BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0338.4
(197 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC11002 similar to GB|AAD39677.1|5103847|F9L1 Contains PF|00561 ... 239 1e-64
TC20224 similar to GB|AAP12861.1|30017255|BT006212 At2g40095 {Ar... 52 7e-08
BP073752 48 1e-06
TC14358 36 0.004
TC9399 similar to UP|GBF_DICDI (P36417) G-box binding factor (GB... 30 0.22
BP085942 29 0.63
TC10983 similar to PIR|T00713|T00713 helicase homolog F22O13.8 -... 28 1.4
BP042361 28 1.4
TC9470 similar to UP|EPA5_HUMAN (P54756) Ephrin type-A receptor ... 27 2.4
TC15994 similar to UP|Q9FL95 (Q9FL95) Genomic DNA, chromosome 5,... 27 3.1
TC15993 similar to UP|Q9FL95 (Q9FL95) Genomic DNA, chromosome 5,... 27 3.1
TC7999 similar to UP|BAD01556 (BAD01556) ERF-like protein, parti... 27 3.1
TC10508 similar to UP|AAQ88400 (AAQ88400) CaCBF1B, partial (21%) 26 4.1
TC9271 weakly similar to UP|Q9SFG3 (Q9SFG3) F2O10.5 protein (At3... 26 4.1
AV775543 26 4.1
TC18288 similar to UP|EFGM_ARATH (Q9C641) Probable elongation fa... 26 4.1
TC18206 26 5.3
TC11485 25 6.9
TC16530 similar to UP|Q9FG27 (Q9FG27) Similarity to transfactor,... 25 6.9
BP044277 25 6.9
>TC11002 similar to GB|AAD39677.1|5103847|F9L1 Contains PF|00561 alpha/beta
hydrolase fold. {Arabidopsis thaliana;} , partial (34%)
Length = 1021
Score = 239 bits (609), Expect(2) = 1e-64
Identities = 118/157 (75%), Positives = 134/157 (85%)
Frame = +3
Query: 28 LTVSSLPVVVVVVDLLVPCVLISNFTCIRCYGITKHFGRYAFKSSLTDIPLVSLMRSLII 87
L V+SLPV+V VD+LVPCV IS+FTC+RCYG +H RY FKSSLTDIPLVS++RSLII
Sbjct: 399 LLVTSLPVLVAAVDVLVPCV*ISSFTCVRCYGFKEHLRRYDFKSSLTDIPLVSVIRSLII 578
Query: 88 LCVYSICDAPTLSHGPYLGTVTLCSILSIVLLSVKTCVFTVNSRIEAEASASLKRQRLHL 147
+CVYSICD P LSHGPYLGTVT+CS +SI +LSVK CV TVNS+IEAEAS S+ R+ L L
Sbjct: 579 ICVYSICDGPALSHGPYLGTVTVCSFVSIAVLSVKACVSTVNSQIEAEASVSITRKILRL 758
Query: 148 KKSWGMPVLFLSSVVFSLGHIVVACRTSCRARRSSCF 184
KKSWGMPVLFLSSVVF+LGHIVVA RTSCRARR F
Sbjct: 759 KKSWGMPVLFLSSVVFALGHIVVAYRTSCRARRKLMF 869
Score = 23.1 bits (48), Expect(2) = 1e-64
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +1
Query: 181 SSCFIESTLKL 191
SSCFIE TLKL
Sbjct: 859 SSCFIELTLKL 891
>TC20224 similar to GB|AAP12861.1|30017255|BT006212 At2g40095 {Arabidopsis
thaliana;}, partial (34%)
Length = 576
Score = 52.0 bits (123), Expect = 7e-08
Identities = 28/64 (43%), Positives = 40/64 (61%), Gaps = 2/64 (3%)
Frame = +1
Query: 26 LDLTVSSLPVVVVVVDLLVPCVLISNFTCIRCYG--ITKHFGRYAFKSSLTDIPLVSLMR 83
L L + S PV++VV D L+P L+S + + ++ HF Y F+ SL DIPLVS++R
Sbjct: 382 LSLLIFSAPVLLVVCDALLPSALLSTLSSVSLSPETLSSHFHNYDFRYSLIDIPLVSIIR 561
Query: 84 SLII 87
S II
Sbjct: 562 SFII 573
>BP073752
Length = 403
Score = 48.1 bits (113), Expect = 1e-06
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = -2
Query: 6 FISKG*LVIIKT*SCTTRSKLDLTV 30
FISKG*LVIIKT*SCTTRSKLDLTV
Sbjct: 402 FISKG*LVIIKT*SCTTRSKLDLTV 328
>TC14358
Length = 1084
Score = 36.2 bits (82), Expect = 0.004
Identities = 22/38 (57%), Positives = 26/38 (67%)
Frame = -2
Query: 1 RVPQLFISKG*LVIIKT*SCTTRSKLDLTVSSLPVVVV 38
RV LFI K LVIIKT*SCTT LDLT + + V+ +
