDFISRYSRWVVGDGKSVQ 814
           K+LYFP+  F+        SW+W SLL GR+ + +  +W +G G++VQ
Sbjct: 223 KALYFPHHDFLQTTKRTGASWVWSSLLHGRELLLKQGQWQLGSGETVQ 366


>AV411435 
          Length = 426

 Score =  124 bits (311), Expect = 9e-29
 Identities = 60/142 (42%), Positives = 84/142 (58%), Gaps = 1/142 (0%)
 Frame = +3

Query: 866  ILQTPVSKFNQADVIFWPHTPRGDYTVNSGFRVARNNTIITQTHSSSSHVISEDLWNTIW 925
            I+QTP S     D +FWP  P G+Y+V SG+R  +         +SSS   S  LW+TIW
Sbjct: 3    IMQTPFSITGSEDRLFWPFIPSGEYSVKSGYRAVKATQFNLSNLASSSSHPSSFLWHTIW 182

Query: 926  SSHVPQKVKVFLWKASHNSLAVKYNLWRKRISPSGQCPVCCDSLETVEHLFLVCPWTRAV 985
             + VP+KV+ FLW+A++N++ VK NL R+ +     CP+C    E + H  L C WTRAV
Sbjct: 183  GAQVPKKVRSFLWRAANNAIPVKRNLKRRNMGRDDFCPICNKGPEDINHALLACEWTRAV 362

Query: 986  WFGSSLQWIV-TLEGMGPFDSW 1006
            WFG  L ++V  + GM  F +W
Sbjct: 363  WFGCPLNFVVHEVHGM-LFGAW 425


>CN825682 
          Length = 626

 Score =  120 bits (300), Expect = 2e-27
 Identities = 56/97 (57%), Positives = 72/97 (73%)
 Frame = -3

Query: 6   TPWCLIGDFNDILYAHEKEGIRPQAPSVLQRFREFVHCSGLMDVALKGNRFTWQSNPRDG 65
           T W   GDFN+IL+  EKEG R Q P+ +Q FR+F+  + LMD+ LKG RFTW SN R+G
Sbjct: 306 TFWTCYGDFNEILHHQEKEGARDQDPTRIQVFRDFLDGANLMDLELKGCRFTWLSNLRNG 127

Query: 66  FVTREKLDRVLANWAWRDLFPNASALAYPQVTSDHSP 102
            VT+E+LDRVL NW WR  +PNA+A+A P ++SDHSP
Sbjct: 126 LVTKERLDRVLVNWTWRLDYPNATAMALPIISSDHSP 16


>TC19924 
          Length = 525

 Score = 83.6 bits (205), Expect = 2e-16
 Identities = 46/112 (41%), Positives = 61/112 (54%)
 Frame = -2

Query: 950  NLWRKRISPSGQCPVCCDSLETVEHLFLVCPWTRAVWFGSSLQWIVTLEGMGPFDSWLLQ 1009
            NL ++R+  S  CP+C  + ETVEH    C  TR V  GS  QW         FDS LL 
Sbjct: 344  NLHKRRVLNSPLCPICFAAPETVEHAIFHCNGTRLVGLGSQFQW--NTSDASRFDSGLLS 171

Query: 1010 RITILKRLSQDFDREFSLLASLLWSIWRGRNNSVFKAICPDPEFTIQQATRL 1061
            +I  L+   ++F +E S L  LLW IW+ RN +VF+   PDP  T+ +A  L
Sbjct: 170  KIECLRLREENFVQECSSLGCLLWEIWKTRNITVFEGKLPDPTGTLIRAQAL 15


>AV767121 
          Length = 525

 Score = 81.3 bits (199), Expect = 9e-16
 Identities = 50/173 (28%), Positives = 83/173 (47%), Gaps = 5/173 (2%)
 Frame = +2

Query: 657 LEGWKETLLNQAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQGKDRG 716
           L  WK+  ++  G+  LI++++ A+P + ++    P     S   L+ NF W     +  
Sbjct: 2   LSKWKQKTVSFGGRIFLIQSVLTALPLFFLSFFKLPIGVGKSCVRLMRNFLWGGSENENK 181

Query: 717 IHWRSWDKMTLSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPNTSF 776
           I    W  +   KE GG+G +DL T N A L +  WR LT P++LW RV+++   P+   
Sbjct: 182 IA*VKWTDVCKPKELGGLGIKDLFTFNKALLGK*RWRYLTEPDSLWRRVIEAQ--PD--- 346

Query: 777 MFAALGRNPSWMWRSLLA-----GRDFISRYSRWVVGDGKSVQVWGDNWLSSG 824
                    SW W  +L+        + S   + +VG+G   + W ++WL SG
Sbjct: 347 ---HYSCGSSW-WNDILSLCPEDADGWFSSGLKKLVGEGDQTKFWSEDWLGSG 493


>CB828953 
          Length = 554

 Score = 53.1 bits (126), Expect(2) = 2e-15
 Identities = 30/76 (39%), Positives = 40/76 (52%)
 Frame = -2

