TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0336.10
         (114 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV768281                                                               79  1e-16
TC18926 similar to AAQ63968 (AAQ63968) VAP27-1, partial (36%)          74  4e-15
TC10356 similar to GB|AAM62506.1|21553413|AY085274 VAMP (vesicle...    35  0.001
BP084803                                                               25  1.4
TC11162 similar to UP|Q94BZ6 (Q94BZ6) At1g12850/F13K23_8, partia...    25  2.4
CN825654                                                               25  2.4
BP065920                                                               24  3.1
AV765617                                                               24  3.1
TC12688                                                                24  3.1
TC16491 similar to GB|AAM62506.1|21553413|AY085274 VAMP (vesicle...    24  3.1
TC16581 similar to UP|Q9SEX5 (Q9SEX5) Ornithine carbamoyltransfe...    24  4.1
TC10233 similar to UP|Q84ZV0 (Q84ZV0) R 14 protein, partial (32%)      24  4.1
TC10068 homologue to UP|SPD1_PEA (Q9ZTR1) Spermidine synthase 1 ...    24  4.1
AV781023                                                               23  6.9
TC8076 similar to UP|FER2_ARATH (O04090) Ferredoxin 2, chloropla...    23  6.9
TC14343 similar to UP|O64438 (O64438) ARG10, complete                  23  9.1
AV409493                                                               23  9.1
TC14216 UP|Q84KK4 (Q84KK4) S-adenosyl-L-methionine: 2,7,4'-trihy...    23  9.1

>AV768281 
          Length = 575

 Score = 79.0 bits (193), Expect = 1e-16
 Identities = 42/119 (35%), Positives = 71/119 (59%), Gaps = 8/119 (6%)
 Frame = +3

Query: 1   MDHAEILQIEPAELTFLTE--KKDFCKLHLINKTTNYVAFRLRLSKPEKYGVTPREGGII 58
           M   ++L I+P EL F+ E  K+  C L L N+T  YVAF+++ + P+KY V P   G++
Sbjct: 114 MSTGDLLHIDPLELKFIFELKKQISCSLQLSNQTDEYVAFKVKTTNPKKYCVRPNT-GVV 290

Query: 59  MPQGTYDIIVSRKSDKLPPPGFECTDRFFIQSM----ALSVKDLFTE--NRGKRHVEEK 111
           +P+ T D+ V+ ++ K  PP  +C D+F +QS+     ++ KD+  E  N+   H+ E+
Sbjct: 291 LPRSTCDVTVTMQAQKEAPPDMQCKDKFLLQSVKVEDGVTAKDITAEMFNKEAGHIVEE 467


>TC18926 similar to AAQ63968 (AAQ63968) VAP27-1, partial (36%)
          Length = 419

 Score = 73.6 bits (179), Expect = 4e-15
 Identities = 36/91 (39%), Positives = 57/91 (62%), Gaps = 2/91 (2%)
 Frame = +1

Query: 1   MDHAEILQIEPAEL--TFLTEKKDFCKLHLINKTTNYVAFRLRLSKPEKYGVTPREGGII 58
           M    +L+I+P EL  TF  +K+  C L L NKT  YVAF+++ + P+KY V P   G++
Sbjct: 136 MSTGYLLRIDPLELKFTFQLKKQISCSLQLTNKTDEYVAFKVKTTNPKKYCVRPNT-GVV 312

Query: 59  MPQGTYDIIVSRKSDKLPPPGFECTDRFFIQ 89
           +P+ T D+ V+ ++ K  PP  +C D+F +Q
Sbjct: 313 LPRSTCDVKVTMQAQKEAPPDMQCKDKFLLQ 405


>TC10356 similar to GB|AAM62506.1|21553413|AY085274 VAMP (vesicle-associated
           membrane protein)-associated protein-like {Arabidopsis
           thaliana;}, partial (16%)
          Length = 434

 Score = 35.4 bits (80), Expect = 0.001
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +3

