TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0336.12
         (267 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV422889                                                              115  8e-27
TC18792 similar to UP|AAD03372 (AAD03372) Expressed protein, par...   108  1e-24
TC17206 similar to UP|Q8S531 (Q8S531) Cytosolic aldehyde dehydro...    29  0.95
TC11609 similar to UP|Q8S532 (Q8S532) Cytosolic aldehyde dehydro...    28  1.2
TC13179 similar to UP|Q9ZVA9 (Q9ZVA9) F9K20.4 protein, partial (5%)    27  2.8
AV406688                                                               27  2.8
TC20127                                                                27  3.6
TC8599 homologue to UP|Q40478 (Q40478) EREBP-4, partial (26%)          27  3.6
TC7824 similar to UP|O04919 (O04919) Lipoxygenase  , partial (58%)     27  3.6
BP070611                                                               26  6.2
TC18635 similar to UP|Q9MA20 (Q9MA20) T5E21.13, partial (6%)           26  6.2

>AV422889 
          Length = 427

 Score =  115 bits (288), Expect = 8e-27
 Identities = 61/143 (42%), Positives = 85/143 (58%), Gaps = 1/143 (0%)
 Frame = +2

Query: 77  VGKYNFIPTTVNQLVVKCQFARRKLIWEILDSSKNKKFKAEVPWDRISAIRAFIEENKTE 136
           +G + +       LV KC FA+ KL+WE+LD     K K E+PW  I A++A   E+   
Sbjct: 2   IGTWEYKSRYEGDLVAKCYFAKHKLVWEVLDGCL--KNKIEIPWSDIMALKANYPEDAPG 175

Query: 137 ILEIELDEQPIFHKEINSQST-HTTWEISDHDFTGGHAMTYRIHHLEFASGDLGQHYENM 195
            LE+ L  +P+F +EIN Q   HT W+ +  DFTGG A   R H ++   G LG+H+E +
Sbjct: 176 TLEVVLARRPLFFREINPQPRKHTLWQATS-DFTGGQASIQRRHFMQCPQGLLGKHFEKL 352

Query: 196 LKCDERLMKLSQQPFPRLDSPYF 218
           ++CD RL  LSQQP   L+SPYF
Sbjct: 353 IQCDPRLNFLSQQPELVLESPYF 421


>TC18792 similar to UP|AAD03372 (AAD03372) Expressed protein, partial (41%)
          Length = 886

 Score =  108 bits (269), Expect = 1e-24
 Identities = 59/161 (36%), Positives = 86/161 (52%), Gaps = 1/161 (0%)
 Frame = +1

Query: 59  SSTTLKFAPATFYAKLLNVGKYNFIPTTVNQLVVKCQFARRKLIWEILDSSKNKKFKAEV 118
           S    K   + F   LL +G + +       LV KC FA+ KL+WE+L+     K K E+
Sbjct: 238 SGAAEKLKASNFPGSLLRIGLWEYKSRYEGDLVAKCYFAKHKLVWEVLEGGL--KSKIEI 411

Query: 119 PWDRISAIRAFIEENKTEILEIELDEQPIFHKEINSQST-HTTWEISDHDFTGGHAMTYR 177
            W  I A++A   EN    L + L  QP+F +E N Q   HT W+ +  DFT G    +R
Sbjct: 412 QWADIMALKAQCPENGLSTLTVVLGRQPLFFRETNPQPRKHTLWQATA-DFTNGQCSKHR 588

Query: 178 IHHLEFASGDLGQHYENMLKCDERLMKLSQQPFPRLDSPYF 218
           +H L+   G L +H+E +++CD RL  LS+QP   + SP+F
Sbjct: 589 LHFLQCPQGVLAKHFEKLIQCDLRLNFLSRQPEILMHSPHF 711


>TC17206 similar to UP|Q8S531 (Q8S531) Cytosolic aldehyde dehydrogenase
           RF2C, partial (28%)
          Length = 595

 Score = 28.9 bits (63), Expect = 0.95
 Identities = 13/44 (29%), Positives = 23/44 (51%)
 Frame = +1

Query: 217 YFGPPVLFKNIRDYNTVQHDELMEQVMALDRTQPFLSELKSTIN 260
           Y+  P +F N+++   +  DE+   VMAL + +     +KS  N
Sbjct: 58  YYIEPTIFSNVKEDMLIVQDEIFGPVMALKKFKTIEEGIKSANN 189


