BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0336.15
(501 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC13983 homologue to UP|AAR29343 (AAR29343) Allantoinase , part... 176 6e-45
BP055471 102 2e-23
TC16222 similar to UP|Q9FMP3 (Q9FMP3) Dihydropyrimidinase (Dihyd... 40 9e-04
BG662368 40 9e-04
TC16221 similar to UP|Q9FMP3 (Q9FMP3) Dihydropyrimidinase (Dihyd... 39 0.003
AV408497 30 1.2
AV765361 28 2.7
TC16562 similar to GB|AAM78073.1|21928089|AY125563 AT4g24660/F22... 28 2.7
AV764870 28 3.5
TC9575 similar to UP|Q9XIS3 (Q9XIS3) Lectin-like protein kinase,... 27 7.8
>TC13983 homologue to UP|AAR29343 (AAR29343) Allantoinase , partial (18%)
Length = 432
Score = 176 bits (447), Expect = 6e-45
Identities = 84/88 (95%), Positives = 87/88 (98%)
Frame = +3
Query: 414 SQKPATLAGIASKGAIVVGNHADIVVWHPELEFELNDDYPVFLKHPNLSAYMGRRLSGKV 473
++ PATLAGIASKGAIVVGNHADIVVWHPELEFELNDDYPVFLKHPNLSAYMGRRLSGKV
Sbjct: 24 ARNPATLAGIASKGAIVVGNHADIVVWHPELEFELNDDYPVFLKHPNLSAYMGRRLSGKV 203
Query: 474 LDTFVRGNLVFKDGKHAPAACGVPILAK 501
LDTFVRGNLVFKDGKHAPAACGVPILA+
Sbjct: 204 LDTFVRGNLVFKDGKHAPAACGVPILAQ 287
Score = 32.0 bits (71), Expect = 0.24
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +2
Query: 407 EQLSLLWSQKPATLAGIASKGA 428
EQLSLLWSQKP G + KG+
Sbjct: 2 EQLSLLWSQKPCNTCGDSIKGS 67
>BP055471
Length = 413
Score = 102 bits (254), Expect(2) = 2e-23
Identities = 48/48 (100%), Positives = 48/48 (100%)
Frame = +2
Query: 162 FWGGLVPENALNTSILEGLLSAGVLGLKSFMCPSGINDFPMTTIDHIK 209
FWGGLVPENALNTSILEGLLSAGVLGLKSFMCPSGINDFPMTTIDHIK
Sbjct: 32 FWGGLVPENALNTSILEGLLSAGVLGLKSFMCPSGINDFPMTTIDHIK 175
Score = 23.9 bits (50), Expect(2) = 2e-23
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1
Query: 151 AAENELHVDV 160
AAENELHVDV
Sbjct: 1 AAENELHVDV 30
>TC16222 similar to UP|Q9FMP3 (Q9FMP3) Dihydropyrimidinase
(Dihydropyrimidine amidohydrolase) , partial (27%)
Length = 570
Score = 40.0 bits (92), Expect = 9e-04
Identities = 32/112 (28%), Positives = 54/112 (47%), Gaps = 4/112 (3%)
Frame = +2
Query: 377 DFLKAWGGISSLQFDLPVTWSYGKKHG-LTLEQLSLLWSQKPATLAGI-ASKGAIVVGNH 434
DF K G++ ++ + + W G +++ + S + A + I KGAI+ G+
Sbjct: 53 DFRKIPNGVNGIEERMHIVWDIMLDSGQISVTDYVRVTSTECAKVFNIYPKKGAILPGSD 232
Query: 435 ADIVVWHPELEFELNDDYPVFLKHPNL--SAYMGRRLSGKVLDTFVRGNLVF 484
ADI++ +P FE+ V H L + Y GRR GK+ T G +V+
Sbjct: 233 ADIIILNPNSSFEIT----VKSHHSRLDTNVYEGRRGKGKLEVTIAGGRIVW 376
>BG662368
Length = 470
Score = 40.0 bits (92), Expect = 9e-04
Identities = 31/85 (36%), Positives = 40/85 (46%), Gaps = 4/85 (4%)
Frame = +2
Query: 54 HSEDLEINEGKIVSITEGYGKQGNSKQEVVIDYGEAVIMPGLIDVHVHLDEP--GRTEWE 111
H D+ I +G IV++ K VID IMPG ID H HL+ +
