BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0335a.8
(104 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC7794 homologue to UP|Q9M600 (Q9M600) Chlorophyll a/b binding p... 100 5e-23
TC14091 homologue to UP|Q93YG3 (Q93YG3) Chlorophyll a/b binding ... 100 5e-23
TC7803 homologue to UP|Q9XQB1 (Q9XQB1) LHCII type III chlorophyl... 100 5e-23
TC7802 homologue to UP|Q32904 (Q32904) Light harvesting protein,... 99 9e-23
TC7795 homologue to UP|CB2G_LYCES (P07369) Chlorophyll a-b bindi... 99 1e-22
TC12237 homologue to UP|CB23_LYCES (P27489) Chlorophyll a-b bind... 94 4e-21
TC8043 similar to PIR|S00443|S00443 chlorophyll a/b-binding prot... 87 3e-19
TC8005 similar to UP|Q9XQB2 (Q9XQB2) Chlorophyll a/b binding pro... 87 4e-19
TC10031 similar to UP|Q43382 (Q43382) PSI type II chlorophyll a/... 83 8e-18
TC13818 similar to UP|Q9C639 (Q9C639) Light-harvesting complex p... 83 8e-18
TC14513 homologue to UP|Q7M1K9 (Q7M1K9) Chlorophyll a/b-binding ... 82 1e-17
BP048304 79 9e-17
TC8263 homologue to UP|Q41038 (Q41038) Type II chlorophyll a/b b... 75 2e-15
AV774181 71 3e-14
TC7909 similar to UP|CB4C_ARATH (Q9S7W1) Chlorophyll a-b binding... 66 8e-13
BP039842 65 2e-12
CN825719 65 2e-12
AV773542 64 4e-12
AV779517 63 7e-12
AV772907 59 1e-10
>TC7794 homologue to UP|Q9M600 (Q9M600) Chlorophyll a/b binding protein
precursor, partial (97%)
Length = 2581
Score = 100 bits (248), Expect = 5e-23
Identities = 46/66 (69%), Positives = 56/66 (84%)
Frame = +1
Query: 27 YPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLDHFS 86
YPGG+ FDPL L+ DPEAFAELKVKE+KNGRLAM + GF++QA +TGKGP++NL DH S
Sbjct: 961 YPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLS 1137
Query: 87 DPFHNN 92
DP +NN
Sbjct: 1138 DPVNNN 1155
Score = 93.2 bits (230), Expect = 6e-21
Identities = 46/68 (67%), Positives = 54/68 (78%)
Frame = +1
Query: 27 YPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLDHFS 86
+PGG FDPL L+KDP+ A LKVKEIKNGRLAM + LGF++QA +TG GPV+NL H S
Sbjct: 2122 HPGGP-FDPLGLAKDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGDGPVENLAKHLS 2298
Query: 87 DPFHNNLL 94
DPF NNLL
Sbjct: 2299 DPFGNNLL 2322
Score = 41.6 bits (96), Expect = 2e-05
Identities = 27/75 (36%), Positives = 38/75 (50%)
Frame = +1
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + EP YL G+ +PG +D LS DPE FA+ + E+ + R AM+
Sbjct: 547 GPDRVKYLGPFSGEPPS-YLTGE--FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 717
Query: 62 AWLGFYMQAALTGKG 76
LG L G
Sbjct: 718 GALGCVFPELLARNG 762
>TC14091 homologue to UP|Q93YG3 (Q93YG3) Chlorophyll a/b binding protein
type II, complete
Length = 1116
Score = 100 bits (248), Expect = 5e-23
Identities = 51/77 (66%), Positives = 60/77 (77%)
Frame = +2
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG L D YPGGA FDPL L+ DP+AFAELKVKE+KNGRLAM + GF++QA +TGK
Sbjct: 596 PLGEGL--DPLYPGGA-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 766
Query: 76 GPVQNLLDHFSDPFHNN 92
GP+QNL DH +DP NN
Sbjct: 767 GPIQNLYDHVADPVANN 817
Score = 39.3 bits (90), Expect = 1e-04
Identities = 24/64 (37%), Positives = 36/64 (55%)
Frame = +2
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + E + YL G+ +PG +D LS DPE FA+ + E+ + R AM+
Sbjct: 209 GPDRPKYLGPFS-EQIPSYLTGE--FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 379
Query: 62 AWLG 65
