TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0342a.5
         (1069 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC12566 similar to UP|Q84XI1 (Q84XI1) RCa1 (Fragment), partial (...   188  3e-51
AV409408                                                              140  1e-33
AV406755                                                              129  2e-30
CB828263                                                              122  3e-28
TC10987                                                               116  2e-26
AV410283                                                              112  3e-25
AV770426                                                              108  4e-24
AV768725                                                              106  2e-23
TC19146 similar to UP|Q8S4X3 (Q8S4X3) TIR-similar-domain-contain...    99  3e-21
BP064315                                                               97  1e-20
AV779547                                                               93  2e-19
TC13186 weakly similar to UP|Q8W2C0 (Q8W2C0) Functional candidat...    91  1e-18
TC13833                                                                84  1e-16
BP065014                                                               82  4e-16
BP045440                                                               82  4e-16
AV778571                                                               75  7e-14
TC9932 weakly similar to UP|Q93YA7 (Q93YA7) Resistance gene-like...    70  2e-12
TC18765 weakly similar to UP|Q9LVT1 (Q9LVT1) Disease resistance ...    63  2e-10
TC18755 similar to UP|AAN85378 (AAN85378) Resistance protein (Fr...    63  3e-10
BP065724                                                               59  5e-09

>TC12566 similar to UP|Q84XI1 (Q84XI1) RCa1 (Fragment), partial (28%)
          Length = 918

 Score =  188 bits (478), Expect(2) = 3e-51
 Identities = 98/225 (43%), Positives = 144/225 (63%)
 Frame = +1

Query: 331 ADYVYTMKEMDEDESLELFSWHAFGEASPREDFNELSRRVVAYCGGLPLALEVLGSYLNE 390
           AD +Y +KEM  ++SL+LFS +AF    P E + +LS+++++Y  G+PLAL+VLG +L  
Sbjct: 1   ADEIYEVKEMSFEDSLQLFSLNAFKRNDPLETYIDLSKKLLSYAKGIPLALKVLGLFLYG 180

Query: 391 REEIEWESVLSKLERIPNDQVQQKLRISYDGLKDELEKDIFLDICCFFVGKDRAYVTDIL 450
           RE   WES L KLE++P+ ++   L++SYDGL D+ +KDIFLDI CF++G     V   L
Sbjct: 181 RERKAWESQLVKLEKLPDPEIINVLKLSYDGLDDD-QKDIFLDIACFYLGHLEESVAQTL 357

Query: 451 NGCGLYADIGITLLIERSLLQVEKNNKLGMHDLVRDMGRAIVRESSTKDLGKRSRLWFHE 510
           + CG +ADIG+ +L +R L+ +    ++ MHDL+  MG+ IVR+    D GKRSRLW  +
Sbjct: 358 DSCGFFADIGMEVLKDRCLISI-LEGRIVMHDLIEVMGKEIVRQQCPNDPGKRSRLWNDD 534

Query: 511 DVHDVLTKNTGTETVEGLILKLQSTSRVCFSTNAFKEMRKLRLLQ 555
             +DVL KN GT+ ++ + L       V      FK M  LR+LQ
Sbjct: 535 QTYDVLGKNKGTDAIQCIFLYTCPIKIVNLHAETFKYMTNLRMLQ 669



 Score = 32.0 bits (71), Expect(2) = 3e-51
 Identities = 15/51 (29%), Positives = 29/51 (56%)
 Frame = +2

Query: 568 LSHELKWVYWKGFTSTYIPDHFYLGNLVVLELKYSSVKQVWKETKLLEKLK 618
           L + L+++ W GF   Y P  F   NLV L+++ S ++   ++ ++ + LK
Sbjct: 734 LPNHLQFLRWDGFPLRYFPLDFCPQNLVKLDMRDSHLEHFGRKIRIYQTLK 886


>AV409408 
          Length = 430

 Score =  140 bits (353), Expect = 1e-33
 Identities = 74/145 (51%), Positives = 97/145 (66%)
 Frame = +2

Query: 375 GGLPLALEVLGSYLNEREEIEWESVLSKLERIPNDQVQQKLRISYDGLKDELEKDIFLDI 434
           GGLPLALEVLGS+L  R   +WE  L K++++P+D +  KLRISYD L+DE  K +FLDI
Sbjct: 2   GGLPLALEVLGSFLCGRSLSDWEDALIKIKKVPHDDILNKLRISYDMLEDE-HKTLFLDI 178

