BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0334a.6
(203 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC10371 141 9e-35
AU089513 98 9e-22
AV774440 62 9e-11
TC8625 similar to UP|O23062 (O23062) CODED for BY A. THALIANA CD... 28 1.4
BI419419 27 2.5
TC17200 similar to UP|Q84VX5 (Q84VX5) At4g02100, partial (27%) 26 4.2
TC7990 similar to UP|Q7X9B3 (Q7X9B3) 9/13 hydroperoxide lyase, p... 26 4.2
AV764807 26 5.5
TC13290 similar to UP|Q94AD8 (Q94AD8) T10F18_70/T10F18_70 (At5g2... 25 7.1
TC12598 similar to UP|Q9SUF0 (Q9SUF0) Nodulin-like protein, part... 25 7.1
>TC10371
Length = 823
Score = 141 bits (355), Expect = 9e-35
Identities = 71/183 (38%), Positives = 107/183 (57%), Gaps = 4/183 (2%)
Frame = +3
Query: 25 FNRSSGRAGKPTVKWTEARIQDLPEVPENNLESSQGKCKEGETIRDPSQLE----FEARS 80
F+R G T +W AR + +Q + G+ R P LE FEA+S
Sbjct: 12 FSRLLDPKGSKTSQWIAARN*SMDRSSNREHRDNQDRRASGK--RGPDILEWKWQFEAKS 185
Query: 81 TKDGAWYDVEAFLAHRFVGTGEAEVRVRFVGFGASEDEWVNIKDSVRERSVPFESTDCSY 140
KD AW+DV ++ ++ GT E EV VR+ G+ ++EWVN+K+ +RERS+P E + C
Sbjct: 186 KKDLAWHDVGTWVNFKYSGTRELEVLVRYAGYDKVDEEWVNVKNEMRERSIPLEPSQCHK 365
Query: 141 LNVGDPVLCFQERRDQAIYYDARILEIQRRMHDIRGCRCLILVRYDHDNTEEKVRLRRLC 200
+ GD +C QER A+Y+DAR++ IQRR HD C+C+ VR+ HDN+EE++ +++
Sbjct: 366 VKDGDLAVCLQERDHYALYFDARVVRIQRRQHDATDCKCIFTVRFLHDNSEEEIDWKKVY 545
Query: 201 RRP 203
RP
Sbjct: 546 YRP 554
>AU089513
Length = 334
Score = 98.2 bits (243), Expect = 9e-22
Identities = 46/79 (58%), Positives = 55/79 (69%)
Frame = +2
Query: 72 SQLEFEARSTKDGAWYDVEAFLAHRFVGTGEAEVRVRFVGFGASEDEWVNIKDSVRERSV 131
S L FEARSTKD AW+DV L +R + TGE E RVR+ GFG EDEWVN+K VR+RS
Sbjct: 95 SDLAFEARSTKDLAWHDVSMLLNYRVLSTGELEARVRYAGFGKGEDEWVNVKYGVRDRSX 274
Query: 132 PFESTDCSYLNVGDPVLCF 150
P E ++C + GD VLCF
Sbjct: 275 PLEPSECHKVKDGDLVLCF 331
>AV774440
Length = 561
Score = 61.6 bits (148), Expect = 9e-11
Identities = 25/48 (52%), Positives = 35/48 (72%)
Frame = -1
Query: 144 GDPVLCFQERRDQAIYYDARILEIQRRMHDIRGCRCLILVRYDHDNTE 191
GD VLCF R D A+Y+DAR++ I RR+HD C+C+ VR+ HD++E
Sbjct: 558 GDLVLCFLNRGDYALYFDARVVRIHRRLHDPTDCKCIFTVRFLHDHSE 415
>TC8625 similar to UP|O23062 (O23062) CODED for BY A. THALIANA CDNA
N96903, partial (59%)
Length = 844
Score = 27.7 bits (60), Expect = 1.4
Identities = 17/57 (29%), Positives = 22/57 (37%)
Frame = +2
Query: 22 TASFNRSSGRAGKPTVKWTEARIQDLPEVPENNLESSQGKCKEGETIRDPSQLEFEA 78
T S + + P V T R D + E + C EG T R+P L F A
Sbjct: 23 TVSASSPASSPPSPAVALTRDRAADAARIKELLQKGDLVVCPEGTTCREPFLLRFSA 193
