BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0331a.1
(602 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV421890 136 1e-32
BP085186 74 9e-14
BP034655 37 0.009
TC12218 37 0.009
TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly pr... 37 0.012
TC15421 similar to GB|AAL36081.1|17380636|AY063731 AT3g49800/T16... 36 0.016
TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (... 35 0.046
TC14994 similar to UP|O82469 (O82469) Protein phosphatase-2C , p... 34 0.078
TC19663 similar to UP|Q8H6S8 (Q8H6S8) Translation initiation fac... 34 0.078
TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, ... 34 0.078
TC8203 similar to UP|Q8L9C3 (Q8L9C3) Copia-like retroelement pol... 33 0.13
AV424050 33 0.17
AV416122 33 0.17
TC10506 similar to UP|Q9X5B4 (Q9X5B4) Lactoferrin-binding protei... 32 0.23
TC9459 similar to AAQ23982 (AAQ23982) Transcription factor Rap21... 32 0.39
TC15611 homologue to UP|Q40209 (Q40209) RAB5A, partial (56%) 31 0.51
TC9118 similar to UP|Q84JE4 (Q84JE4) Squamosa promoter binding l... 31 0.51
BP038960 31 0.51
AV410716 31 0.51
TC11270 similar to UP|Q9LM88 (Q9LM88) F2D10.15, partial (9%) 31 0.51
>AV421890
Length = 366
Score = 136 bits (342), Expect = 1e-32
Identities = 72/123 (58%), Positives = 90/123 (72%), Gaps = 4/123 (3%)
Frame = +1
Query: 298 HSETEKNPAPKRRKKNQSSEKTAEKATIQTPLEKFTTKGANQYG----SSSAPPPSWKNE 353
HS TE +P KR +KN+ E K + Q +EKF K ++ G SSSAPP +WKN
Sbjct: 4 HSGTETDPPAKRNRKNKVVE--TPKGSTQYSMEKFMVKTSSDMGNKQVSSSAPPTTWKNT 177
Query: 354 LKEFEDMTSEEITSLWDSRINFNSLVETNLVFEADKEKMRKIGLQEACQAVMTKSLEIAA 413
LKEF+++ SEE+TSLWDSRINFN+LVETNLVF A +E + KIGL EACQA++TK LEI+A
Sbjct: 178 LKEFQELISEELTSLWDSRINFNALVETNLVFGAYRENITKIGLPEACQALLTKGLEISA 357
Query: 414 ISK 416
ISK
Sbjct: 358 ISK 366
>BP085186
Length = 388
Score = 73.6 bits (179), Expect = 9e-14
Identities = 41/84 (48%), Positives = 53/84 (62%), Gaps = 17/84 (20%)
Frame = -1
Query: 535 KAKEQILFLNPDVPIKTEGVDPYARIIEGKLITP-------NFDEEEEEEEQEEEEDKE- 586
+A QI FL+PD+ I EG +PYARI+ GKLI+P N +EEEEEEE+EEEE++E
Sbjct: 385 QALNQISFLHPDLAINLEGSNPYARIVNGKLISPDNADGEGNEEEEEEEEEEEEEEEEEE 206
Query: 587 ---------NNNNNNNNKEGEGES 601
N N N +EGEGE+
Sbjct: 205 EEAEPEEEKNEEENVNTQEGEGEN 134
>BP034655
Length = 517
Score = 37.0 bits (84), Expect = 0.009
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = +1
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKEGEGE 600
+EEEEEEE+EEEE++E + +++E E E
Sbjct: 163 EEEEEEEEEEEEEEEEEEEDEEDDEEDEDE 252
Score = 35.8 bits (81), Expect = 0.021
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +1
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKEGE 598
