BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0335a.6
(109 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV409763 80 4e-17
AV410889 28 0.30
TC8112 similar to UP|ODPA_PEA (P52902) Pyruvate dehydrogenase E1... 27 0.51
BI418295 27 0.67
TC9986 similar to UP|Q9M427 (Q9M427) Oligouridylate binding prot... 27 0.67
TC13186 weakly similar to UP|Q8W2C0 (Q8W2C0) Functional candidat... 27 0.67
BP033714 26 1.1
TC8301 25 1.5
TC13845 weakly similar to GB|AAM98310.1|22655436|AY142046 At2g19... 25 1.9
AU089570 25 2.5
AW428659 25 2.5
AV777202 25 2.5
TC13222 weakly similar to UP|Q84UA9 (Q84UA9) Peroxidase 1, parti... 24 3.3
TC15981 similar to UP|ERF3_ARATH (O80339) Ethylene responsive el... 24 4.3
TC18321 similar to UP|ORN_ARATH (Q9ZVE0) Probable oligoribonucle... 24 4.3
TC15155 similar to UP|Q93XW1 (Q93XW1) 14-3-3 protein, partial (53%) 24 4.3
TC8052 similar to GB|AAP13431.1|30023796|BT006323 At5g02530 {Ara... 24 4.3
BI418126 24 4.3
TC9217 similar to UP|Q9XQC7 (Q9XQC7) GrpE protein homolog, parti... 23 5.6
TC19077 similar to UP|Q39127 (Q39127) TINY mRNA, partial (29%) 23 5.6
>AV409763
Length = 426
Score = 80.5 bits (197), Expect = 4e-17
Identities = 39/71 (54%), Positives = 50/71 (69%)
Frame = +2
Query: 16 PRPRLVSQPLTESNYNTWSRAVLVALSMKNKVPFVDGSLPRPEEDNPQLNSWIRNNNVVI 75
P LVSQ LT NY +WSRA+ +AL KNK+ FVD S+ P+E +P + W RNNN+V
Sbjct: 206 PGISLVSQVLTGDNYRSWSRAMRMALIAKNKLGFVDASILVPDELDPLFHPWQRNNNIVA 385
Query: 76 SWIFNAVSKDI 86
SWI N+VSKD+
Sbjct: 386 SWILNSVSKDL 418
>AV410889
Length = 436
Score = 27.7 bits (60), Expect = 0.30
Identities = 16/52 (30%), Positives = 24/52 (45%), Gaps = 5/52 (9%)
Frame = +2
Query: 9 LPSSFRWPRPRLVSQPLTESNYNTWSRA-----VLVALSMKNKVPFVDGSLP 55
+PSS+ +P P + PL S+ N + RA S N P V ++P
Sbjct: 164 IPSSYEFPEPETLPSPLLLSSINGFKRADPSTMATFNSSSSNSDPSVASNMP 319
>TC8112 similar to UP|ODPA_PEA (P52902) Pyruvate dehydrogenase E1 component
alpha subunit, mitochondrial precursor (PDHE1-A) ,
partial (90%)
Length = 1816
Score = 26.9 bits (58), Expect = 0.51
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1
Query: 6 QSFLPSSFRWPR 17
QSF+PSS RWPR
Sbjct: 316 QSFIPSSARWPR 351
>BI418295
Length = 523
Score = 26.6 bits (57), Expect = 0.67
Identities = 7/24 (29%), Positives = 16/24 (66%)
Frame = +2
Query: 60 DNPQLNSWIRNNNVVISWIFNAVS 83
+NP +WI+ +++V +W+ +S
Sbjct: 125 ENPAYTTWIKQDSMVFTWLLTTLS 196
>TC9986 similar to UP|Q9M427 (Q9M427) Oligouridylate binding protein, partial
(46%)
Length = 1150
Score = 26.6 bits (57), Expect = 0.67
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 38 LVALSMKNKVPFVDGSLPRPEEDNPQLNS 66
L ALS K +PF++ S PR +N N+
