BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0336.3
(230 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC18158 similar to UP|Q84TD6 (Q84TD6) At3g04070, partial (34%) 61 1e-10
BP050825 59 7e-10
TC16783 similar to UP|AAR88435 (AAR88435) NAC domain protein, pa... 58 1e-09
BP038107 58 2e-09
TC16724 similar to GB|BAB20599.1|12060424|AB049070 AtNAC3 {Arabi... 55 1e-08
TC16322 homologue to UP|Q9SQL0 (Q9SQL0) Jasmonic acid 2, partial... 50 3e-07
TC20162 similar to UP|Q8LKN6 (Q8LKN6) Nam-like protein 18, parti... 45 1e-05
TC19684 similar to UP|AAR88435 (AAR88435) NAC domain protein, pa... 36 0.005
TC10464 weakly similar to UP|Q8L8G0 (Q8L8G0) Nam-like protein 1,... 36 0.006
CB826743 34 0.024
TC14586 similar to UP|Q9FY93 (Q9FY93) NAM-like protein (AT5g1318... 33 0.054
AV764930 32 0.092
CB829660 28 1.3
AU251563 26 5.1
TC17473 similar to UP|O82264 (O82264) At2g47970 protein (Express... 26 5.1
BP052825 26 5.1
AW720487 25 8.6
TC14544 25 8.6
>TC18158 similar to UP|Q84TD6 (Q84TD6) At3g04070, partial (34%)
Length = 476
Score = 61.2 bits (147), Expect = 1e-10
Identities = 47/149 (31%), Positives = 67/149 (44%), Gaps = 7/149 (4%)
Frame = +3
Query: 56 LPAGVKFDPNDQEILEHLEAKVVSDVCKLHPLIDQFIPTLQGDNGICYTHPEKLPGVSKD 115
LP G +F P D+E++ H K V+ + PL I + I P +LPG +
Sbjct: 78 LPPGFRFHPTDEELILHYLRKKVASI----PLPVSIIAEVD----IYKLDPWELPGKALF 233
Query: 116 GQVRHFFHRP-SKAYTTGTRKRRKVHTDDEGSETRWHKTGKTRAVFA---GGGAVK---G 168
G+ +F P + Y G R R + W TG + + A GGG + G
Sbjct: 234 GEKEWYFFSPRDRKYPNGARPNRAA------ASGYWKATGTDKTIVASLPGGGRAQDSIG 395
Query: 169 FKKIMVLYTNFGRQRKPEKTNWVMHQYHL 197
KK +V Y G+ K KTNW+MH+Y L
Sbjct: 396 VKKALVFYK--GKPPKGVKTNWIMHEYRL 476
>BP050825
Length = 539
Score = 58.9 bits (141), Expect = 7e-10
Identities = 44/148 (29%), Positives = 64/148 (42%), Gaps = 2/148 (1%)
Frame = +2
Query: 56 LPAGVKFDPNDQEILEHLEAKVVSDVCKLHPLIDQFIPTLQGDNGICYTHPEKLPGVSKD 115
LP G +F P D+E++ H K + V PL I + + P +LP +
Sbjct: 38 LPPGFRFHPTDEELVVHYLKKKAASV----PLPVAIIAEVD----LYKFDPWELPAKATF 193
Query: 116 GQVRHFFHRP-SKAYTTGTRKRRKVHTDDEGSETRWHKTGKTRAVFAGGGAVK-GFKKIM 173
G+ +F P + Y G R R + W TG + V G K G KK +
Sbjct: 194 GEQEWYFFSPRDRKYPNGARPNRAA------TSGYWKATGTDKPVLTSNGTQKVGVKKAL 355
Query: 174 VLYTNFGRQRKPEKTNWVMHQYHLGSNE 201
V Y G+ + KTNW+MH+Y L N+
Sbjct: 356 VFYG--GKPPRGIKTNWIMHEYRLADNK 433
>TC16783 similar to UP|AAR88435 (AAR88435) NAC domain protein, partial (46%)
Length = 511
Score = 58.2 bits (139), Expect = 1e-09
Identities = 47/154 (30%), Positives = 70/154 (44%), Gaps = 2/154 (1%)
Frame = +1
Query: 48 RDQGGIHGLPAGVKFDPNDQEILEH-LEAKVVSDVCKLHPLIDQFIPTLQGDNGICYTHP 106
R QG + LP G +F P D E+++H L AK S + P+I + + P
Sbjct: 76 RMQGALE-LPPGFRFHPTDDELVKHYLCAKCASQPINV-PIIKEL--------DLYKFDP 225
Query: 107 EKLPGVSKDGQVRHFFHRP-SKAYTTGTRKRRKVHTDDEGSETRWHKTGKTRAVFAGGGA 165
+LP ++ G+ +F P + Y G+R R T W TG + + G
Sbjct: 226 WQLPDMALYGEKEWYFFTPRDRKYPNGSRPNRAAGTG------YWKATGADKPI--GKPK 381
Query: 166 VKGFKKIMVLYTNFGRQRKPEKTNWVMHQYHLGS 199
G KK +V Y G+ K KTNW+MH+Y L +
Sbjct: 382 TLGIKKALVFYA--GKAPKGVKTNWIMHEYRLAN 477
>BP038107
Length = 469
Score = 57.8 bits (138), Expect = 2e-09