DEEEEEEE+EEEE++E +E E
Sbjct: 142 DEEEEEEEEEEEEEEEEEEEEEEEEEDE 225
Score = 35.0 bits (79), Expect = 0.035
Identities = 14/32 (43%), Positives = 21/32 (64%)
Frame = +1
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKEGEGESN 602
D++EEEEE+EEEE++E +E E E +
Sbjct: 136 DDDEEEEEEEEEEEEEEEEEEEEEEEEEDEED 231
Score = 34.7 bits (78), Expect = 0.046
Identities = 14/30 (46%), Positives = 21/30 (69%)
Frame = +1
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKEGEGE 600
+EEEEEEE+EEEE++E ++E + E
Sbjct: 151 EEEEEEEEEEEEEEEEEEEEEEEDEEDDEE 240
Score = 34.7 bits (78), Expect = 0.046
Identities = 14/32 (43%), Positives = 21/32 (64%)
Frame = +1
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKEGEGESN 602
D+EEEEEE+EEEE++E +E + E +
Sbjct: 139 DDEEEEEEEEEEEEEEEEEEEEEEEEEDEEDD 234
Score = 33.9 bits (76), Expect = 0.078
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +1
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKEGEGESN 602
+EEEEEEE+EEEE++E + ++ E + +
Sbjct: 154 EEEEEEEEEEEEEEEEEEEEEEDEEDDEEDED 249
Score = 33.9 bits (76), Expect = 0.078
Identities = 14/32 (43%), Positives = 20/32 (61%)
Frame = +1
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKEGEGESN 602
+EEEEEEE+EEEE++E E + E +
Sbjct: 148 EEEEEEEEEEEEEEEEEEEEEEEEDEEDDEED 243
Score = 33.1 bits (74), Expect = 0.13
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +1
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKEGEGESN 602
+EEEEEEE+EEEE++E + + E + + +
Sbjct: 160 EEEEEEEEEEEEEEEEEEEEDEEDDEEDEDED 255
>TC12218
Length = 737
Score = 37.0 bits (84), Expect = 0.009
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Frame = +2
Query: 415 SKMIEIESSHFDGLSNAKKLEDKEKENEKLKSTMKLLEKSNKANEKKAA----------D 464
SK + ESS + +KL ++K NE+ +LE + KAA
Sbjct: 239 SKRLRTESSVSGSKACREKLR-RDKLNERFLELSSILEPGRQPKTDKAAIISDAVRVVTQ 415
Query: 465 LALELEKLKKTVEEGEALLKAKEEETQKMKEEANSLASEKQILNKTV 511
L E EKLK+ + + +K + E ++++E N L +K+ L K V
Sbjct: 416 LRNEAEKLKEMNNDLQEKIKELKAEKNEIRDEKNKLKLDKEKLEKKV 556
>TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly protein
1-like protein 3, partial (81%)
Length = 1298
Score = 36.6 bits (83), Expect = 0.012
Identities = 11/31 (35%), Positives = 29/31 (93%)
Frame = +2
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKEGEGES 601
DE+E+E++ ++EE++++++++ +++EGEG+S
Sbjct: 794 DEDEDEDDDDDEEEEDDDDDDEDDEEGEGKS 886
Score = 30.0 bits (66), Expect = 1.1
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKEG 597
D+EEEE++ +++ED E + +K G
Sbjct: 821 DDEEEEDDDDDDEDDEEGEGKSKSKSG 901
>TC15421 similar to GB|AAL36081.1|17380636|AY063731 AT3g49800/T16K5_150