Query: 435 CCFFVGKDRAYVTDILNGCGLYADIGITLLIERSLLQVEKNNKLGMHDLVRDMGRAIVRE 494
            CFF G  +  V  +L  CGL+  +GI +LIE+SLL  +    +GMHDL+ +MG+  V  
Sbjct: 179 ACFFKGWYKHKVIQLLGSCGLHPTVGINVLIEKSLLTFD-GRVIGMHDLLEEMGKTEVFL 355

Query: 495 SSTKDLGKRSRLWFHEDVHDVLTKN 519
            S  D G+RSRLW  ED+  VL KN
Sbjct: 356 ESPNDPGRRSRLWSLEDIDQVLRKN 430


>AV406755 
          Length = 425

 Score =  129 bits (324), Expect = 2e-30
 Identities = 59/101 (58%), Positives = 81/101 (79%)
 Frame = +3

Query: 18  GEDTRHSFVSHLYAALSNAGINVFLDDEKLKKGSELKPALLRAIEGSRISLAVLSSNYAS 77
           GE++R SF SHLY AL NAGI VF+D+E L++G ++  +LL+AIE SRI++ + S+NY  
Sbjct: 108 GEESRRSFTSHLYTALKNAGIKVFMDNE-LQRGEDISSSLLKAIEDSRIAIIIFSTNYTG 284

Query: 78  SRWCLDELVKILECRRTYGQLVIPLFYHVDPSHVRNQKGPV 118
           S+WCLDEL KI+EC+RT GQ V+P+FY+VDPS +R Q+G V
Sbjct: 285 SKWCLDELEKIIECQRTIGQEVMPVFYNVDPSDIRKQRGTV 407



 Score = 33.9 bits (76), Expect = 0.14
 Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 23/92 (25%)
 Frame = +3

Query: 475 NNKLGMHDLVRDMGRAIV----RESSTKDL-----GKRSRLWFHEDVHDVLTKNTGT--- 522
           NNKL MHDL+++MGR I+    +   + D+     G+ SR  F   ++  L KN G    
Sbjct: 3   NNKLQMHDLLKEMGRGIIVKKPKSKWSYDVFLSFRGEESRRSFTSHLYTAL-KNAGIKVF 179

Query: 523 --------ETVEGLILKLQSTSRVC---FSTN 543
                   E +   +LK    SR+    FSTN
Sbjct: 180 MDNELQRGEDISSSLLKAIEDSRIAIIIFSTN 275


>CB828263 
          Length = 570

 Score =  122 bits (306), Expect = 3e-28
 Identities = 63/126 (50%), Positives = 87/126 (69%), Gaps = 1/126 (0%)
 Frame = +2

Query: 47  LKKGSELKPALLRAIEGSRISLAVLSSNYASSRWCLDELVKILECRRTYGQLVIPLFYHV 106
           L++G E+  +LLRAIE +++S+ V S NY +S+WCLDELVKILEC+RT GQ+V+P+FY +
Sbjct: 8   LQRGDEISSSLLRAIEEAKLSVIVFSKNYGNSKWCLDELVKILECKRTRGQIVLPVFYDI 187

Query: 107 DPSHVRNQKGPVL-LLGKQLQVEDTQRKTRRGGHEVASFSGYNLSPDRSEAEAINEIVKN 165
           DPSHVRNQ G       K  QV+  Q K R    E A+ SG++ S +R E+E I +I K+
Sbjct: 188 DPSHVRNQTGTYAEAFVKHGQVDKVQ-KWREALREAANLSGWDCSVNRMESEVIEKIAKD 364

Query: 166 VFRNLD 171
           V   L+
Sbjct: 365 VLEKLN 382


>TC10987 
          Length = 601

 Score =  116 bits (291), Expect = 2e-26
 Identities = 55/55 (100%), Positives = 55/55 (100%)
 Frame = +1