Sbjct: 156 RVS*LFIHK*ILVIIKT*SCTT*PNLDLTDAPIEVMTL 43
>TC9399 similar to UP|GBF_DICDI (P36417) G-box binding factor (GBF),
partial (3%)
Length = 718
Score = 30.4 bits (67), Expect = 0.22
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = -2
Query: 13 VIIKT*SCTTRSKLDLTVSSLP 34
VIIKT*SCTT S LD+T+ + P
Sbjct: 708 VIIKT*SCTT*SNLDITLYTPP 643
>BP085942
Length = 208
Score = 28.9 bits (63), Expect = 0.63
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +2
Query: 14 IIKT*SCTTRSKLDLT 29
IIKT*S TTRSKLDLT
Sbjct: 2 IIKT*SGTTRSKLDLT 49
>TC10983 similar to PIR|T00713|T00713 helicase homolog F22O13.8 -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(3%)
Length = 572
Score = 27.7 bits (60), Expect = 1.4
Identities = 17/54 (31%), Positives = 26/54 (47%)
Frame = -2
Query: 92 SICDAPTLSHGPYLGTVTLCSILSIVLLSVKTCVFTVNSRIEAEASASLKRQRL 145
S + PTLSHG + L + L SV C V+ R+E ++ +R R+
Sbjct: 247 SSSNLPTLSHGAHSPQTVLLPNFTP*LRSVNKCARLVHFRVEKRLASLGERMRV 86
>BP042361
Length = 394
Score = 27.7 bits (60), Expect = 1.4
Identities = 27/98 (27%), Positives = 44/98 (44%)
Frame = -2
Query: 30 VSSLPVVVVVVDLLVPCVLISNFTCIRCYGITKHFGRYAFKSSLTDIPLVSLMRSLIILC 89
+ ++ VVVVVV LL+P + C+ Y +G Y K L I L+SL ++++
Sbjct: 339 IVAVVVVVVVVFLLLPLSTLLVIYCLVFYLSDFFYGLYR-K*GLQSITLLSL*LEILLVV 163
Query: 90 VYSICDAPTLSHGPYLGTVTLCSILSIVLLSVKTCVFT 127
V HG +C+ S+++ C FT
Sbjct: 162 VI---------HG---SGFKMCATSSMIIEHYCKCYFT 85
>TC9470 similar to UP|EPA5_HUMAN (P54756) Ephrin type-A receptor 5
precursor (Tyrosine-protein kinase receptor EHK-1) (Eph
homology kinase-1) (Receptor protein-tyrosine kinase
HEK7) , partial (3%)
Length = 1204
Score = 26.9 bits (58), Expect = 2.4
Identities = 21/82 (25%), Positives = 36/82 (43%)
Frame = -2
Query: 19 SCTTRSKLDLTVSSLPVVVVVVDLLVPCVLISNFTCIRCYGITKHFGRYAFKSSLTDIPL 78
S + ++L L SS + V L P + + +FT R T H GR + + + L
Sbjct: 348 STFSETRLLLPFSSSGAIQGRVPLTPPDIRVWHFTLDRPKSPTLHIGRCGSRRFTSKLSL 169
Query: 79 VSLMRSLIILCVYSICDAPTLS 100
++ C YSI A +++
Sbjct: 168 FKSKCTMFFPCRYSIPKATSIA 103
>TC15994 similar to UP|Q9FL95 (Q9FL95) Genomic DNA, chromosome 5, TAC
clone:K21C13 (AT5g45020/K21C13_21), partial (53%)
Length = 660
Score = 26.6 bits (57), Expect = 3.1
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 30 VSSLPVVVVVVDLLVPCVLISNFT--CIRCYGITKHFGRY 67
+SSL ++ + + L VPC+L+ T +C+ H G+Y
Sbjct: 223 ISSLYIICLSLGLQVPCLLVYQRT*QSHQCHVSQAHLGKY 342
>TC15993 similar to UP|Q9FL95 (Q9FL95) Genomic DNA, chromosome 5, TAC
clone:K21C13 (AT5g45020/K21C13_21), partial (41%)
Length = 545
Score = 26.6 bits (57), Expect = 3.1
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +3
Query: 30 VSSLPVVVVVVDLLVPCVLISNFT--CIRCYGITKHFGRY 67
+SSL ++ + + L VPC+L+ T +C+ H G+Y
Sbjct: 234 ISSLYIICLSLGLQVPCLLVYQRT*QSHQCHVSQAHLGKY 353
>TC7999 similar to UP|BAD01556 (BAD01556) ERF-like protein, partial (11%)
Length = 690
Score = 26.6 bits (57), Expect = 3.1
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -3
Query: 91 YSICDAPTLSHGPYLGTVTLCSILSIVL 118
+S+ +AP + + +L T+ LC LSI++
Sbjct: 397 FSLIEAPKIPYLTFLNTIILCHRLSIIV 314
>TC10508 similar to UP|AAQ88400 (AAQ88400) CaCBF1B, partial (21%)
Length = 554