Query: 1171 LVEACKANALIGEASTILQDIFCLKRLFHGCNFVWTNRERNKSAHLVAKACMQSLLSWNW 1230
            LVEAC+     GE  +I+ DI  L+R F  C F W  R  NK AH +AK    + L   W
Sbjct: 388  LVEACRDGKGQGEIHSIVADILNLRRHFQWCGFSWIPRNSNKVAHEIAKLNYLNDLGPYW 209

Query: 1231 LFMPPQELRRALVDDA 1246
            LF     ++ A++ DA
Sbjct: 208  LFSLHPAVKSAVIHDA 161



 Score = 47.0 bits (110), Expect(2) = 2e-15
 Identities = 20/51 (39%), Positives = 32/51 (62%)
 Frame = -3

Query: 1090 WIPPEGNSLKINVDASWVENLPQAALGVLIRDKYSTLLSGTHAKIYCSSPL 1140
            W PP    LK+NVDASW  + P  ++G+ +RD+   L++G+ +K +  S L
Sbjct: 540  WRPPLPRMLKLNVDASWKASSPLCSIGIAVRDEAGLLVAGSASKAFSHSAL 388


>CN825238 
          Length = 692

 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 39/136 (28%), Positives = 63/136 (45%), Gaps = 1/136 (0%)
 Frame = +3

Query: 841 LISPNGEGWNDNLIKGLFQPELAIKILQTPVSKFNQADVIFWPHTPRGDYTVNSGFRVAR 900
           L+ PN   WN  LI  LF  E A  I   P+      +   W  +  G ++V S +    
Sbjct: 297 LLIPNARRWNVQLIDQLFPKETAAVIKSIPLGWRTTRNSCLWRWSRNGAFSVRSAY---- 464

Query: 901 NNTIITQTHSSSSHVISEDLWNTIWSSHVPQKVKVFLWKASHNSLAVKYNLWRKRISPSG 960
            N  + +   +SS   S   W  +W + VP K+K F ++ + N +  + NL R+ I+   
Sbjct: 465 YNIQVAKEMQTSSSAASSFPWKKLWRTPVPNKMKHFAYRVARNIIPCRENLQRRGIAVQN 644

Query: 961 QCPVCCDSL-ETVEHL 975
           +CP C   + E++ HL
Sbjct: 645 ECPTCNHQIPESMSHL 692


>TC19966 
          Length = 522

 Score = 62.0 bits (149), Expect = 6e-10
 Identities = 29/47 (61%), Positives = 40/47 (84%)
 Frame = -2

Query: 1111 PQAALGVLIRDKYSTLLSGTHAKIYCSSPLTAEACAIREGLNLAYNL 1157
            P+A++G +IRDK++TLL+G+ +K++ SSPLT EA AIREGL LA NL
Sbjct: 149  PRASVGAVIRDKFATLLAGSSSKVFASSPLTTEAQAIREGLILALNL 9


>AV780221 
          Length = 461

 Score = 58.5 bits (140), Expect = 6e-09
 Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 7/156 (4%)
 Frame = +3

Query: 673 LIKAIIQAIPSYAMTIVHFPKT-FCNSLNALVANFWWKSQGKDRGIHWRSWDKMTLSKEK 731
           LI++++ A+P + +     P   F  ++N     F+ +     + I W  W  +   K++
Sbjct: 9   LIRSVLIALPLFHLPFFKLPTGGFYTNVNN**DPFFGREVEGGKKIAWVKWSTVCRPKDE 188

Query: 732 GGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPNTSFMFAALGRNPSWMWRS 791
           GG+G ++L   N A L +  WR+L   + LW +V+   Y         A+ ++ S  W  
Sbjct: 189 GGLGVQNLGLFNKALLGKWRWRMLKERDGLWYKVLLIKY-------KNAIPQSASSWWND 347

Query: 792 LLA------GRDFISRYSRWVVGDGKSVQVWGDNWL 821
           L +      G  ++ R     +G+G  V+ W +NWL
Sbjct: 348 LHSTCFEDGGGGWMQRGLCRRIGEGTEVKFWNENWL 455


>CB826728 
          Length = 509

 Score = 45.8 bits (107), Expect(2) = 1e-07
 Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
 Frame = +1

Query: 879 VIFWPHTPRGDYTVNSGFRVAR--NNTIITQTHSSSSHVISEDLWNTIWSSHVPQKVKVF 936
           V FWP +  G Y+  SG+   R  N +++  T  S +  +   +W T+WS+    + K  
Sbjct: 205 VFFWPGSSDGWYSSKSGYEFIRLENKSLLPST--SPAAAVPSLIWKTVWSASSLPRCKEV 378

Query: 937 LWKASHNSLAVKYNLWRKRISPSGQCPVCCDSLETVEHLFLVC 979
           +W+A    L V+  L R+ +      P      E   H+ L C
Sbjct: 379 MWRACAGYLPVRSALKRRGLDVDPSSPWSGLEDEAEVHVLLTC 507