Identities = 41/142 (28%), Positives = 62/142 (42%), Gaps = 1/142 (0%)
Frame = +3
Query: 57 PAGVKFDPNDQEILEHLEAKVVSDVCKLHPLIDQFIPTLQGDNGICYTHPEKLPGVSKDG 116
P G +F P D+E++ H + C P+ I + + P LPG++ G
Sbjct: 66 PPGFRFHPTDEELVLHYLCRK----CASQPIAVPIIAEID----LYKYDPWDLPGLASYG 221
Query: 117 QVRHFFHRP-SKAYTTGTRKRRKVHTDDEGSETRWHKTGKTRAVFAGGGAVKGFKKIMVL 175
+ +F P + Y G+R R T W TG + + G G KK +V
Sbjct: 222 EKEWYFFSPRDRKYPNGSRPNRAAGTG------YWKATGADKPI--GHPKPVGIKKALVF 377
Query: 176 YTNFGRQRKPEKTNWVMHQYHL 197
Y G+ K +KTNW+MH+Y L
Sbjct: 378 YA--GKAPKGDKTNWIMHEYRL 437
>TC16724 similar to GB|BAB20599.1|12060424|AB049070 AtNAC3 {Arabidopsis
thaliana;}, partial (53%)
Length = 615
Score = 54.7 bits (130), Expect = 1e-08
Identities = 42/143 (29%), Positives = 62/143 (42%), Gaps = 1/143 (0%)
Frame = +2
Query: 56 LPAGVKFDPNDQEILEHLEAKVVSDVCKLHPLIDQFIPTLQGDNGICYTHPEKLPGVSKD 115
LP G +F P D+E+L + V+ P+I + + P LPG +
Sbjct: 134 LPPGFRFFPTDEELLVQYLCRKVAGYHFSLPIIAEI--------DLYKFDPWVLPGKAIF 289
Query: 116 GQVRHFFHRP-SKAYTTGTRKRRKVHTDDEGSETRWHKTGKTRAVFAGGGAVKGFKKIMV 174
G+ +F P + Y G+R R + W TG + + G V G KK +V
Sbjct: 290 GEKEWYFFSPRDRKYPNGSRPNRVAGSG------YWKATGTDKVITTEGRKV-GIKKALV 448
Query: 175 LYTNFGRQRKPEKTNWVMHQYHL 197
Y G+ K KTNW+MH+Y L
Sbjct: 449 FY--IGKAPKGTKTNWIMHEYRL 511
>TC16322 homologue to UP|Q9SQL0 (Q9SQL0) Jasmonic acid 2, partial (40%)
Length = 510
Score = 50.1 bits (118), Expect = 3e-07
Identities = 40/141 (28%), Positives = 60/141 (42%), Gaps = 1/141 (0%)
Frame = +1
Query: 56 LPAGVKFDPNDQEILEHLEAKVVSDVCKLHPLIDQFIPTLQGDNGICYTHPEKLPGVSKD 115
LP G +F P D+E+L + V+ P+I + + P LP +
Sbjct: 136 LPPGFRFYPTDEELLVQYLCRKVAGHNFTLPIIAEI--------DLYKFDPWVLPSKAIF 291
Query: 116 GQVRHFFHRP-SKAYTTGTRKRRKVHTDDEGSETRWHKTGKTRAVFAGGGAVKGFKKIMV 174
G+ +F P + Y G+R R + W TG + + G V G KK +V
Sbjct: 292 GEKEWYFFSPRDRKYPNGSRPNRVAGSG------YWKATGTDKIITTEGRKV-GIKKALV 450
Query: 175 LYTNFGRQRKPEKTNWVMHQY 195
Y G+ K KTNW+MH+Y
Sbjct: 451 FYV--GKAPKGTKTNWIMHEY 507
>TC20162 similar to UP|Q8LKN6 (Q8LKN6) Nam-like protein 18, partial (17%)
Length = 623
Score = 44.7 bits (104), Expect = 1e-05
Identities = 21/43 (48%), Positives = 27/43 (61%)
Frame = +2
Query: 155 KTRAVFAGGGAVKGFKKIMVLYTNFGRQRKPEKTNWVMHQYHL 197
+ R +F G G + G KK +V Y GR K EKTNWVMH++ L
Sbjct: 17 RVREIFKGKGNLVGMKKTLVFYR--GRAPKGEKTNWVMHEFRL 139
>TC19684 similar to UP|AAR88435 (AAR88435) NAC domain protein, partial (48%)
Length = 535
Score = 36.2 bits (82), Expect = 0.005
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +3
Query: 162 GGGAVKGFKKIMVLYTNFGRQRKPEKTNWVMHQYHLGS 199
G G KK +VLY G+ K KTNW+MH+Y L +
Sbjct: 384 GSPRALGIKKALVLYV--GKAPKGIKTNWIMHEYRLAN 491
>TC10464 weakly similar to UP|Q8L8G0 (Q8L8G0) Nam-like protein 1, partial
(12%)
Length = 935
Score = 35.8 bits (81), Expect = 0.006
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +1
Query: 163 GGAVKGFKKIMVLYTNFGRQRKPEKTNWVMHQY 195
G ++ G KK +V Y GR K ++TNWVMH+Y
Sbjct: 4 GSSLIGMKKTLVFY--HGRAPKGKRTNWVMHEY 96
>CB826743
Length = 513
Score = 33.9 bits (76), Expect = 0.024
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 163 GGAVKGFKKIMVLYTNFGRQRKPEKTNWVMHQY 195