Sbjct: 1076 LSALSRKT*IPFLESSNPRSRSNNTNYNT 990
>TC13186 weakly similar to UP|Q8W2C0 (Q8W2C0) Functional candidate
resistance protein KR1, partial (6%)
Length = 586
Score = 26.6 bits (57), Expect = 0.67
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 33 WSRAVLVALSMKNKVPFVDGSLPRPEEDNPQLNS 66
+S + ALS K + F+D LPRP++ +NS
Sbjct: 148 FSGDLYTALSDKGILTFIDDGLPRPDDIMSTVNS 249
>BP033714
Length = 469
Score = 25.8 bits (55), Expect = 1.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 23 QPLTESNYNTWSRAVLVALSMKNKVP 48
+PL ESNY R + +A+ +K K+P
Sbjct: 457 KPLKESNYINVDRILNIAVVLKEKLP 380
>TC8301
Length = 1243
Score = 25.4 bits (54), Expect = 1.5
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +2
Query: 28 SNYNTWSRAVLVALSMKNKVPFVDGSLPRPEEDNPQLNSWIRNNNVVISWIFNAVSKDIT 87
SN++ W + L N +P +DG RP + + W ++ ++ + AV+ +
Sbjct: 536 SNFSLWKLKIKAILRKDNCLPAIDG---RPADITD--DKWKEMDDNAVANLHLAVADSVL 700
Query: 88 TSM-YSDTASEIYHGL 102
+S+ TA EI+ L
Sbjct: 701 SSIAEKKTAKEIWDTL 748
>TC13845 weakly similar to GB|AAM98310.1|22655436|AY142046
At2g19080/T20K24.9 {Arabidopsis thaliana;}, partial
(39%)
Length = 485
Score = 25.0 bits (53), Expect = 1.9
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +2
Query: 64 LNSWIRNNNVVISWIFNAVSKDITTSMYSDTASEIYH 100
L WI V+ +W+ +A++ ++ S +A IY+
Sbjct: 296 LPDWISTKAVLTTWLADALAFELWIGCESSSAHSIYY 406
>AU089570
Length = 544
Score = 24.6 bits (52), Expect = 2.5
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Frame = -1
Query: 28 SNYNTWSRAVLVALSMKNKVPFVDGSLPRPEEDNPQLNSWIRNNNV------VISWIFNA 81
S N++S V+ +S+K++ G + N + + W+ ++ +ISW+ N
Sbjct: 253 STDNSYSVEVVSRVSLKSETLTCIGFIL----SNSRFSDWLIASSACISMESLISWLKNX 86
Query: 82 VSKDITTSMYS 92
S DIT +S
Sbjct: 85 TSSDITPRPFS 53
>AW428659
Length = 281
Score = 24.6 bits (52), Expect = 2.5
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 66 SWIRNNNVVISWIFN 80
SW R N V +WIFN
Sbjct: 166 SWSRTNLVFFTWIFN 210
>AV777202
Length = 421
Score = 24.6 bits (52), Expect = 2.5
Identities = 7/37 (18%), Positives = 21/37 (55%)
Frame = +3
Query: 60 DNPQLNSWIRNNNVVISWIFNAVSKDITTSMYSDTAS 96
+NP W + ++ + +W+ +++S + ++ + T S
Sbjct: 249 ENPAYQVWDQQDSALFTWLLSSLSSSVLPTVVNCTQS 359
>TC13222 weakly similar to UP|Q84UA9 (Q84UA9) Peroxidase 1, partial (41%)
Length = 421
Score = 24.3 bits (51), Expect = 3.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 46 KVPFVDGSLPRPEEDNPQLNSWIRNNNV 73
K V G+LP+P + QLN+ N+N+
Sbjct: 5 KASRVAGNLPKPNFNLNQLNTMFSNHNL 88
>TC15981 similar to UP|ERF3_ARATH (O80339) Ethylene responsive element
binding factor 3 (AtERF3), partial (45%)
Length = 671
Score = 23.9 bits (50), Expect = 4.3