Query: 1015 EVEFEPSANEKMEPSSEVNMQPSPDLKMEPSPKPTKNIFTRIAKRIGKCSCLNQN 1069
            EVEFEPSANEKMEPSSEVNMQPSPDLKMEPSPKPTKNIFTRIAKRIGKCSCLNQN
Sbjct: 1    EVEFEPSANEKMEPSSEVNMQPSPDLKMEPSPKPTKNIFTRIAKRIGKCSCLNQN 165


>AV410283 
          Length = 426

 Score =  112 bits (280), Expect = 3e-25
 Identities = 56/138 (40%), Positives = 87/138 (62%)
 Frame = +1

Query: 254 QEQLLSDVLKTKEKIHSIGRGTAMIKKILSGKRALVILDDVTTSEQLRALCGNREWFASG 313
           Q ++L D L +   ++ +  G + IK++L G + L+ILDDV   +QL  L GNREWF  G
Sbjct: 1   QNRILGD-LSSGGTVNDVNDGVSAIKRVLQGNKVLLILDDVDEIQQLDFLMGNREWFHKG 177

Query: 314 SVIIVTTRDVRLLNSLKADYVYTMKEMDEDESLELFSWHAFGEASPREDFNELSRRVVAY 373
           S +++TTR+ ++L     D  Y ++E++   +L LF  HA     P E F+ LS+++V  
Sbjct: 178 SRVVITTRNTQVLPESYVDMFYEVRELELSAALALFCHHAMRRKKPAEGFSNLSKQIVKK 357

Query: 374 CGGLPLALEVLGSYLNER 391
            GGLPLALEV+GS+L ++
Sbjct: 358 TGGLPLALEVIGSFLFDK 411


>AV770426 
          Length = 517

 Score =  108 bits (270), Expect = 4e-24
 Identities = 54/90 (60%), Positives = 69/90 (76%)
 Frame = +3

Query: 672 CTSLNNLPGKTYQLKSVKTLIISGCSKIDKLEEDIAQMESLTTLIAKDTAIKEVPYSILG 731
           C S +      Y+ KS+K+L++SGCSKIDK+EEDI QMESLT L A DTAI +VP S++ 
Sbjct: 12  CKSSSTSQESVYKSKSLKSLVLSGCSKIDKMEEDIMQMESLTNLEADDTAITQVPDSLMR 191

Query: 732 LKSIGYISLCGYEGLSRDVFPSLLRSWISP 761
           LK+I ++SLCGYEGLS  VFPSL+ S +SP
Sbjct: 192 LKNIKHVSLCGYEGLSSHVFPSLILSLMSP 281


>AV768725 
          Length = 542

 Score =  106 bits (264), Expect = 2e-23
 Identities = 55/117 (47%), Positives = 75/117 (64%)
 Frame = -1

Query: 888  GGDDPYWLAYKGEGPSVHFQVPEDRDCCLKGIVLCVVYSSTPENMATECLTSVMINNHTK 947
            GG    W  +KGEG SV FQ+PED     KGI LC+VYSS+  NMA + L +V+I NHTK
Sbjct: 461  GGQYSNWRTFKGEGSSVLFQMPEDVGHKFKGIALCIVYSSSHANMAYKYLRNVLIINHTK 282

Query: 948  FTIQIYKQGTVMSFNDEDWESVKSNLDPGDDTEIVVSFGRGLTVKETAVYLIYAQSI 1004
             TIQ++ +  + S   ++W+ + S+L+PGD  +IVV FG   TV  T   L+Y +SI
Sbjct: 281  ATIQLHIREVLTSPKVKEWKFIMSDLNPGDKVKIVVVFGGEFTVDTTTANLVYVESI 111


>TC19146 similar to UP|Q8S4X3 (Q8S4X3) TIR-similar-domain-containing protein
           TSDC, partial (12%)
          Length = 701

 Score = 99.4 bits (246), Expect = 3e-21
 Identities = 58/141 (41%), Positives = 80/141 (56%), Gaps = 5/141 (3%)
 Frame = +1

Query: 29  LYAALSNAGINVFLDDEKLKKGSELKPALLRAIEGSRISLAVLSSNYASSRWCLDELVKI 88
           LY AL   G   F+DDE L  G+E+  +LL A E SR+S+ V S NY  S WCLDELVKI
Sbjct: 1   LYHALRREGFKTFMDDEGLVGGNEIAKSLLDASEKSRLSIIVFSENYGYSSWCLDELVKI 180