Sbjct: 218 HVADVYIEDGIIVAVNPTINVGDEIK---VIDATGKFIMPGGIDPHTHLEFEFMNTVTVD 388
Query: 112 GFVTGTRAAAAGGVTTVVD--MPLN 134
F +G AA AGG T +D +PLN
Sbjct: 389 DFFSGQAAALAGGTTMHIDFVIPLN 463
>TC16221 similar to UP|Q9FMP3 (Q9FMP3) Dihydropyrimidinase
(Dihydropyrimidine amidohydrolase) , partial (20%)
Length = 494
Score = 38.5 bits (88), Expect = 0.003
Identities = 24/65 (36%), Positives = 36/65 (54%), Gaps = 2/65 (3%)
Frame = +1
Query: 426 KGAIVVGNHADIVVWHPELEFELNDDYPVFLKHPNL--SAYMGRRLSGKVLDTFVRGNLV 483
KGAI+ G+ ADI++ +P FE+ V H L + Y GRR GKV T G +V
Sbjct: 16 KGAILPGSDADIIILNPNSSFEIT----VKSHHSRLDTNVYEGRRGKGKVEVTIAGGRIV 183
Query: 484 FKDGK 488
+++ +
Sbjct: 184 WENNE 198
>AV408497
Length = 424
Score = 29.6 bits (65), Expect = 1.2
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 190 SFMCPSGINDFPMTTIDHIKEGLSVLAKYRRPLLVHAEIQQDSKNN 235
S +CP ND+ E L +L Y RP+ H E ++ S +
Sbjct: 23 SLVCPKNENDYSEQWALACGEILRILTHYNRPIYKHVEAERSSSGS 160
>AV765361
Length = 295
Score = 28.5 bits (62), Expect = 2.7
Identities = 13/29 (44%), Positives = 17/29 (57%)
Frame = -2
Query: 179 GLLSAGVLGLKSFMCPSGINDFPMTTIDH 207
G L G+ GL+SF CPS + P I+H
Sbjct: 279 GFLRKGLRGLESFPCPSWVVVKPKVYIEH 193
>TC16562 similar to GB|AAM78073.1|21928089|AY125563 AT4g24660/F22K18_140
{Arabidopsis thaliana;}, partial (29%)
Length = 621
Score = 28.5 bits (62), Expect = 2.7
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +1
Query: 356 IDLLTSDHSPTVPELKLLKEGDFLKAWGGISSL 388
IDLL HSPT+P++++ ++ FL+ W I SL
Sbjct: 37 IDLLLP-HSPTLPKVQIKQDIFFLRKWIAIWSL 132
>AV764870
Length = 485
Score = 28.1 bits (61), Expect = 3.5
Identities = 13/53 (24%), Positives = 25/53 (46%), Gaps = 2/53 (3%)
Frame = +2
Query: 155 ELHVDVGFWGGLVPENALNTSILEGLLSAGVLGLKSFMCPSGI--NDFPMTTI 205
++ + +GFWG ++P+ + + G+ F+ S I N P TT+
Sbjct: 290 QVPLHIGFWGNIIPKRLIKLQNSTTIPQIGIERWVKFVLTSSIKGNSIPTTTV 448
>TC9575 similar to UP|Q9XIS3 (Q9XIS3) Lectin-like protein kinase, partial
(10%)
Length = 764
Score = 26.9 bits (58), Expect = 7.8
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -2
Query: 23 GSFLDQGETCEQLLRVGIDFEKRKADPYTL 52
GS L +G CE L+ IDF++ K DP TL
Sbjct: 409 GSVLGKG*-CE*LMNFRIDFKESKVDPNTL 323
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.316 0.136 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,766,095
Number of Sequences: 28460
Number of extensions: 120296
Number of successful extensions: 513
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of query: 501
length of database: 4,897,600
effective HSP length: 94
effective length of query: 407
effective length of database: 2,222,360
effective search space: 904500520
effective search space used: 904500520
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0336.15