Query: 1   MDHAEILQIEPAEL--TFLTEKKDFCKLHLINKTTNYVAFR 39
           M    ++ + P EL   F  EK+ FC L ++N T NYVAF+
Sbjct: 312 MTATPLISVNPDELRFNFELEKQTFCDLKVLNNTQNYVAFK 434


>BP084803 
          Length = 314

 Score = 25.4 bits (54), Expect = 1.4
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 19  EKKDFCKLHLINKTTNYVAFRLRLSKPEKYGVTPREGGIIMP 60
           +KK+ C   +     + + F ++LS   K+G+ PRE  ++ P
Sbjct: 141 KKKNSCLALMHLPFNSSLQFLMKLSVDSKHGMDPREQLVVYP 266


>TC11162 similar to UP|Q94BZ6 (Q94BZ6) At1g12850/F13K23_8, partial (23%)
          Length = 589

 Score = 24.6 bits (52), Expect = 2.4
 Identities = 10/19 (52%), Positives = 12/19 (62%)
 Frame = -2

Query: 44 KPEKYGVTPREGGIIMPQG 62
          +P   G  PREGG +MP G
Sbjct: 66 QPALTGFFPREGGSVMPVG 10


>CN825654 
          Length = 580

 Score = 24.6 bits (52), Expect = 2.4
 Identities = 10/16 (62%), Positives = 12/16 (74%)
 Frame = -2

Query: 73  DKLPPPGFECTDRFFI 88
           +KLPPP FE  D FF+
Sbjct: 336 NKLPPPFFEPFDGFFL 289


>BP065920 
          Length = 509

 Score = 24.3 bits (51), Expect = 3.1
 Identities = 13/42 (30%), Positives = 20/42 (46%)
 Frame = +3

Query: 26  LHLINKTTNYVAFRLRLSKPEKYGVTPREGGIIMPQGTYDII 67
           +HLIN+  + +   +R  K EK  V  R   +  P G +  I
Sbjct: 69  IHLINRIADGLYT*IRTKKGEKRNVNSRHAVLPWPNGRHSEI 194


>AV765617 
          Length = 358

 Score = 24.3 bits (51), Expect = 3.1
 Identities = 13/32 (40%), Positives = 18/32 (55%), Gaps = 3/32 (9%)
 Frame = +2

Query: 20  KKDFCKLH---LINKTTNYVAFRLRLSKPEKY 48
           K D  K H   LIN+T    A R + +KP+K+
Sbjct: 104 KHDVAKYHTGDLINQT*AVYALRTKYNKPQKF 199


>TC12688 
          Length = 368

 Score = 24.3 bits (51), Expect = 3.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 14 LTFLTEKKDFCKLHLINK 31
          +T L EKK+F  +H+I K
Sbjct: 13 ITLLIEKKNFVPIHIITK 66


>TC16491 similar to GB|AAM62506.1|21553413|AY085274 VAMP (vesicle-associated
           membrane protein)-associated protein-like {Arabidopsis
           thaliana;}, partial (31%)
          Length = 569

 Score = 24.3 bits (51), Expect = 3.1
 Identities = 13/46 (28%), Positives = 24/46 (51%), Gaps = 8/46 (17%)
 Frame = +3

Query: 77  PPGFECTDRFFIQSMALSVK--------DLFTENRGKRHVEEKELK 114
           PP  +C D+F +QS  ++          D F+++ G   +EE +L+
Sbjct: 33  PPDMQCKDKFLLQSTIVNPNTDVDDLPPDTFSKDSG-NSIEELKLR 167


>TC16581 similar to UP|Q9SEX5 (Q9SEX5) Ornithine carbamoyltransferase
           (Ornithine carbamoyltransferase OOCT2) , partial (39%)
          Length = 613

 Score = 23.9 bits (50), Expect = 4.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 9   IEPAELTFLTEKKDFCKLHLINKTT 33
           +EP+ +T  TE KDF  ++  +K T
Sbjct: 215 VEPSSVTAKTEVKDFLHINDFDKDT 289


>TC10233 similar to UP|Q84ZV0 (Q84ZV0) R 14 protein, partial (32%)
          Length = 889