Query: 89  LECRRTYGQLVIPLFYHVDPSHVRNQKGPV--LLLGKQLQV---EDTQRKTRRGGHEVAS 143
           +EC  T  QLV P+FY V+ S V +Q+      ++G +       D  +K R     +A 
Sbjct: 181 VECMETKKQLVWPIFYKVEKSDVTSQENSYEHAMIGHEKNYGKDSDEVKKWRSALSAMAK 360

Query: 144 FSGYNLSPDRSEAEAINEIVK 164
             G+N+  ++ E E I +IV+
Sbjct: 361 LEGHNVKENKYEYEFIKKIVE 423


>BP064315 
          Length = 350

 Score = 97.4 bits (241), Expect = 1e-20
 Identities = 52/112 (46%), Positives = 72/112 (63%), Gaps = 4/112 (3%)
 Frame = +1

Query: 264 TKEKIHSIGRGTAMIKKILSGKRALVILDDVTTSEQLRALCGNREWFASGSVIIVTTRDV 323
           T+  + S  RG   IK+ LS KR L++LDDV   +QL+AL G  +WF SGS II+TTRD 
Sbjct: 13  TETMMGSTFRGDFEIKRRLSNKRVLLVLDDVDKIKQLQALAGGGDWFGSGSRIIITTRDT 192

Query: 324 RLLNSLKADYV----YTMKEMDEDESLELFSWHAFGEASPREDFNELSRRVV 371
            +L+  K D V    Y M+E+++ +SLELF WHAF  ++P E+F  +S   V
Sbjct: 193 TMLDKHKMDDVIMKKYKMEELNDHDSLELFCWHAFNMSTPAENFEGVSSHAV 348


>AV779547 
          Length = 556

 Score = 93.2 bits (230), Expect = 2e-19
 Identities = 56/138 (40%), Positives = 77/138 (55%), Gaps = 5/138 (3%)
 Frame = +1

Query: 18  GEDTRHSFVSHLYAALSNAGINVFLDDEKLKKGSELKPALLRAIEGSRISLAVLSSNYAS 77
           GEDTR++F  HL  AL   G   F DD  L+KG  +   L++AIEGS+I + V S  YAS
Sbjct: 121 GEDTRNNFTDHLLGALYGKGFVTFKDDTMLRKGKNISTELIQAIEGSQILIVVFSKYYAS 300

Query: 78  SRWCLDELVKILECRRTYGQLVIPLFYHVDPSHVRNQK---GPVLLLGKQLQVEDTQ--R 132
           S WCL EL KI +      Q V+P+   V PS VR Q    G   L  ++   ED +  +
Sbjct: 301 STWCLQELAKIADGIVGKRQTVLPVVCDVTPSEVRKQSGNYGEAFLKHEERFKEDLEMVQ 480

Query: 133 KTRRGGHEVASFSGYNLS 150
           + R+   EVA  SG++++
Sbjct: 481 RWRKALAEVADLSGWDVT 534


>TC13186 weakly similar to UP|Q8W2C0 (Q8W2C0) Functional candidate
           resistance protein KR1, partial (6%)
          Length = 586

 Score = 90.5 bits (223), Expect = 1e-18
 Identities = 48/97 (49%), Positives = 62/97 (63%)
 Frame = +1

Query: 20  DTRHSFVSHLYAALSNAGINVFLDDEKLKKGSELKPALLRAIEGSRISLAVLSSNYASSR 79
           DTR  F   LY ALS+ GI  F+DD   +    +     +AIE SRI++ V+S NYASS 
Sbjct: 133 DTRFGFSGDLYTALSDKGILTFIDDGLPRPDDIMSTVNSKAIESSRIAIVVISENYASSS 312

Query: 80  WCLDELVKILECRRTYGQLVIPLFYHVDPSHVRNQKG 116
           +CLDEL+ IL+ R   G L+ P+FY V+PS VR QKG
Sbjct: 313 FCLDELMYILKRREEKGLLIWPVFYQVEPSDVRYQKG 423


>TC13833 
          Length = 646

 Score = 84.0 bits (206), Expect = 1e-16
 Identities = 39/88 (44%), Positives = 61/88 (69%), Gaps = 1/88 (1%)
 Frame = +1