>BI419419
Length = 501
Score = 26.9 bits (58), Expect = 2.5
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +3
Query: 71 PSQLEFEARST-KDGAWYDVEAFLAH-RFVGTGEAEVRVR 108
PS LE+ A++ DG+W D E F AH R + T + +R
Sbjct: 159 PSSLEWIAKNQLADGSWGDSELFSAHDRIINTLACVIALR 278
>TC17200 similar to UP|Q84VX5 (Q84VX5) At4g02100, partial (27%)
Length = 850
Score = 26.2 bits (56), Expect = 4.2
Identities = 18/53 (33%), Positives = 25/53 (46%)
Frame = +2
Query: 122 IKDSVRERSVPFESTDCSYLNVGDPVLCFQERRDQAIYYDARILEIQRRMHDI 174
IKD+ + +S S LN+ D L R DQA+ AR L RR ++
Sbjct: 338 IKDARSLIATQEQSEIASALNLLDAALAISPRLDQALELRARSLLYLRRFKEV 496
>TC7990 similar to UP|Q7X9B3 (Q7X9B3) 9/13 hydroperoxide lyase, partial
(24%)
Length = 599
Score = 26.2 bits (56), Expect = 4.2
Identities = 14/44 (31%), Positives = 24/44 (53%), Gaps = 1/44 (2%)
Frame = +1
Query: 76 FEARSTKDGAWYD-VEAFLAHRFVGTGEAEVRVRFVGFGASEDE 118
++ +TKD ++ E F+ HRFVG GE ++ + G +E
Sbjct: 52 YQPFATKDPKVFENPEEFVGHRFVGEGEKLLKYVYWSNGRETEE 183
>AV764807
Length = 529
Score = 25.8 bits (55), Expect = 5.5
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 6/31 (19%)
Frame = -1
Query: 48 PEVPENNLESSQGKCKE------GETIRDPS 72
PE P NLE+ G C+ G+ + DP+
Sbjct: 328 PEAPHTNLEAGTGSCRRILSTQ*GDMLPDPN 236
>TC13290 similar to UP|Q94AD8 (Q94AD8) T10F18_70/T10F18_70
(At5g21040/T10F18_70), partial (12%)
Length = 540
Score = 25.4 bits (54), Expect = 7.1
Identities = 14/39 (35%), Positives = 22/39 (55%), Gaps = 1/39 (2%)
Frame = +1
Query: 141 LNVG-DPVLCFQERRDQAIYYDARILEIQRRMHDIRGCR 178
+N+G D ++C E I+ LEI+RR+ +RG R
Sbjct: 112 VNIGADRIVCGGEEGVVRIWNFTEALEIERRVRALRGIR 228
>TC12598 similar to UP|Q9SUF0 (Q9SUF0) Nodulin-like protein, partial (8%)
Length = 349
Score = 25.4 bits (54), Expect = 7.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 101 GEAEVRVRFVGFGASEDEWVNIKDSVRERSVPFES 135
G+++ RV G G+ E + IKD + S FES
Sbjct: 65 GKSQDRVNTTGAGSDEGPALPIKDRAKSGSYVFES 169
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.137 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,214,136
Number of Sequences: 28460
Number of extensions: 38885
Number of successful extensions: 151
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of query: 203
length of database: 4,897,600
effective HSP length: 86
effective length of query: 117
effective length of database: 2,450,040
effective search space: 286654680
effective search space used: 286654680
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)
Lotus: description of TM0334a.6