 Score = 28.1 bits (61), Expect(2) = 1e-07
 Identities = 23/68 (33%), Positives = 32/68 (46%), Gaps = 4/68 (5%)
 Frame = +3

Query: 818 DNWLSSGEALVKPINA-ADL---KVSDLISPNGEGWNDNLIKGLFQPELAIKILQTPVSK 873
           D WL +   LV   +   DL   KV+DLI  NG  WN+NL+  +F P      L   +  
Sbjct: 15  DAWLPNSAPLVYCEDLFVDLQLKKVADLIE-NGR-WNENLVSMVFSPSTTAVFLAVSLPL 188

Query: 874 FNQADVIF 881
            +  D +F
Sbjct: 189 QSYEDCLF 212


>TC19933 
          Length = 472

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
 Frame = -3

Query: 913 SHVISEDLWNTIWSS----HVPQKVKVFLWKASHNSLAVKYNLWRKRISPSGQCPVC 965
           SH + +   N+ WSS     V  KVK FLWK  HN++ +K NL R+  +  G+CP+C
Sbjct: 179 SHNVEQSPLNSWWSSI*KAKVSNKVKHFLWKLCHNAIPLKGNLRRRGCATDGKCPIC 9


>AV780250 
          Length = 494

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 29/110 (26%), Positives = 47/110 (42%)
 Frame = +3

Query: 878 DVIFWPHTPRGDYTVNSGFRVARNNTIITQTHSSSSHVISEDLWNTIWSSHVPQKVKVFL 937
           DV+ WPHT  G+YT  SG+ V RN  +     SS++  +S      +W +    + +  +
Sbjct: 174 DVLAWPHTSNGEYTSKSGYAVVRNKVVHALPSSSTALQVSP----VVWKAPTLPRCRELI 341

Query: 938 WKASHNSLAVKYNLWRKRISPSGQCPVCCDSLETVEHLFLVCPWTRAVWF 987
            +A    L  +  L  + +     CP C    E+   + L  P     WF
Sbjct: 342 GRAFLKILPTRSALRARGMDVDELCPSCETHRESPAQVLLFVPVVSKWWF 491


>AV428268 
          Length = 429

 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 35/126 (27%), Positives = 58/126 (45%), Gaps = 2/126 (1%)
 Frame = +3

Query: 918  EDLWNTIWSSHVPQKVKVFLWKASHNSLAVKYNLWRKRISPSGQCPVCCDSLETVEHLFL 977
            ++++  +WS  VP       WK   N +  K NL R+ +  S  CP+C    E+ +HL  
Sbjct: 60   DNIFKLLWSVKVPSNAIALSWKVLINRVQTKVNLNRRGVVISNVCPLCSLDEESTDHLLF 239

Query: 978  VCPWTRAVWFGSSLQWIVTLEGMGPFDS--WLLQRITILKRLSQDFDREFSLLASLLWSI 1035
             CP    +W  S +     +  + P DS    LQ +     L+      F  +A+++  I
Sbjct: 240  SCPIV*RIW--SKISE*FGVFSVFPNDSHGHFLQHLGSCGSLNFRKRGWFVWIAAVV-CI 410

Query: 1036 WRGRNN 1041
            W+GRN+
Sbjct: 411  WQGRNS 428


>AV778296 
          Length = 408

 Score = 48.5 bits (114), Expect = 6e-06
 Identities = 20/29 (68%), Positives = 24/29 (81%)
 Frame = +3

Query: 60  SNPRDGFVTREKLDRVLANWAWRDLFPNA 88
           S P  GFVTREK++RV+A+W WR LFPNA
Sbjct: 144 SKPGGGFVTREKIERVVADWEWRALFPNA 230



 Score = 32.3 bits (72), Expect = 0.47
 Identities = 23/77 (29%), Positives = 37/77 (47%), Gaps = 5/77 (6%)
 Frame = +1

Query: 72  LDRVLANWAWR----DLFP-NASALAYPQVTSDHSPILLNPLSPSRSKTPFKYEVFWDEH 126
           L+R L+ W W+    +L+     A AYP ++SDHSP++  P   S   +P +    W   
Sbjct: 169 LERRLSGW-WQTGNGELYSLMLKATAYPPISSDHSPMVFEPSPKSV*WSPIQIRAGWG*T 345

Query: 127 EQCKGIVTQGWNRPTLH 143
            + +    QG  R + H
Sbjct: 346 CRMQRSNQQGMGRNSRH 396


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.136    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,404,935
Number of Sequences: 28460
Number of extensions: 393182
Number of successful extensions: 1930
Number of sequences better than 10.0: 86
Number of HSP's better than 10.0 without gapping: 1894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1915
length of query: 1246
length of database: 4,897,600
effective HSP length: 101
effective length of query: 1145
effective length of database: 2,023,140
effective search space: 2316495300
effective search space used: 2316495300
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)