TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0336.16
         (135 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC12458 similar to UP|Q9LDI2 (Q9LDI2) ESTs C91695, partial (41%)       30  0.19
TC10608 weakly similar to UP|CAD41394 (CAD41394) OJ000223_09.7 p...    29  0.24
TC19497 weakly similar to UP|Q8LA02 (Q8LA02) Contains similarity...    29  0.32
AV408163                                                               28  0.70
BP080550                                                               28  0.70
TC16179 weakly similar to UP|Q7PXR0 (Q7PXR0) AgCP12009, partial ...    27  0.92
TC8572 similar to UP|Q9SCM3 (Q9SCM3) 40S ribosomal protein S2 ho...    27  1.2
TC8182 weakly similar to UP|Q93VA8 (Q93VA8) At1g76010/T4O12_22, ...    27  1.2
TC8299 similar to UP|Q9XEX8 (Q9XEX8) Remorin 1, partial (67%)          27  1.6
TC14095 homologue to UP|RS2_ARATH (P49688) 40S ribosomal protein...    26  2.0
TC17224                                                                26  2.0
TC14626 weakly similar to GB|AAO39889.1|28372814|BT003661 At5g09...    26  2.0
AW720113                                                               26  2.7
TC10403 similar to UP|O80815 (O80815) T8F5.22 protein, partial (...    26  2.7
TC7981 similar to UP|Q42487 (Q42487) Extensin like protein, comp...    26  2.7
TC15164 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, p...    26  2.7
TC18826 similar to UP|Q9LUW5 (Q9LUW5) DEAD-box RNA helicase-like...    26  2.7
TC19378 weakly similar to UP|O80967 (O80967) At2g39140 protein, ...    26  2.7
BP059070                                                               25  3.5
BP041995                                                               25  3.5

>TC12458 similar to UP|Q9LDI2 (Q9LDI2) ESTs C91695, partial (41%)
          Length = 842

 Score = 29.6 bits (65), Expect = 0.19
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 29 FCKKGCNSDGETWEECLEEC 48
          FC +GC SD ETWE   + C
Sbjct: 24 FC*QGCRSDVETWEHRRQTC 83


>TC10608 weakly similar to UP|CAD41394 (CAD41394) OJ000223_09.7 protein,
           partial (35%)
          Length = 820

 Score = 29.3 bits (64), Expect = 0.24
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 89  GYKFEVQQEKAEKICPNRPLKPAPVQKPKPQPVEQLDP 126
           G + E+ Q + E + P +P  P PVQ+PKP   + + P
Sbjct: 398 GQQSELVQSEPEPVEPTKP--PTPVQEPKPAQKKLVKP 505


>TC19497 weakly similar to UP|Q8LA02 (Q8LA02) Contains similarity to
           RNA-binding protein from Arabidopsis thaliana gi|2129727
           and contains RNA recognition PF|00076 domain, partial
           (11%)
          Length = 436

 Score = 28.9 bits (63), Expect = 0.32
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = -2

Query: 74  ASYSEECFHACVSGCGYKFEVQQEKAEKICPNRPLKPAPVQKPKPQPVEQLDPPEDMHGI 133
           A++S        S   ++  V  ++ +   P+ PL P P  +P P+P  +  PP  +  +
Sbjct: 279 ANFSPSASSPRYSPPAWEISVS*DRPDLSSPSLPLNPLPRPRPLPRPRPRPSPPPSLGVL 100

Query: 134 S 134
           S
Sbjct: 99  S 97


>AV408163 
          Length = 425

 Score = 27.7 bits (60), Expect = 0.70
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 109 KPAPVQKPKPQPVEQLDPP 127
           +P PV++  P PV+QL PP
Sbjct: 208 RPPPVRQELPSPVDQLPPP 264


>BP080550 
          Length = 379

 Score = 27.7 bits (60), Expect = 0.70
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 104 PNRPLKPAPVQKPKPQPVEQLDPPEDMH 131
           PN  ++  P  K  P P+  LDPP+  H
Sbjct: 232 PNNYMQSPPATKQPPPPL*SLDPPQTGH 149


>TC16179 weakly similar to UP|Q7PXR0 (Q7PXR0) AgCP12009, partial (20%)
          Length = 814

 Score = 27.3 bits (59), Expect = 0.92
 Identities = 12/29 (41%), Positives = 16/29 (54%)
 Frame = +3

Query: 104 PNRPLKPAPVQKPKPQPVEQLDPPEDMHG 132
           P+ P  P PV  P+  P + L PP  +HG
Sbjct: 129 PSSP-DPFPVHSPQKPPTKILPPPPQIHG 212


>TC8572 similar to UP|Q9SCM3 (Q9SCM3) 40S ribosomal protein S2 homolog
           (At3g57490), partial (91%)
          Length = 1076

 Score = 26.9 bits (58), Expect = 1.2
 Identities = 11/24 (45%), Positives = 13/24 (53%)
 Frame = -3

Query: 104 PNRPLKPAPVQKPKPQPVEQLDPP 127
           P RPL P   + PKP+P     PP
Sbjct: 165 PPRPLSPPRPRPPKPRPKPPRSPP 94


>TC8182 weakly similar to UP|Q93VA8 (Q93VA8) At1g76010/T4O12_22, partial
           (13%)
          Length = 611

 Score = 26.9 bits (58), Expect = 1.2
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 106 RPLKPAPVQKPKPQPV 121
           RP KP P+ +PKP+P+
Sbjct: 130 RPRKPRPLPRPKPRPL 83


