TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0335b.2
         (106 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC9554 similar to UP|Q7XYW5 (Q7XYW5) Seed specific protein Bn15D...    30  0.048
TC16625 similar to UP|RS12_BUCBP (Q89A65) 30S ribosomal protein ...    27  0.69
TC16236 homologue to UP|Q9SP01 (Q9SP01) Indole-3-acetic acid ind...    25  1.5
TC8122 similar to UP|Q94A43 (Q94A43) AT4g36780/C7A10_580, partia...    25  2.6
TC11175 weakly similar to GB|AAL06796.1|15809736|AY054135 AT3g60...    25  2.6
AV423426                                                               24  3.4
AV770969                                                               23  5.8
TC8570 similar to UP|Q9FLM5 (Q9FLM5) N-hydroxycinnamoyl/benzoylt...    23  5.8
TC16175 homologue to UP|Q8LK53 (Q8LK53) Ribosomal protein small ...    23  5.8
TC18716 similar to UP|Q8S9M1 (Q8S9M1) At2g42130/T24P15.4, partia...    23  5.8
TC14714 similar to UP|ARG2_PHAAU (P32292) Indole-3-acetic acid i...    23  5.8
TC8618 weakly similar to UP|Q852T2 (Q852T2) Vacuolar processing ...    23  5.8
TC8617 similar to UP|Q9SSZ4 (Q9SSZ4) Asparaginyl endopeptidase, ...    23  7.6
AV773577                                                               23  7.6
TC17658 homologue to UP|CLPA_PEA (P35100) ATP-dependent Clp prot...    23  7.6
CB829372                                                               23  7.6
BP037936                                                               23  7.6
TC9770 similar to GB|AAO63313.1|28950779|BT005249 At4g16060 {Ara...    23  9.9
TC9029 similar to UP|Q7X9G7 (Q7X9G7) Alpha-L-arabinofuranosidase...    23  9.9
AV766095                                                               23  9.9

>TC9554 similar to UP|Q7XYW5 (Q7XYW5) Seed specific protein Bn15D1B,
           partial (13%)
          Length = 750

 Score = 30.4 bits (67), Expect = 0.048
 Identities = 13/31 (41%), Positives = 18/31 (57%)
 Frame = +2

Query: 44  VPKIISGKTEDSSAIWVPHPRTGIYYPKGHE 74
           VP  +   TE S   W PHP+TG++ P G +
Sbjct: 278 VPDDVIQATE-SGKYWAPHPQTGVFGPPGEQ 367


>TC16625 similar to UP|RS12_BUCBP (Q89A65) 30S ribosomal protein S12,
           partial (13%)
          Length = 814

 Score = 26.6 bits (57), Expect = 0.69
 Identities = 9/27 (33%), Positives = 16/27 (58%)
 Frame = -3

Query: 51  KTEDSSAIWVPHPRTGIYYPKGHECVM 77
           K +  S +WV  PR   +Y +GH+ ++
Sbjct: 311 KIQHKSPVWVCPPRRADHYKEGHQSII 231


>TC16236 homologue to UP|Q9SP01 (Q9SP01) Indole-3-acetic acid induced
           protein ARG-2 homolog, partial (42%)
          Length = 553

 Score = 25.4 bits (54), Expect = 1.5
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = +3

Query: 34  AAAAESSEEGVPKIISGKTEDSSAI----WVPHPRTGIYYPKGHECVME 78
           AAA +S+  G      G  +  ++     WVP P TG Y P+  + V++
Sbjct: 63  AAATQSATRGSGMTKMGGEDKGASTYKVSWVPDPVTGYYKPENTKEVVD 209


>TC8122 similar to UP|Q94A43 (Q94A43) AT4g36780/C7A10_580, partial (74%)
          Length = 1505

 Score = 24.6 bits (52), Expect = 2.6
 Identities = 18/57 (31%), Positives = 23/57 (39%)
 Frame = -3

Query: 3   RGGITKSTLLILRGARRAENRVMKFSGTTAKAAAAESSEEGVPKIISGKTEDSSAIW 59
           RGG+T + L ILRG R     VM       K     S   G+     GK ++    W
Sbjct: 660 RGGVTGALLDILRGGRFVGMEVMLRINGRRKEEGLASMRVGL-----GKDDEVGLAW 505


>TC11175 weakly similar to GB|AAL06796.1|15809736|AY054135
           AT3g60690/T4C21_100 {Arabidopsis thaliana;}, partial
           (42%)
          Length = 692