Query: 917  KGIVLCVVYSSTPENMATEC-LTSVMINNHTKFTIQIYKQGTVMSFNDEDWESVKSNLDP 975
            KG+ L ++YSS+ +N+A+EC L SV + N+T  TI +Y +    S +DE+W+ + S+L P
Sbjct: 7    KGVTLHIIYSSSLDNLASECDLISVSMINYTNDTIHLYLRDQTTSVDDEEWQGLMSSLGP 186

Query: 976  GDDTEIVVSFGRGLTVKETAVYLIYAQS 1003
            GD+ E+V+ FG    VK+T V+LIY +S
Sbjct: 187  GDEVEVVIVFGHRFVVKKTIVHLIYGES 270


>BP065014 
          Length = 498

 Score = 82.0 bits (201), Expect = 4e-16
 Identities = 39/76 (51%), Positives = 57/76 (74%)
 Frame = -2

Query: 41  FLDDEKLKKGSELKPALLRAIEGSRISLAVLSSNYASSRWCLDELVKILECRRTYGQLVI 100
           F DD  L+ G+ ++  LL AIE SR+++ VLS N+A S+WCL ELVKIL+CR+    LV+
Sbjct: 497 FKDDLSLEDGAPIEE-LLGAIEESRVAIVVLSENFADSKWCLKELVKILDCRKKKKPLVL 321

Query: 101 PLFYHVDPSHVRNQKG 116
           P+FY V+P+++R+ KG
Sbjct: 320 PIFYKVEPTNIRHLKG 273


>BP045440 
          Length = 535

 Score = 82.0 bits (201), Expect = 4e-16
 Identities = 48/105 (45%), Positives = 60/105 (56%), Gaps = 2/105 (1%)
 Frame = -3

Query: 11  QLAMQAGGEDTRHSFVSHLYAALSNAGINVFLDDEKLKKGSELKPALLRAIEGSRISLAV 70
           Q+ +   G DTR  F   LY  L   G   F DDE L+ GS ++  LL  IE SR ++ +
Sbjct: 524 QIFISFRGMDTRDDFTKPLYQGLCREGFVTFKDDESLEGGSPIEK-LLDDIEESRFAIII 348

Query: 71  LSSNYASSRWCLDELVKILECRRTYG--QLVIPLFYHVDPSHVRN 113
           LS NYA S WCL EL KILEC+   G  QLV+P    V P+ VR+
Sbjct: 347 LSKNYAESEWCLKELSKILECKDQEGKNQLVLPSSTEVTPTEVRH 213


>AV778571 
          Length = 452

 Score = 74.7 bits (182), Expect = 7e-14
 Identities = 40/111 (36%), Positives = 65/111 (58%)
 Frame = +3

Query: 632 PDFSKLPNLEKLILKDCSSLFELHHTIGDLSNLLLINLEGCTSLNNLPGKTYQLKSVKTL 691
           PD S LPNLEKL      +L ++H ++G L+ L ++++EGC  +   P    +L S++ L
Sbjct: 66  PDLSGLPNLEKLSFVYSENLIKIHESVGFLNKLRILDIEGCCKIRTFP--PMKLASLEEL 239

Query: 692 IISGCSKIDKLEEDIAQMESLTTLIAKDTAIKEVPYSILGLKSIGYISLCG 742
            +S CS ++   E +A+ME++T +    T IKE+P SI  L  +  + L G
Sbjct: 240 YLSHCSSLESFPEILAKMENITLIGVYHTPIKELPSSIGNLTRLRRLELHG 392


>TC9932 weakly similar to UP|Q93YA7 (Q93YA7) Resistance gene-like, partial
           (5%)
          Length = 689

 Score = 70.1 bits (170), Expect = 2e-12
 Identities = 32/44 (72%), Positives = 38/44 (85%)
 Frame = -2

Query: 18  GEDTRHSFVSHLYAALSNAGINVFLDDEKLKKGSELKPALLRAI 61
           G+DTRHSFVSHLY ALSNAG+NVFLDDE L++G EL+P L + I
Sbjct: 178 GKDTRHSFVSHLYTALSNAGVNVFLDDENLERGLELEPELQKLI 47