>TC8299 similar to UP|Q9XEX8 (Q9XEX8) Remorin 1, partial (67%)
          Length = 1098

 Score = 26.6 bits (57), Expect = 1.6
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 9/47 (19%)
 Frame = +2

Query: 93  EVQQEKAEKICPNRPLKPAPVQ---------KPKPQPVEQLDPPEDM 130
           E Q +K E   P+ P  PAP           + KP+PV    P ED+
Sbjct: 152 EEQPKKVESESPSNPPPPAPAPTESTPAPEAEAKPEPVVHDAPKEDV 292


>TC14095 homologue to UP|RS2_ARATH (P49688) 40S ribosomal protein S2,
           partial (88%)
          Length = 1134

 Score = 26.2 bits (56), Expect = 2.0
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -3

Query: 104 PNRPLKPAPV--QKPKPQPVEQLDPP 127
           P RPL P P+  + PKP+P     PP
Sbjct: 145 PPRPLSPRPLSPRPPKPRPNPPRSPP 68


>TC17224 
          Length = 506

 Score = 26.2 bits (56), Expect = 2.0
 Identities = 11/23 (47%), Positives = 12/23 (51%)
 Frame = -1

Query: 30  CKKGCNSDGETWEECLEECDHIC 52
           C  G  S G   EE LE+C  IC
Sbjct: 335 CSAGSGSPGNRSEEILEDC*RIC 267


>TC14626 weakly similar to GB|AAO39889.1|28372814|BT003661 At5g09570
           {Arabidopsis thaliana;}, partial (60%)
          Length = 745

 Score = 26.2 bits (56), Expect = 2.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 106 RPLKPAPVQKPKPQPVEQLDPP 127
           R  +PAP   P+P PV    PP
Sbjct: 81  RSARPAPRAAPRPAPVNHAPPP 146


>AW720113 
          Length = 512

 Score = 25.8 bits (55), Expect = 2.7
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 107 PLKPAPVQKPKPQPVEQLDPP 127
           PL P P   P PQP  Q  PP
Sbjct: 103 PLDPPPPPLPPPQPQPQPPPP 165


>TC10403 similar to UP|O80815 (O80815) T8F5.22 protein, partial (15%)
          Length = 1392

 Score = 25.8 bits (55), Expect = 2.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 103  CPNRPLKPAPVQKPKPQPVEQLDPPE 128
            CP  PL  +PV  P PQP+    PP+
Sbjct: 1084 CPQPPL--SPVLAPPPQPLPPSLPPQ 1013


>TC7981 similar to UP|Q42487 (Q42487) Extensin like protein, complete
          Length = 804

 Score = 25.8 bits (55), Expect = 2.7
 Identities = 10/17 (58%), Positives = 11/17 (63%)
 Frame = +2

Query: 104 PNRPLKPAPVQKPKPQP 120
           PN   KP+P  KPKP P
Sbjct: 179 PNPKPKPSPSPKPKPNP 229



 Score = 24.3 bits (51), Expect = 7.8
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 103 CPNRPLKPAPVQKPKPQP 120
           CP    KP P   PKP+P
Sbjct: 170 CPGPNPKPKPSPSPKPKP 223


>TC15164 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, partial
           (57%)
          Length = 1185

 Score = 25.8 bits (55), Expect = 2.7
 Identities = 9/28 (32%), Positives = 14/28 (49%)
 Frame = +3

Query: 104 PNRPLKPAPVQKPKPQPVEQLDPPEDMH 131
           P  PL+  P   P+ +P   + PP+  H
Sbjct: 303 PRHPLRQPPRPPPRTRPHRAVPPPQPQH 386


>TC18826 similar to UP|Q9LUW5 (Q9LUW5) DEAD-box RNA helicase-like protein,
           partial (29%)
          Length = 782

 Score = 25.8 bits (55), Expect = 2.7
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +1

Query: 96  QEKAEKICPNRPLKPAPVQKPKPQPVEQLDPP 127
           Q   E + P+R   P P   P+P P   +  P
Sbjct: 19  QSSEELVPPSRGAAPPPSSPPQPSPASSVSSP 114


>TC19378 weakly similar to UP|O80967 (O80967) At2g39140 protein, partial
           (17%)
          Length = 466

 Score = 25.8 bits (55), Expect = 2.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 104 PNRPLKPAPVQKPKPQPVEQLDPPED 129
           P++P KP P  KPKP+P    D   D
Sbjct: 180 PSKP-KPKPKPKPKPKPEPDNDDTAD 254


>BP059070 
          Length = 437

 Score = 25.4 bits (54), Expect = 3.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 81  FHACVSGCGYKFEVQQEKAEKICPNRPLKPAPV 113
           +H C  GC   FE+ +E+ E       +K  PV
Sbjct: 198 YHVCFEGCLTNFEIGEEEVEACELYPEIKYTPV 100


>BP041995 
          Length = 475

 Score = 25.4 bits (54), Expect = 3.5
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 109 KPAPVQKPKPQPVEQL 124
           KPAP Q P P P+E L
Sbjct: 155 KPAPSQPPTPPPLEDL 202


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.317    0.134    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,812,871
Number of Sequences: 28460
Number of extensions: 73696
Number of successful extensions: 590
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of query: 135
length of database: 4,897,600
effective HSP length: 81
effective length of query: 54
effective length of database: 2,592,340
effective search space: 139986360
effective search space used: 139986360
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)