 Score = 24.6 bits (52), Expect = 2.6
 Identities = 16/58 (27%), Positives = 20/58 (33%)
 Frame = +3

Query: 16  GARRAENRVMKFSGTTAKAAAAESSEEGVPKIISGKTEDSSAIWVPHPRTGIYYPKGH 73
           G  RA  RV    G     A+        P +      D   +WVP PR   +   GH
Sbjct: 138 GTERALARVRGGGGWGVTPASGSGDILQPPSVWGVAEGDGGRVWVPPPRRDHHPLPGH 311


>AV423426 
          Length = 460

 Score = 24.3 bits (51), Expect = 3.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 82  EGAARFTQTYWFRNDDGVGCTN 103
           E   RF + + FRN+DG G TN
Sbjct: 388 ETGLRFLEPF-FRNEDGTGLTN 326


>AV770969 
          Length = 371

 Score = 23.5 bits (49), Expect = 5.8
 Identities = 18/63 (28%), Positives = 28/63 (43%)
 Frame = -2

Query: 20  AENRVMKFSGTTAKAAAAESSEEGVPKIISGKTEDSSAIWVPHPRTGIYYPKGHECVMED 79
           ++  V+    T   A+ AE SE  V  + +     S + + PH  +  Y P+   CV E 
Sbjct: 211 SQGAVVSSRRTGLLASIAE*SESVVAVVATAALPISFSPF-PHSSSSFYLPRACVCVCEW 35

Query: 80  VPE 82
           V E
Sbjct: 34  VSE 26


>TC8570 similar to UP|Q9FLM5 (Q9FLM5)
            N-hydroxycinnamoyl/benzoyltransferase-like protein,
            partial (91%)
          Length = 1551

 Score = 23.5 bits (49), Expect = 5.8
 Identities = 11/30 (36%), Positives = 15/30 (49%)
 Frame = -2

Query: 1    MARGGITKSTLLILRGARRAENRVMKFSGT 30
            M   G  +STL+ L       NR+  FSG+
Sbjct: 1325 MTEAGKPRSTLMFLLSCP*ERNRITSFSGS 1236


>TC16175 homologue to UP|Q8LK53 (Q8LK53) Ribosomal protein small subunit 28
           kDa, complete
          Length = 737

 Score = 23.5 bits (49), Expect = 5.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 77  MEDVPEGAARFTQTYWFR 94
           +++ PEG AR    +WFR
Sbjct: 246 LKEKPEGCARGALMFWFR 299


>TC18716 similar to UP|Q8S9M1 (Q8S9M1) At2g42130/T24P15.4, partial (53%)
          Length = 620

 Score = 23.5 bits (49), Expect = 5.8
 Identities = 17/64 (26%), Positives = 26/64 (40%)
 Frame = +3

Query: 4   GGITKSTLLILRGARRAENRVMKFSGTTAKAAAAESSEEGVPKIISGKTEDSSAIWVPHP 63
           GG  ++ + I  GA  A  + M+          A     G   ++SGKT +   I V   
Sbjct: 171 GGCCRAMVQIQTGAPAAYAKEMERLSAKESLLLAFKDAGGFEALVSGKTTEYQKIDVNER 350

Query: 64  RTGI 67
            TG+
Sbjct: 351 ITGL 362


>TC14714 similar to UP|ARG2_PHAAU (P32292) Indole-3-acetic acid induced
           protein ARG2, partial (77%)
          Length = 621

 Score = 23.5 bits (49), Expect = 5.8
 Identities = 16/51 (31%), Positives = 23/51 (44%), Gaps = 6/51 (11%)
 Frame = +1

Query: 27  FSGTTAKAAAAESSEEGVPKIISGKTEDSSAI------WVPHPRTGIYYPK 71
           ++ T   A    +S  G  K+ S K+ +  A       WVP P TG Y P+
Sbjct: 184 YAATAQSAGRVGASMSG--KMGSTKSGEEKAAAREKVSWVPDPVTGYYKPE 330


>TC8618 weakly similar to UP|Q852T2 (Q852T2) Vacuolar processing enzyme-1b,
           partial (25%)
          Length = 503

 Score = 23.5 bits (49), Expect = 5.8
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = +2