{Arabidopsis thaliana;}, partial (44%)
Length = 856
Score = 36.2 bits (82), Expect = 0.016
Identities = 14/25 (56%), Positives = 22/25 (88%)
Frame = +2
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNK 595
+EEEEEEEQ+E++D+++NNN + K
Sbjct: 62 EEEEEEEEQDEQQDEQHNNNGADLK 136
Score = 35.4 bits (80), Expect = 0.027
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +2
Query: 557 YARIIEGKLITPNFDEEEEEEEQEEEEDKENNNNNN 592
+A+ I L DEEEEEEE+E++E ++ +NNN
Sbjct: 23 FAKTIANSL---RLDEEEEEEEEEQDEQQDEQHNNN 121
Score = 35.0 bits (79), Expect = 0.035
Identities = 13/31 (41%), Positives = 23/31 (73%)
Frame = +2
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKEGEGES 601
+EEEEEEE+++E+ E +NNN + + + +S
Sbjct: 59 EEEEEEEEEQDEQQDEQHNNNGADLKSQSDS 151
Score = 34.7 bits (78), Expect = 0.046
Identities = 12/31 (38%), Positives = 25/31 (79%)
Frame = +2
Query: 572 EEEEEEEQEEEEDKENNNNNNNNKEGEGESN 602
+EEEEEE+EE++++++ +NNN + + +S+
Sbjct: 56 DEEEEEEEEEQDEQQDEQHNNNGADLKSQSD 148
Score = 34.3 bits (77), Expect = 0.060
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +2
Query: 564 KLITPNFDEEEEEEEQEEEEDKENNNNNNNN 594
K I + +EEEEE+EEE+D++ + +NNN
Sbjct: 29 KTIANSLRLDEEEEEEEEEQDEQQDEQHNNN 121
>TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (SPBC3D6.14C
protein) (Fragment), partial (15%)
Length = 543
Score = 34.7 bits (78), Expect = 0.046
Identities = 11/39 (28%), Positives = 32/39 (81%)
Frame = +3
Query: 564 KLITPNFDEEEEEEEQEEEEDKENNNNNNNNKEGEGESN 602
K + + +EEE+++E+E++ED++++++++++ +GE E +
Sbjct: 231 KPVQTDNEEEEDDDEEEDDEDEDDDDDDDDDDDGEEEED 347
Score = 29.3 bits (64), Expect = 1.9
Identities = 8/32 (25%), Positives = 26/32 (81%)
Frame = +3
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKEGEGESN 602
++++EEE+ E+E+D ++++++++ +E E + +
Sbjct: 261 EDDDEEEDDEDEDDDDDDDDDDDGEEEEDDDD 356
Score = 29.3 bits (64), Expect = 1.9
Identities = 9/32 (28%), Positives = 26/32 (81%)
Frame = +3
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKEGEGESN 602
+E+++EEE +E+ED +++++++++ E E + +
Sbjct: 258 EEDDDEEEDDEDEDDDDDDDDDDDGEEEEDDD 353
>TC14994 similar to UP|O82469 (O82469) Protein phosphatase-2C , partial
(89%)
Length = 1672
Score = 33.9 bits (76), Expect = 0.078
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +2
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNK 595
+EEEEEEE+EEEE+ E N + N+
Sbjct: 188 EEEEEEEEEEEEEEAEKNGG*SRNR 262
Score = 32.0 bits (71), Expect = 0.30
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +2
Query: 571 DEEEEEEEQEEEEDKENNNNN 591
+EEEEEEE+EEEE++E N
Sbjct: 179 EEEEEEEEEEEEEEEEEAEKN 241
Score = 31.2 bits (69), Expect = 0.51