Score = 26.2 bits (56), Expect = 4.1
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = -3
Query: 36 VVVVVDLLVPCVLISNFTCIRCYGITKHFGRYAFKSSLTDIPLVSLMRSLIILCVYS 92
++ V ++V LIS IR T +G Y+ S+L ++ + +++ I L YS
Sbjct: 549 IMCVYIIVVLIFLISTLISIRTIEKTHKYGHYSLISTLINLFIPQIIKKKIKLINYS 379
>TC9271 weakly similar to UP|Q9SFG3 (Q9SFG3) F2O10.5 protein (At3g05990),
partial (32%)
Length = 1035
Score = 26.2 bits (56), Expect = 4.1
Identities = 14/41 (34%), Positives = 23/41 (55%), Gaps = 1/41 (2%)
Frame = +3
Query: 98 TLSHGPYLG-TVTLCSILSIVLLSVKTCVFTVNSRIEAEAS 137
TL PYLG ++LC + I+ + + +F +NS E + S
Sbjct: 531 TLRDFPYLG*RLSLCQEIFILFVLILVEIFIINSSTEDQTS 653
>AV775543
Length = 355
Score = 26.2 bits (56), Expect = 4.1
Identities = 16/62 (25%), Positives = 29/62 (45%)
Frame = -2
Query: 87 ILCVYSICDAPTLSHGPYLGTVTLCSILSIVLLSVKTCVFTVNSRIEAEASASLKRQRLH 146
+LC++ I PT +H P L T I ++ C FT+ ++ + S + R H
Sbjct: 222 LLCLWGITITPTFTHSP-LHRQTSLVITKWNIVKCANCFFTITLILKIDKS----KTRFH 58
Query: 147 LK 148
++
Sbjct: 57 VQ 52
>TC18288 similar to UP|EFGM_ARATH (Q9C641) Probable elongation factor G,
mitochondrial precursor (mEF-G), partial (8%)
Length = 421
Score = 26.2 bits (56), Expect = 4.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 144 RLHLKKSWGMPVLFLSSVVFSLGHIVVACR 173
RL++ ++WGM ++F SL H CR
Sbjct: 132 RLYIMRNWGMFLVFHCEFTLSLCHGTQRCR 43
>TC18206
Length = 709
Score = 25.8 bits (55), Expect = 5.3
Identities = 17/48 (35%), Positives = 27/48 (55%), Gaps = 2/48 (4%)
Frame = -1
Query: 135 EASASLKRQR--LHLKKSWGMPVLFLSSVVFSLGHIVVACRTSCRARR 180
++S L++++ LH+K+S VL SS ++ L V A R CR R
Sbjct: 427 KSSKQLEKRKITLHVKRSTKSTVLIDSSKIYKLPGTVRAKRRRCREVR 284
>TC11485
Length = 572
Score = 25.4 bits (54), Expect = 6.9
Identities = 12/29 (41%), Positives = 18/29 (61%)
Frame = +2
Query: 86 IILCVYSICDAPTLSHGPYLGTVTLCSIL 114
++ CVY + LSHG YL ++ +CS L
Sbjct: 455 LVRCVYLLSRHEILSHGTYLYSI-ICSSL 538
>TC16530 similar to UP|Q9FG27 (Q9FG27) Similarity to transfactor, partial
(10%)
Length = 516
Score = 25.4 bits (54), Expect = 6.9
Identities = 12/28 (42%), Positives = 17/28 (59%), Gaps = 2/28 (7%)
Frame = -3
Query: 41 DLLVP--CVLISNFTCIRCYGITKHFGR 66
DLLV C+ SN+ C RCY ++ G+
Sbjct: 184 DLLVYHYCLYCSNYECSRCYYLSSAVGQ 101
>BP044277
Length = 407
Score = 25.4 bits (54), Expect = 6.9
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Frame = +2
Query: 42 LLVPCVLISNFTCIRCYGITKHFGRYAF------KSSLTDIPLVSLMRSLIILCVY 91
++VP + +S F C ++HF Y++ + L ++ LVS + C Y
Sbjct: 122 IIVPHITLSIFLMFYCLHYSQHFLHYSYSR*HSLQLCLVNLKLVSSAHRPLFRCFY 289
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.343 0.149 0.469
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,967,356
Number of Sequences: 28460
Number of extensions: 63083
Number of successful extensions: 789
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of query: 197
length of database: 4,897,600
effective HSP length: 85
effective length of query: 112
effective length of database: 2,478,500
effective search space: 277592000
effective search space used: 277592000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 53 (25.0 bits)
Lotus: description of TM0338.4