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 16 PRPRLVSQPLTESN 29
PRPR +S PLT+S+
Sbjct: 389 PRPRRISPPLTKSS 430
>TC18321 similar to UP|ORN_ARATH (Q9ZVE0) Probable oligoribonuclease ,
partial (78%)
Length = 846
Score = 23.9 bits (50), Expect = 4.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 67 WIRNNNVVISWIFNAVSKDITTSMY 91
W+ N +V+S FNA S I S++
Sbjct: 696 WLENIGLVVSKFFNAFSDIIQCSVF 622
>TC15155 similar to UP|Q93XW1 (Q93XW1) 14-3-3 protein, partial (53%)
Length = 548
Score = 23.9 bits (50), Expect = 4.3
Identities = 15/53 (28%), Positives = 26/53 (48%), Gaps = 8/53 (15%)
Frame = -3
Query: 10 PSSFRWPRPRLVSQPLTESNYNTWSRA--------VLVALSMKNKVPFVDGSL 54
P S R P+P + P T + + W R VL+A M+ +PF++ ++
Sbjct: 216 PPSRRRPQPPRRALPCTGTFHELWMRLPLSKLLK*VLLAQKMEIALPFLEETM 58
>TC8052 similar to GB|AAP13431.1|30023796|BT006323 At5g02530 {Arabidopsis
thaliana;}, partial (55%)
Length = 1389
Score = 23.9 bits (50), Expect = 4.3
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -1
Query: 5 CQSFLPSSFRWPRPRLVSQP 24
C P RWPRPR S P
Sbjct: 804 CPRPRPLPLRWPRPRPPSPP 745
>BI418126
Length = 532
Score = 23.9 bits (50), Expect = 4.3
Identities = 17/62 (27%), Positives = 30/62 (47%)
Frame = +3
Query: 28 SNYNTWSRAVLVALSMKNKVPFVDGSLPRPEEDNPQLNSWIRNNNVVISWIFNAVSKDIT 87
S+ + +SR LVA S + VDG L ++P+ + N+ ++ I N + I+
Sbjct: 144 SSLSLYSRPKLVAGSAEGYSGHVDGKLREARMNHPKGITVDDRGNIYVADITNMAIRKIS 323
Query: 88 TS 89
S
Sbjct: 324 DS 329
>TC9217 similar to UP|Q9XQC7 (Q9XQC7) GrpE protein homolog, partial (48%)
Length = 993
Score = 23.5 bits (49), Expect = 5.6
Identities = 19/55 (34%), Positives = 25/55 (44%), Gaps = 6/55 (10%)
Frame = -2
Query: 50 VDGSLPRPEEDNPQLNSWI---RNNNVVISWIFNAV---SKDITTSMYSDTASEI 98
+DG R P LNSWI +N+V S I + SK+ T T SE+
Sbjct: 431 IDGRKRRSPS*KPFLNSWIMMPSSNSVESSRIIASCSNGSKNFPTVSTGSTPSEV 267
>TC19077 similar to UP|Q39127 (Q39127) TINY mRNA, partial (29%)
Length = 586
Score = 23.5 bits (49), Expect = 5.6
Identities = 9/16 (56%), Positives = 12/16 (74%)
Frame = +2
Query: 48 PFVDGSLPRPEEDNPQ 63
P + GSLPRPE +P+
Sbjct: 47 PDLAGSLPRPESKSPR 94
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.316 0.130 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,336,170
Number of Sequences: 28460
Number of extensions: 31185
Number of successful extensions: 182
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of query: 109
length of database: 4,897,600
effective HSP length: 85
effective length of query: 24
effective length of database: 2,478,500
effective search space: 59484000
effective search space used: 59484000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)
Lotus: description of TM0335a.6