 Score = 23.9 bits (50), Expect = 4.1
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 83  TDRFFIQSMALSVKDLFTENRGK 105
           +D+FF+Q +  SV  L+T+ + K
Sbjct: 622 SDQFFVQILGKSVDQLWTDYKAK 690


>TC10068 homologue to UP|SPD1_PEA (Q9ZTR1) Spermidine synthase 1
           (Putrescine aminopropyltransferase 1) (SPDSY 1) ,
           partial (90%)
          Length = 1194

 Score = 23.9 bits (50), Expect = 4.1
 Identities = 11/37 (29%), Positives = 22/37 (58%)
 Frame = +3

Query: 60  PQGTYDIIVSRKSDKLPPPGFECTDRFFIQSMALSVK 96
           P+G+YD ++   SD +  P  E  ++ F  S+A +++
Sbjct: 555 PEGSYDAVIVDSSDPI-GPAQELFEKPFFSSVARALR 662


>AV781023 
          Length = 555

 Score = 23.1 bits (48), Expect = 6.9
 Identities = 8/23 (34%), Positives = 13/23 (55%)
 Frame = +1

Query: 58 IMPQGTYDIIVSRKSDKLPPPGF 80
          I P+      +++ S K+PPP F
Sbjct: 22 INPKKRTSFTINKNSQKMPPPNF 90


>TC8076 similar to UP|FER2_ARATH (O04090) Ferredoxin 2, chloroplast
           precursor, partial (78%)
          Length = 717

 Score = 23.1 bits (48), Expect = 6.9
 Identities = 9/19 (47%), Positives = 12/19 (62%)
 Frame = -2

Query: 75  LPPPGFECTDRFFIQSMAL 93
           LPPPG EC      Q++A+
Sbjct: 260 LPPPGPECKHHLDTQTLAV 204


>TC14343 similar to UP|O64438 (O64438) ARG10, complete
          Length = 1242

 Score = 22.7 bits (47), Expect = 9.1
 Identities = 18/55 (32%), Positives = 27/55 (48%), Gaps = 3/55 (5%)
 Frame = -1

Query: 57  IIMPQGTYDIIVSRKSDKLPPPGFECTDRFFIQSMALSV-KDLFTEN--RGKRHV 108
           I+ PQG   +   R   K PPP  E    +   S ++SV + L++ N   GK+ V
Sbjct: 774 ILWPQGQQTLPP*RLHPKFPPPQQELQ*SYS*DSHSISVLQHLWSRNILEGKKQV 610


>AV409493 
          Length = 426

 Score = 22.7 bits (47), Expect = 9.1
 Identities = 21/86 (24%), Positives = 29/86 (33%)
 Frame = +1

Query: 3  HAEILQIEPAELTFLTEKKDFCKLHLINKTTNYVAFRLRLSKPEKYGVTPREGGIIMPQG 62
          H   L  EP    F +   D   +H  N         + +S    +     EGG ++ Q 
Sbjct: 25 HFHFLAREPQSPPFTSSSSDLI-IHHCNGGLKTAFISISISIQIVFDSAEFEGGGVVKQC 201

Query: 63 TYDIIVSRKSDKLPPPGFECTDRFFI 88
                      LPPPG   T R F+
Sbjct: 202------------LPPPGMSSTTRRFL 243


>TC14216 UP|Q84KK4 (Q84KK4) S-adenosyl-L-methionine:
           2,7,4'-trihydroxyisoflavanone 4'-O-methyltransferase,
           complete
          Length = 1696

 Score = 22.7 bits (47), Expect = 9.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 76  PPPGFECTDRFFIQSMALSVKDL 98
           PP  F C  + +I + A++VK L
Sbjct: 293 PPENFTCQKKQWISAPAMAVKTL 361


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.139    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,750,178
Number of Sequences: 28460
Number of extensions: 19596
Number of successful extensions: 92
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of query: 114
length of database: 4,897,600
effective HSP length: 90
effective length of query: 24
effective length of database: 2,336,200
effective search space: 56068800
effective search space used: 56068800
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)