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKEG 597
+EEE EEE+EEEE++E K G
Sbjct: 164 EEEEVEEEEEEEEEEEEEEEEEAEKNG 244
Score = 30.0 bits (66), Expect = 1.1
Identities = 13/28 (46%), Positives = 16/28 (56%)
Frame = +2
Query: 572 EEEEEEEQEEEEDKENNNNNNNNKEGEG 599
EEEEE E+EEEE++E E G
Sbjct: 161 EEEEEVEEEEEEEEEEEEEEEEEAEKNG 244
Score = 29.3 bits (64), Expect = 1.9
Identities = 12/29 (41%), Positives = 18/29 (61%)
Frame = +2
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKEGEG 599
+EEEE EE+EEEE++E ++ G
Sbjct: 161 EEEEEVEEEEEEEEEEEEEEEEEAEKNGG 247
>TC19663 similar to UP|Q8H6S8 (Q8H6S8) Translation initiation factor,
partial (10%)
Length = 485
Score = 33.9 bits (76), Expect = 0.078
Identities = 27/83 (32%), Positives = 42/83 (50%)
Frame = +3
Query: 432 KKLEDKEKENEKLKSTMKLLEKSNKANEKKAADLALELEKLKKTVEEGEALLKAKEEETQ 491
KK E++EK ++ + + E +A E + E EKL K +EG+ LL K++E Q
Sbjct: 252 KKREEEEKLRKEEEERRRQEELERQAEEARRRKKEREKEKLLKKKQEGK-LLTGKQKEEQ 428
Query: 492 KMKEEANSLASEKQILNKTVDDL 514
+ E A +QIL+ V L
Sbjct: 429 RRLE-----AMRRQILSTGVATL 482
Score = 30.4 bits (67), Expect = 0.86
Identities = 36/155 (23%), Positives = 58/155 (37%)
Frame = +3
Query: 446 STMKLLEKSNKANEKKAADLALELEKLKKTVEEGEALLKAKEEETQKMKEEANSLASEKQ 505
+ K +K K EKKAA A +TVE K E + K E+ + A++K+
Sbjct: 30 AVQKKKKKKEKEKEKKAAAAAAGSAPANETVE-------VKAEVVESKKNESKTKAADKK 188
Query: 506 ILNKTVDDLTAETTSLKASILSQLEAGFNKAKEQILFLNPDVPIKTEGVDPYARIIEGKL 565
L ++ ++ + EA K +E+ E KL
Sbjct: 189 --------LPKHVREMQEALARRKEAEERKKREE----------------------EEKL 278
Query: 566 ITPNFDEEEEEEEQEEEEDKENNNNNNNNKEGEGE 600
+EEEE ++EE +++ KE E E
Sbjct: 279 -----RKEEEERRRQEELERQAEEARRRKKEREKE 368
>TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, partial
(31%)
Length = 727
Score = 33.9 bits (76), Expect = 0.078
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 572 EEEEEEEQEEEEDKENNNNNNNNKEGEGES 601
EEEEEEE+EEEE +E +E E E+
Sbjct: 232 EEEEEEEEEEEEGEEEEEEEEEEEEVEAEA 321
Score = 32.7 bits (73), Expect = 0.17
Identities = 15/41 (36%), Positives = 23/41 (55%)
Frame = +1
Query: 558 ARIIEGKLITPNFDEEEEEEEQEEEEDKENNNNNNNNKEGE 598
A + E + + +EE EEEE+EEEE++E +E E
Sbjct: 181 AEVQEYEEVEEEVEEEVEEEEEEEEEEEEGEEEEEEEEEEE 303
Score = 32.7 bits (73), Expect = 0.17
Identities = 14/30 (46%), Positives = 18/30 (59%)
Frame = +1
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKEGEGE 600
+EEEEEEE+EE E++E E E E
Sbjct: 235 EEEEEEEEEEEGEEEEEEEEEEEEVEAEAE 324
Score = 31.6 bits (70), Expect = 0.39
Identities = 14/32 (43%), Positives = 19/32 (58%)
Frame = +1
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKEGEGESN 602