LG
Sbjct: 380 GALG 391
>TC7803 homologue to UP|Q9XQB1 (Q9XQB1) LHCII type III chlorophyll a/b
binding protein, complete
Length = 1178
Score = 100 bits (248), Expect = 5e-23
Identities = 46/70 (65%), Positives = 54/70 (76%)
Frame = +1
Query: 23 GDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLL 82
G+ YPGG FDPL L+ DP FAELKVKEIKNGRLAM + GF++QA +TGKGP++NLL
Sbjct: 730 GNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 909
Query: 83 DHFSDPFHNN 92
DH DP NN
Sbjct: 910 DHLDDPVANN 939
Score = 42.4 bits (98), Expect = 1e-05
Identities = 25/64 (39%), Positives = 37/64 (57%)
Frame = +1
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + + YL G+ +PG +D LS DPEAFA+ + E+ +GR AM+
Sbjct: 325 GPDRVKYLGPFSAQTPS-YLTGE--FPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAML 495
Query: 62 AWLG 65
LG
Sbjct: 496 GALG 507
>TC7802 homologue to UP|Q32904 (Q32904) Light harvesting protein, complete
Length = 1268
Score = 99.4 bits (246), Expect = 9e-23
Identities = 45/77 (58%), Positives = 58/77 (74%)
Frame = +1
Query: 23 GDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLL 82
GD YPGG F+PL KD ++ ELK+KE+KNGRLAM+A LG+++Q +TG GP QNLL
Sbjct: 811 GDPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLL 990
Query: 83 DHFSDPFHNNLLGSLNF 99
DH +DP +NN+L SL F
Sbjct: 991 DHLADPVNNNVLTSLKF 1041
>TC7795 homologue to UP|CB2G_LYCES (P07369) Chlorophyll a-b binding protein
3C, chloroplast precursor (LHCII type I CAB-3C) (LHCP),
partial (97%)
Length = 1058
Score = 99.0 bits (245), Expect = 1e-22
Identities = 45/66 (68%), Positives = 56/66 (84%)
Frame = +2
Query: 27 YPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLDHFS 86
YPGG+ FDPL L+ DPEAFAELKVKE+KNGRLAM + GF++QA +TGKGP++NL DH +
Sbjct: 620 YPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA 796
Query: 87 DPFHNN 92
DP +NN
Sbjct: 797 DPVNNN 814
Score = 38.5 bits (88), Expect = 2e-04
Identities = 26/75 (34%), Positives = 37/75 (48%)
Frame = +2
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + E YL G+ +PG +D LS DPE FA+ + E+ + R AM+
Sbjct: 206 GPDRVKYLGPFSGESPS-YLTGE--FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 376
Query: 62 AWLGFYMQAALTGKG 76
LG L G
Sbjct: 377 GALGCVFPELLARNG 421
>TC12237 homologue to UP|CB23_LYCES (P27489) Chlorophyll a-b binding protein
13, chloroplast precursor (LHCII type III CAB-13),
partial (43%)
Length = 615
Score = 94.0 bits (232), Expect = 4e-21
Identities = 44/70 (62%), Positives = 53/70 (74%)
Frame = +3
Query: 23 GDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLL 82
G+ YPGG FDPL L+ DP FAELKVKEIKNGRLAM + GF++QA +TGKGP++NLL
Sbjct: 99 GNNLYPGGPYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 278
Query: 83 DHFSDPFHNN 92
D DP N+
Sbjct: 279 DPLDDPVANH 308
>TC8043 similar to PIR|S00443|S00443 chlorophyll a/b-binding protein type I
precursor (cab-6A) - tomato {Lycopersicon
esculentum;}, partial (97%)
Length = 979
Score = 87.4 bits (215), Expect = 3e-19
Identities = 43/73 (58%), Positives = 54/73 (73%), Gaps = 1/73 (1%)
Frame = +1
Query: 22 PGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGF-YMQAALTGKGPVQN 80
P YPGGA FDPL SKDP+ F E KVKEIKNGRLA++A++GF Q+A G GP++N
Sbjct: 526 PEKKKYPGGA-FDPLGYSKDPKKFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 702
Query: 81 LLDHFSDPFHNNL 93
L H +DP+HNN+