>TC11609 similar to UP|Q8S532 (Q8S532) Cytosolic aldehyde dehydrogenase
           RF2C, partial (25%)
          Length = 600

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 217 YFGPPVLFKNIRDYNTVQHDELMEQVMALDRTQPFLSELKSTINH 261
           Y+  P +F N+++   +  DE+   VMAL + +     +KS  NH
Sbjct: 26  YYIEPTIFSNVKEDMLIVQDEIFGPVMALKKFKTVEEAIKSA-NH 157


>TC13179 similar to UP|Q9ZVA9 (Q9ZVA9) F9K20.4 protein, partial (5%)
          Length = 533

 Score = 27.3 bits (59), Expect = 2.8
 Identities = 10/22 (45%), Positives = 15/22 (67%)
 Frame = +2

Query: 6   PFGLELSSSTMNEREPHLRNVC 27
           PFGL L+  ++NE++P L   C
Sbjct: 173 PFGLNLNKGSINEKQPRLHLHC 238


>AV406688 
          Length = 423

 Score = 27.3 bits (59), Expect = 2.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 54  SKKQNSSTTLKFAPATFYAKLLN 76
           S   NSS+T+ F P+TFY   LN
Sbjct: 253 SPPMNSSSTVSFFPSTFYPPQLN 321


>TC20127 
          Length = 582

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 11/48 (22%), Positives = 22/48 (44%), Gaps = 3/48 (6%)
 Frame = +1

Query: 146 PIFHKEIN---SQSTHTTWEISDHDFTGGHAMTYRIHHLEFASGDLGQ 190
           P++H+ +      ++H  W +   + T GH   Y    L  A+G+  +
Sbjct: 301 PLYHRAVELAEHDNSHQNWRVKAKNRTSGHVEEYAGKFLVVATGETAE 444


>TC8599 homologue to UP|Q40478 (Q40478) EREBP-4, partial (26%)
          Length = 632

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 19/59 (32%), Positives = 24/59 (40%)
 Frame = +3

Query: 3   SKPPFGLELSSSTMNEREPHLRNVCPKPPLGLKRTTSAMKEREKMWRKMQKSKKQNSST 61
           SKPP     SSS ++ R+P L    P    GLK   S  KE     +    S   +  T
Sbjct: 201 SKPP----RSSSNLSNRKPSLNISIPSINSGLKSNISQSKETSFSHQSSSSSSSSDHQT 365


>TC7824 similar to UP|O04919 (O04919) Lipoxygenase  , partial (58%)
          Length = 1675

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +3

Query: 42   KEREKMWRKMQ-KSKKQNSSTTLKFAPATFYAKLLNVGKYNFIPTTVNQLVVKCQFARRK 100
            K+ E  W KMQ +++   SSTTL +  +  +A  +N G+Y +    +N+  +  +F   K
Sbjct: 966  KKNEPWWPKMQTRAELIESSTTLIWTASALHA-AVNFGQYPYGGLILNRPTLSRRFMPEK 1142


>BP070611 
          Length = 486

 Score = 26.2 bits (56), Expect = 6.2
 Identities = 13/36 (36%), Positives = 18/36 (49%)
 Frame = -1

Query: 191 HYENMLKCDERLMKLSQQPFPRLDSPYFGPPVLFKN 226
           HY+  L+   RL + SQ+PF R+         LF N
Sbjct: 411 HYQTTLRTGMRLTRHSQEPFMRVSLKLIISRSLFSN 304


>TC18635 similar to UP|Q9MA20 (Q9MA20) T5E21.13, partial (6%)
          Length = 610

 Score = 26.2 bits (56), Expect = 6.2
 Identities = 13/42 (30%), Positives = 22/42 (51%)
 Frame = +3

Query: 223 LFKNIRDYNTVQHDELMEQVMALDRTQPFLSELKSTINHELS 264
           +F  IR+    Q DE+   ++ L RT+P   ++  T   E+S
Sbjct: 3   MFAKIRETTLAQDDEISRNIVGLARTRP---DIFGTTEEEVS 119


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,626,764
Number of Sequences: 28460
Number of extensions: 60282
Number of successful extensions: 320
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of query: 267
length of database: 4,897,600
effective HSP length: 89
effective length of query: 178
effective length of database: 2,364,660
effective search space: 420909480
effective search space used: 420909480
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)