+EEEEEEE+ EEE++E E E E +
Sbjct: 241 EEEEEEEEEGEEEEEEEEEEEEVEAEAEEEDD 336
Score = 31.6 bits (70), Expect = 0.39
Identities = 14/29 (48%), Positives = 18/29 (61%)
Frame = +1
Query: 572 EEEEEEEQEEEEDKENNNNNNNNKEGEGE 600
EEE EEE+EEEE++E +E E E
Sbjct: 220 EEEVEEEEEEEEEEEEGEEEEEEEEEEEE 306
Score = 30.0 bits (66), Expect = 1.1
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 572 EEEEEEEQEEEEDKENNNNNNNNKEGEGE 600
EEE EEE EEEE++E +E E E
Sbjct: 208 EEEVEEEVEEEEEEEEEEEEGEEEEEEEE 294
Score = 29.6 bits (65), Expect = 1.5
Identities = 13/31 (41%), Positives = 19/31 (60%)
Frame = +1
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKEGEGES 601
+E EEEEE+EEEE++ +E E E+
Sbjct: 223 EEVEEEEEEEEEEEEGEEEEEEEEEEEEVEA 315
Score = 29.6 bits (65), Expect = 1.5
Identities = 13/30 (43%), Positives = 18/30 (59%)
Frame = +1
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKEGEGE 600
+E EEE E+EEEE++E +E E E
Sbjct: 211 EEVEEEVEEEEEEEEEEEEGEEEEEEEEEE 300
Score = 29.6 bits (65), Expect = 1.5
Identities = 13/30 (43%), Positives = 18/30 (59%)
Frame = +1
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKEGEGE 600
+EE EEE +EEEE++E +E E E
Sbjct: 208 EEEVEEEVEEEEEEEEEEEEGEEEEEEEEE 297
Score = 28.9 bits (63), Expect = 2.5
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKEGEGE 600
+EEEEE E+EEEE++E +E + E
Sbjct: 250 EEEEEEGEEEEEEEEEEEEVEAEAEEEDDE 339
Score = 28.5 bits (62), Expect = 3.3
Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Frame = +1
Query: 428 LSNAKKLEDKEKENEKLKSTMKLLEKSNKANE------KKAADLALELEKLKKTVEEGEA 481
L++ ++ ++ NE + KL+ KS+++ E K E E++++ VEE
Sbjct: 55 LASLQESPNEAMVNESITKKRKLVPKSSQSAELPFKLQNKLEAEVQEYEEVEEEVEEEVE 234
Query: 482 LLKAKEEETQKMKEEANSLASEKQI 506
+ +EEE ++ +EE E+++
Sbjct: 235 EEEEEEEEEEEGEEEEEEEEEEEEV 309
Score = 28.1 bits (61), Expect = 4.3
Identities = 26/88 (29%), Positives = 39/88 (43%), Gaps = 3/88 (3%)
Frame = +1
Query: 516 AETTSLKASILSQLEAGFNKA--KEQILFLNPDVPIKTEGVD-PYARIIEGKLITPNFDE 572
+E S L+ L+ N+A E I VP ++ + P+ ++ KL E
Sbjct: 25 SENPSFNPHSLASLQESPNEAMVNESITKKRKLVPKSSQSAELPFK--LQNKL-EAEVQE 195
Query: 573 EEEEEEQEEEEDKENNNNNNNNKEGEGE 600
EE EE+ EEE +E +EGE E
Sbjct: 196 YEEVEEEVEEEVEEEEEEEEEEEEGEEE 279
>TC8203 similar to UP|Q8L9C3 (Q8L9C3) Copia-like retroelement pol
polyprotein, partial (96%)
Length = 1198
Score = 33.1 bits (74), Expect = 0.13
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 15/160 (9%)
Frame = +2
Query: 442 EKLKSTMKLLEKSNKANEKKAADLALELEKLK-----KTVEEGEALLKAKEEETQKMKEE 496
+KL T+++LEK K KKA + E+EK K K LK K Q++++
Sbjct: 281 DKLNETLEMLEKKEKVLLKKA---SAEVEKAKEFTRAKNKRAAIQCLKRKRLYEQQIEQL 451