>TC18765 weakly similar to UP|Q9LVT1 (Q9LVT1) Disease resistance
           protein-like, partial (18%)
          Length = 688

 Score = 63.2 bits (152), Expect = 2e-10
 Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 9/164 (5%)
 Frame = +2

Query: 283 SGKRALVILDDVTTSEQLRALCGNREWFASGSVIIVTTRDV--RLLNSLKADYVYTMKEM 340
           S  + LV+LDDV +   L  L         G   +V +R    R+ N       Y ++ +
Sbjct: 200 SQSQILVVLDDVWSLPVLEQLVLR----VPGCKYLVVSRFKFQRIFND-----TYDVELL 352

Query: 341 DEDESLELFSWHAFGEASPREDFNE-LSRRVVAYCGGLPLALEVLGSYLNEREEIEWESV 399
            E ++L LF  HAFG  S     N+ L ++VVA CG LPLAL+V+G+ L ++ E+ W SV
Sbjct: 353 SEGDALSLFCHHAFGHKSIPFGANQNLIKQVVAECGRLPLALKVIGASLRDQNEMFWLSV 532

Query: 400 LSKLER------IPNDQVQQKLRISYDGLKDELEKDIFLDICCF 437
            ++L +           +  ++ IS + L +++ K+ FLD+C F
Sbjct: 533 KTRLSQGLSIGESYEVNLIDRMAISTNYLPEKV-KECFLDLCAF 661


>TC18755 similar to UP|AAN85378 (AAN85378) Resistance protein (Fragment),
           complete
          Length = 880

 Score = 62.8 bits (151), Expect = 3e-10
 Identities = 62/240 (25%), Positives = 112/240 (45%), Gaps = 11/240 (4%)
 Frame = +3

Query: 171 DIRLMSITDFPVGLESHLQEVIKLIESQSSKVCMVGIWGMGGLGKTTTAKAIFNQ--IHR 228
           D  L+  TD  VG++   ++++  +        ++ + GMGG+GKTT  K +++   + +
Sbjct: 168 DALLLDNTDL-VGIDRRKKKLMGCLIKPCPVRKVISVTGMGGMGKTTLVKQVYDDPVVIK 344

Query: 229 KFMCTSFIENIREVCENDSRGHMHLQEQLLSDVLKTKE---KIHSIGRGTAMIKKILSGK 285
            F   ++I  + + CE        L  QL S++ +      +     R   +IK +L  +
Sbjct: 345 HFRACAWI-TVSQSCEIGELLR-DLARQLFSEIRRPVPLGLENMRCDRLKMIIKDLLQRR 518

Query: 286 RALVILDDVTTSEQLRALCGNREWFASGSVIIVTTR--DVRLLNSLKAD-YVYTMKEMDE 342
           R LV+ DDV    +  A+         GS I++TTR  D+   +S ++   VY ++ + E
Sbjct: 519 RYLVVFDDVWHVREWEAVKYALPDNNCGSRIMITTRRSDLAFTSSTESKGKVYNLQPLKE 698

Query: 343 DESLELFSWHAFGEASPREDFNELSRRVVAYCGGLPLALEVLGSYL---NEREEIEWESV 399
           DE+ ELF    F   S       +   ++  C GLPLA+  +   L   ++R   EW+ +
Sbjct: 699 DEAWELFCRKTFHGDSCPSHLIGICTYILRKCEGLPLAIVAISGVLATKDKRRIDEWDMI 878


>BP065724 
          Length = 495

 Score = 58.5 bits (140), Expect = 5e-09
 Identities = 25/41 (60%), Positives = 33/41 (79%)
 Frame = -1

Query: 75  YASSRWCLDELVKILECRRTYGQLVIPLFYHVDPSHVRNQK 115
           YA S WCL+E+VKILEC++   QLV P+FY V+PS VR+Q+
Sbjct: 495 YADSSWCLEEVVKILECKQKNDQLVWPIFYKVEPSDVRHQR 373


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,626,069
Number of Sequences: 28460
Number of extensions: 264891
Number of successful extensions: 1490
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 1430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1465
length of query: 1069
length of database: 4,897,600
effective HSP length: 100
effective length of query: 969
effective length of database: 2,051,600
effective search space: 1988000400
effective search space used: 1988000400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)