Sbjct: 703 LATHLADPWHNNI 741
>TC8005 similar to UP|Q9XQB2 (Q9XQB2) Chlorophyll a/b binding protein CP29,
complete
Length = 1116
Score = 87.0 bits (214), Expect = 4e-19
Identities = 39/72 (54%), Positives = 52/72 (72%)
Frame = +1
Query: 27 YPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLDHFS 86
YPGG+ FDPL L+ DPE A L++ EIK+ RLAM+A+LGF +QAA TGKGP+ N H S
Sbjct: 703 YPGGSFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLDNWATHLS 882
Query: 87 DPFHNNLLGSLN 98
DP H ++ + +
Sbjct: 883 DPLHTTIIDTFS 918
>TC10031 similar to UP|Q43382 (Q43382) PSI type II chlorophyll a/b-binding
protein, partial (34%)
Length = 604
Score = 82.8 bits (203), Expect = 8e-18
Identities = 37/74 (50%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Frame = +1
Query: 24 DINYPGGALFDPLNLSK-DPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLL 82
D+ YPGG FDP+ + PE L+ KEIKNGRLAM+A++GF+ QA TG+GP++NL+
Sbjct: 43 DVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAIYTGQGPIENLM 222
Query: 83 DHFSDPFHNNLLGS 96
H +DP H N+ +
Sbjct: 223 AHLADPGHCNIFSA 264
>TC13818 similar to UP|Q9C639 (Q9C639) Light-harvesting complex protein
(At1g45474/F2G19.4), partial (38%)
Length = 510
Score = 82.8 bits (203), Expect = 8e-18
Identities = 41/86 (47%), Positives = 58/86 (66%)
Frame = +3
Query: 12 EALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAA 71
E LEP YPGG L +PL L+KD + E K+KEIKNGRLAM+A LG ++QA+
Sbjct: 48 EGLEP---------GYPGGPLLNPLGLAKDIKNARESKLKEIKNGRLAMVAILGIFVQAS 200
Query: 72 LTGKGPVQNLLDHFSDPFHNNLLGSL 97
+T GP+ NL++H S+P+H ++ +L
Sbjct: 201 VTHVGPIDNLVEHLSNPWHKTVIQTL 278
>TC14513 homologue to UP|Q7M1K9 (Q7M1K9) Chlorophyll a/b-binding protein
(cab-11), complete
Length = 1025
Score = 82.4 bits (202), Expect = 1e-17
Identities = 40/77 (51%), Positives = 55/77 (70%)
Frame = +2
Query: 22 PGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNL 81
P ++ YPGG +F+PLN + EA K KE+ NGRLAM+A+LGF +Q +TGKGP NL
Sbjct: 584 PNEVGYPGG-IFNPLNFAPTEEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFDNL 748
Query: 82 LDHFSDPFHNNLLGSLN 98
L H SDP+HN ++ +L+
Sbjct: 749 LQHLSDPWHNTIVQTLS 799
Score = 38.9 bits (89), Expect = 1e-04
Identities = 26/66 (39%), Positives = 33/66 (49%), Gaps = 7/66 (10%)
Frame = +2
Query: 18 GIYLPG--DINYPGGAL-----FDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQA 70
G +LPG NY G+L FDPL L++DPE E+ NGR AM+ G +
Sbjct: 209 GEWLPGLASPNYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWAMLGVAGMLLPE 388
Query: 71 ALTGKG 76
LT G
Sbjct: 389 VLTNIG 406
>BP048304
Length = 398
Score = 79.3 bits (194), Expect = 9e-17
Identities = 37/64 (57%), Positives = 50/64 (77%)
Frame = -3
Query: 27 YPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLDHFS 86
YPGG+ FDPL + DPEAFAEL VK ++NGRLA+ + GF++QA +T KGP+++L DH S
Sbjct: 378 YPGGS-FDPLGPADDPEAFAEL*VKGLQNGRLALFSMFGFFVQAIVTRKGPLEDLADHLS 202
Query: 87 DPFH 90
DP +
Sbjct: 201 DPVY 190
>TC8263 homologue to UP|Q41038 (Q41038) Type II chlorophyll a/b binding
protein from photosystem I precursor, partial (98%)
Length = 1199
Score = 75.1 bits (183), Expect = 2e-15
Identities = 36/68 (52%), Positives = 44/68 (63%), Gaps = 1/68 (1%)
Frame = +3
Query: 24 DINYPGGALFDPLNL-SKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLL 82
D+ YPGG FDPL S P+ EL+ KEIKNGRLAM+A +G + Q TG GP+ NL