Query: 497 AN-SLASEKQIL--------NKTVDDLTAETTSLKASILSQLEAGFNKAKEQILFLNPDV 547
N L Q++ +TVD L +++KA + +K ++I
Sbjct: 452 GNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMQKATNIDDVDKTMDEI------- 610
Query: 548 PIKTEGVDPYARIIEGKL-ITPNFDEEEEEEEQEEEEDKE 586
+TE + + + +FDE+E E E EE E E
Sbjct: 611 NEQTENMKQIQEALSAPIGAAADFDEDELEAELEELEGAE 730
>AV424050
Length = 274
Score = 32.7 bits (73), Expect = 0.17
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = -2
Query: 573 EEEEEEQEEEEDKENNNNNNN 593
EEEEEE+EEEE+ E+ N+ N
Sbjct: 81 EEEEEEEEEEEESESQNDKRN 19
Score = 32.3 bits (72), Expect = 0.23
Identities = 14/27 (51%), Positives = 18/27 (65%)
Frame = -2
Query: 572 EEEEEEEQEEEEDKENNNNNNNNKEGE 598
EEEEEEE+EEEE + N+ N E +
Sbjct: 81 EEEEEEEEEEEESESQNDKRNPIPESQ 1
Score = 32.0 bits (71), Expect = 0.30
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = -2
Query: 571 DEEEEEEEQEEEEDKENNNNN 591
+EEEEEEE+EEE + +N+ N
Sbjct: 81 EEEEEEEEEEEESESQNDKRN 19
Score = 29.6 bits (65), Expect = 1.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 574 EEEEEQEEEEDKENNNNNNNNKEGEGE 600
EEEEE+EEEE++ + N+ N E +
Sbjct: 81 EEEEEEEEEEEESESQNDKRNPIPESQ 1
Score = 26.9 bits (58), Expect = 9.5
Identities = 11/26 (42%), Positives = 18/26 (68%)
Frame = -2
Query: 576 EEEQEEEEDKENNNNNNNNKEGEGES 601
EEE+EEEE++E + + N+ + ES
Sbjct: 81 EEEEEEEEEEEESESQNDKRNPIPES 4
>AV416122
Length = 414
Score = 32.7 bits (73), Expect = 0.17
Identities = 12/30 (40%), Positives = 23/30 (76%)
Frame = +3
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKEGEGE 600
DEE++EEE EEE+D+++++N + +G+
Sbjct: 318 DEEDKEEEDEEEDDEDDDSNGEAEVDRKGK 407
Score = 32.0 bits (71), Expect = 0.30
Identities = 12/38 (31%), Positives = 27/38 (70%)
Frame = +3
Query: 562 EGKLITPNFDEEEEEEEQEEEEDKENNNNNNNNKEGEG 599
EG+ + +++EEE+E+E++ED ++N +++G+G
Sbjct: 297 EGEEEEDDEEDKEEEDEEEDDEDDDSNGEAEVDRKGKG 410
>TC10506 similar to UP|Q9X5B4 (Q9X5B4) Lactoferrin-binding protein, partial
(3%)
Length = 521
Score = 32.3 bits (72), Expect = 0.23
Identities = 15/32 (46%), Positives = 19/32 (58%)
Frame = -2
Query: 568 PNFDEEEEEEEQEEEEDKENNNNNNNNKEGEG 599
P+FD EEEEE +EE ED +NN +G
Sbjct: 493 PSFDPEEEEEAEEENEDVNVIDNNEFPTPNQG 398
>TC9459 similar to AAQ23982 (AAQ23982) Transcription factor Rap212, partial
(12%)
Length = 434
Score = 31.6 bits (70), Expect = 0.39
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 582 EEDKENNNNNNNNKEGEGESN 602
EE+ NNNNNNNN SN
Sbjct: 251 EEESNNNNNNNNNSNSNSNSN 313
Score = 27.3 bits (59), Expect = 7.3
Identities = 10/21 (47%), Positives = 12/21 (56%)
Frame = +2
Query: 581 EEEDKENNNNNNNNKEGEGES 601
EEE NNNNNNN+ +