G + G KK +V Y GR K ++T+WVMH+Y
Sbjct: 20 GSTLIGMKKTLVFYA--GRAPKGKRTHWVMHEY 112
>TC14586 similar to UP|Q9FY93 (Q9FY93) NAM-like protein
(AT5g13180/T19L5_140), partial (18%)
Length = 589
Score = 32.7 bits (73), Expect = 0.054
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 168 GFKKIMVLYTNFGRQRKPEKTNWVMHQYHLGSN 200
G KK +V YT G+ +T+W+MH+Y L +N
Sbjct: 6 GMKKTLVFYT--GKPPHGSRTDWIMHEYRLLTN 98
>AV764930
Length = 334
Score = 32.0 bits (71), Expect = 0.092
Identities = 15/49 (30%), Positives = 25/49 (50%), Gaps = 2/49 (4%)
Frame = +3
Query: 150 WHKTGKTRAVFAGGGAVKGFKKIMVLY--TNFGRQRKPEKTNWVMHQYH 196
W + K + GGG +K ++ + + +N KPE NW+MH +H
Sbjct: 150 WVQKPKNWLILQGGGFLKNYQYLSLGAGGSNADSSPKPETLNWLMHLHH 296
>CB829660
Length = 517
Score = 28.1 bits (61), Expect = 1.3
Identities = 19/56 (33%), Positives = 25/56 (43%)
Frame = +1
Query: 56 LPAGVKFDPNDQEILEHLEAKVVSDVCKLHPLIDQFIPTLQGDNGICYTHPEKLPG 111
LP G +F P D+E++ H VS HP IP + I P +LPG
Sbjct: 130 LPPGFRFHPTDEELIVHYLCNQVSS----HPSPAPIIPEVD----IYKFDPWELPG 273
>AU251563
Length = 350
Score = 26.2 bits (56), Expect = 5.1
Identities = 11/27 (40%), Positives = 15/27 (54%)
Frame = +3
Query: 18 TPTNTPKAIINLTEGIHTIKCPSCSHN 44
TPT TPK + T + T P C+H+
Sbjct: 225 TPTKTPKTPSSTTRRMTTTTNPPCAHS 305
>TC17473 similar to UP|O82264 (O82264) At2g47970 protein (Expressed
protein), partial (33%)
Length = 549
Score = 26.2 bits (56), Expect = 5.1
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Frame = -1
Query: 93 PTLQGDNGICYTHPEKLPGVSKDGQVRH-----FFHRPSKAYT---TGTRKRRKVHTDDE 144
P L GD + P K G ++DG RH A T +G R+ R H +
Sbjct: 477 PHLLGDEIVHGHLPAKRAGRAEDGGARHPPLAVVGEEHDGAVTEVESGERRVRVCHVGE- 301
Query: 145 GSETRWHKTGKTRAVFAGGGAVKGFKKIMVL 175
SE + + G+ + + G G V G+ +VL
Sbjct: 300 -SEEIFRRLGE*KVLVGGEGLVVGWDS*LVL 211
>BP052825
Length = 475
Score = 26.2 bits (56), Expect = 5.1
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +1
Query: 120 HFFHRPSKAYTTGTRKRRKVHTDDEGSETRWHKTGKTRAVFAGGGAVK 167
H FH P+K ++ HTD+ T+ H G GG A K
Sbjct: 175 HSFHPPNKIQQRLQKREEVKHTDELAV*TKNHMLGSAVGNHYGGEARK 318
>AW720487
Length = 575
Score = 25.4 bits (54), Expect = 8.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 52 GIHGLPAGVKFDPNDQEILEHLE 74
G +G P V PNDQ +L HL+
Sbjct: 229 GWNGHPGEVHLRPNDQVLLAHLQ 297
>TC14544
Length = 1160
Score = 25.4 bits (54), Expect = 8.6
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = -1
Query: 105 HPEKLPGVSKDGQVRHFFHRPSKAYTTGTRKRRKVHTDDEGSETRWHK 152
HP P + GQ RH P++ TR+RR + WHK
Sbjct: 422 HPPHTPSPATQGQARH-SRSPTRRSAGRTRRRR---------DQPWHK 309
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.317 0.136 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,223,621
Number of Sequences: 28460
Number of extensions: 56662
Number of successful extensions: 315
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of query: 230
length of database: 4,897,600
effective HSP length: 87
effective length of query: 143
effective length of database: 2,421,580
effective search space: 346285940
effective search space used: 346285940
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0336.3