Sbjct: 651 DVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF 830
Query: 83 DHFSDPFH 90
H +DP H
Sbjct: 831 AHLADPGH 854
Score = 33.5 bits (75), Expect = 0.006
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +3
Query: 24 DINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKG 76
D + PG FDPL LS DPE+ E+ + R AM+ G ++ LT G
Sbjct: 309 DGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIG 467
>AV774181
Length = 441
Score = 70.9 bits (172), Expect = 3e-14
Identities = 34/52 (65%), Positives = 43/52 (82%)
Frame = -3
Query: 28 PGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQ 79
PGG+ FDPL L+ DPEAFAELKVK +KNGRLAM + GF++ A +TGKGP++
Sbjct: 421 PGGS-FDPLALADDPEAFAELKVKGLKNGRLAMFSIFGFFVPAIVTGKGPLE 269
>TC7909 similar to UP|CB4C_ARATH (Q9S7W1) Chlorophyll a-b binding protein
CP29.3, chloroplast precursor (LHCII protein 4.3)
(LHCB4.3), partial (80%)
Length = 1155
Score = 66.2 bits (160), Expect = 8e-13
Identities = 31/55 (56%), Positives = 40/55 (72%)
Frame = +3
Query: 27 YPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNL 81
YPGG FDPL L+ DPE L++ EIK+ RLAM+ +L F +QAA+TGKGP+ L
Sbjct: 774 YPGGKFFDPLGLANDPEEKERLQLAEIKHSRLAMVVFLIFAIQAAVTGKGPISFL 938
>BP039842
Length = 441
Score = 65.1 bits (157), Expect = 2e-12
Identities = 31/62 (50%), Positives = 39/62 (62%)
Frame = -2
Query: 27 YPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLDHFS 86
YPGG+ FDPL L+ DPE A L + I RLA++A+LGF + AA G+GP N HF
Sbjct: 374 YPGGSFFDPLGLAADPEKKATLPLAGISTARLALVAFLGFAVPAAAPGQGPFDNWATHFE 195
Query: 87 DP 88
P
Sbjct: 194 *P 189
>CN825719
Length = 679
Score = 65.1 bits (157), Expect = 2e-12
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +2
Query: 1 VGPEYARYCGSEALEPLGIYLPGDINYP 28
VGPEYARYCGSEALEPLGIYLPGDINYP
Sbjct: 596 VGPEYARYCGSEALEPLGIYLPGDINYP 679
>AV773542
Length = 434
Score = 63.9 bits (154), Expect = 4e-12
Identities = 28/43 (65%), Positives = 37/43 (85%)
Frame = -3
Query: 42 PEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLDH 84
P+AFAELKVKE+ +GRLAM + GF++QA +TG+GP+QNL DH
Sbjct: 342 PDAFAELKVKEL*SGRLAMFSLFGFFVQALVTGQGPIQNLYDH 214
>AV779517
Length = 514
Score = 63.2 bits (152), Expect = 7e-12
Identities = 32/60 (53%), Positives = 40/60 (66%)
Frame = -3
Query: 30 GALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLDHFSDPF 89
G FDP L+KDP+ A LKVK I+N RLAM + G ++ A +TG GPV+NL H DPF
Sbjct: 392 GGPFDPCGLAKDPDPAALLKVKGIQNRRLAMFSMPGCFIPA*VTGDGPVENLALHLRDPF 213
>AV772907
Length = 471
Score = 58.9 bits (141), Expect = 1e-10
Identities = 27/38 (71%), Positives = 33/38 (86%)
Frame = -1
Query: 41 DPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPV 78
DPEAFAELKVKE+KNGRLAM + GF++ A +TGKGP+
Sbjct: 465 DPEAFAELKVKELKNGRLAMFSISGFFVLAIVTGKGPL 352
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.144 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,750,113
Number of Sequences: 28460
Number of extensions: 18590
Number of successful extensions: 144
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of query: 104
length of database: 4,897,600
effective HSP length: 80
effective length of query: 24
effective length of database: 2,620,800
effective search space: 62899200
effective search space used: 62899200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)
Lotus: description of TM0335a.8