TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0338.2
         (282 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18927 similar to PIR|AI2934|AI2934 chromate transport protein ...    37  0.004
TC12308 similar to UP|Q9ZU41 (Q9ZU41) Predicted by genscan and g...    27  5.1

>TC18927 similar to PIR|AI2934|AI2934 chromate transport protein chrA
           [imported] - Agrobacterium                tumefaciens
           (strain C58, Dupont) {Agrobacterium tumefaciens;},
           partial (6%)
          Length = 561

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
 Frame = -2

Query: 222 KATEVELMKNRRMDRA-----GTGGPMRSSPRSYQGKGKLQMKKPYQRPTGEGFTPG 273
           KA  +E + N R   A     G+GGP RS+P  +  + K   KKP+QRP   G + G
Sbjct: 560 KAKSIEAIDNLRSRPAFRPNQGSGGPNRSAPGRFD-RNKSFQKKPFQRPQNRGTSSG 393


>TC12308 similar to UP|Q9ZU41 (Q9ZU41) Predicted by genscan and genefinder
           (At2g01260), partial (57%)
          Length = 895

 Score = 26.6 bits (57), Expect = 5.1
 Identities = 12/39 (30%), Positives = 20/39 (50%)
 Frame = +3

Query: 167 PEYAAKLESLAKHFRFFRDQVDEPYMCKRFVRGLRADIE 205
           P    +L +L +  +     V   Y+ KR  RG+R+D+E
Sbjct: 27  PPPVKRLSNLEQFLQAITPSVPAQYLPKRTTRGIRSDVE 143


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.319    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,615,523
Number of Sequences: 28460
Number of extensions: 39141
Number of successful extensions: 167
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of query: 282
length of database: 4,897,600
effective HSP length: 89
effective length of query: 193
effective length of database: 2,364,660
effective search space: 456379380
effective search space used: 456379380
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)