Query: 1   MARGGITKSTLLILRGARRAENRVMKFSGTTAKAAAAESSEEGVPKIISG 50
           + +GG+    +++      A N+  K+ G    +    +  EGVPK  +G
Sbjct: 248 LKKGGLPNENIIVFMYDDIAYNKENKWPGKIFNSPNGPNVYEGVPKDYTG 397


>TC8617 similar to UP|Q9SSZ4 (Q9SSZ4) Asparaginyl endopeptidase, partial
           (44%)
          Length = 904

 Score = 23.1 bits (48), Expect = 7.6
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = +3

Query: 1   MARGGITKSTLLILRGARRAENRVMKFSGTTAKAAAAESSEEGVPKIISG 50
           + +GG+    +++      A N+  K+ G         +  EGVPK  +G
Sbjct: 282 LKKGGLPDENIIVFMYDDIANNKENKWPGKIFNKRNGPNVYEGVPKDYTG 431


>AV773577 
          Length = 452

 Score = 23.1 bits (48), Expect = 7.6
 Identities = 12/37 (32%), Positives = 20/37 (53%)
 Frame = +3

Query: 30  TTAKAAAAESSEEGVPKIISGKTEDSSAIWVPHPRTG 66
           T + AAA   S   +P + + +  D++A+   HPR G
Sbjct: 261 TAS*AAAVRVSSWPLPSLFNDR*LDTTALRKRHPRLG 371


>TC17658 homologue to UP|CLPA_PEA (P35100) ATP-dependent Clp protease
           ATP-binding subunit clpA homolog, chloroplast precursor
           , partial (33%)
          Length = 908

 Score = 23.1 bits (48), Expect = 7.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 71  KGHECVMEDVPEGAARFTQTYWF 93
           +GH+    +   G A   QTYWF
Sbjct: 627 RGHDSA*HE*IHGKAHCLQTYWF 695


>CB829372 
          Length = 486

 Score = 23.1 bits (48), Expect = 7.6
 Identities = 13/38 (34%), Positives = 19/38 (49%), Gaps = 2/38 (5%)
 Frame = -1

Query: 39  SSEEGVPKIISGKTEDSSAIWVPHPRTGIY--YPKGHE 74
           S++ GV +  +G   D S  WV    TG++   P G E
Sbjct: 123 SNKRGVTERFNGGCNDVSLSWVQITTTGVHPERPGGEE 10


>BP037936 
          Length = 518

 Score = 23.1 bits (48), Expect = 7.6
 Identities = 9/26 (34%), Positives = 13/26 (49%)
 Frame = +2

Query: 36  AAESSEEGVPKIISGKTEDSSAIWVP 61
           A E   +GVP + S    +   +WVP
Sbjct: 260 APELPADGVPPLASELVHEGRRVWVP 337


>TC9770 similar to GB|AAO63313.1|28950779|BT005249 At4g16060 {Arabidopsis
           thaliana;}, partial (91%)
          Length = 1173

 Score = 22.7 bits (47), Expect = 9.9
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -1

Query: 22  NRVMKFSGTTAKAAAAESSEEGVPKIISGKT 52
           +R++K S +  +A     + +G+P  +SG T
Sbjct: 537 HRILKNSSSL*RAQRTAGNSKGLPSSVSGTT 445


>TC9029 similar to UP|Q7X9G7 (Q7X9G7) Alpha-L-arabinofuranosidase, partial
            (73%)
          Length = 1636

 Score = 22.7 bits (47), Expect = 9.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 51   KTEDSSAIWVPHPRTGIY 68
            K  + + IWVP P  GIY
Sbjct: 1595 KGVEHNCIWVPPPIIGIY 1542


>AV766095 
          Length = 521

 Score = 22.7 bits (47), Expect = 9.9
 Identities = 11/46 (23%), Positives = 20/46 (42%)
 Frame = -3

Query: 19  RAENRVMKFSGTTAKAAAAESSEEGVPKIISGKTEDSSAIWVPHPR 64
           +A  R+   SGT   ++  +  EE      +     + A W+ +PR
Sbjct: 441 QASPRIHDTSGTLLSSSRTDGGEEDWSAAAAASHRSNLASWLMNPR 304


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.315    0.131    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,832,365
Number of Sequences: 28460
Number of extensions: 22002
Number of successful extensions: 101
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of query: 106
length of database: 4,897,600
effective HSP length: 82
effective length of query: 24
effective length of database: 2,563,880
effective search space: 61533120
effective search space used: 61533120
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)