Sbjct: 251 EEESNNNNNNNNNSNSNSNSN 313
Score = 27.3 bits (59), Expect = 7.3
Identities = 10/15 (66%), Positives = 12/15 (79%)
Frame = +2
Query: 580 EEEEDKENNNNNNNN 594
EEE + NNNNNN+N
Sbjct: 251 EEESNNNNNNNNNSN 295
>TC15611 homologue to UP|Q40209 (Q40209) RAB5A, partial (56%)
Length = 463
Score = 31.2 bits (69), Expect = 0.51
Identities = 13/14 (92%), Positives = 14/14 (99%)
Frame = -2
Query: 571 DEEEEEEEQEEEED 584
DEEEEEEE+EEEED
Sbjct: 48 DEEEEEEEEEEEED 7
Score = 28.5 bits (62), Expect = 3.3
Identities = 11/14 (78%), Positives = 14/14 (99%)
Frame = -2
Query: 571 DEEEEEEEQEEEED 584
+EEEEEEE+EEE+D
Sbjct: 45 EEEEEEEEEEEEDD 4
>TC9118 similar to UP|Q84JE4 (Q84JE4) Squamosa promoter binding
like-protein, partial (16%)
Length = 779
Score = 31.2 bits (69), Expect = 0.51
Identities = 12/26 (46%), Positives = 21/26 (80%)
Frame = +2
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKE 596
+EEEEEEE+EEEE +E+ ++ +++
Sbjct: 17 EEEEEEEEEEEEEKREDVRDHKRSRK 94
Score = 30.0 bits (66), Expect = 1.1
Identities = 13/31 (41%), Positives = 20/31 (63%)
Frame = +2
Query: 572 EEEEEEEQEEEEDKENNNNNNNNKEGEGESN 602
EEEEEEE+EEEE+K + ++ + S+
Sbjct: 17 EEEEEEEEEEEEEKREDVRDHKRSRKKHRSH 109
Score = 28.5 bits (62), Expect = 3.3
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +2
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKE 596
+EEEEEEE+EEE+ ++ ++ + K+
Sbjct: 20 EEEEEEEEEEEEKREDVRDHKRSRKK 97
Score = 27.3 bits (59), Expect = 7.3
Identities = 11/32 (34%), Positives = 18/32 (55%)
Frame = +2
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKEGEGESN 602
+EEEEEEE+E+ ED ++ + S+
Sbjct: 26 EEEEEEEEEEKREDVRDHKRSRKKHRSHRSSH 121
Score = 26.9 bits (58), Expect = 9.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 571 DEEEEEEEQEEEEDKENNNNNNNNKEGEGESN 602
+EEEEEEE+EE+ + ++ + K S+
Sbjct: 23 EEEEEEEEEEEKREDVRDHKRSRKKHRSHRSS 118
>BP038960
Length = 524
Score = 31.2 bits (69), Expect = 0.51
Identities = 12/27 (44%), Positives = 21/27 (77%)
Frame = +3
Query: 559 RIIEGKLITPNFDEEEEEEEQEEEEDK 585
R+ + + ++D++EEEEE+EEEED+
Sbjct: 297 RVEDSEEEAADYDDDEEEEEEEEEEDE 377
Score = 28.5 bits (62), Expect = 3.3
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 550 KTEGVDPYARIIEGKLITPNFDEEEEEEEQEEEE 583
K E P E + + DEEEEEEE+EE+E
Sbjct: 276 KGEAEQPRVEDSEEEAADYDDDEEEEEEEEEEDE 377
>AV410716
Length = 424
Score = 31.2 bits (69), Expect = 0.51
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +2
Query: 573 EEEEEEQEEEEDKENNNNNNNNK 595
EEEEEE+EEEE+ E N + N+
Sbjct: 173 EEEEEEEEEEEEAEKNGG*SRNR 241
Score = 30.4 bits (67), Expect = 0.86
Identities = 14/27 (51%), Positives = 18/27 (65%)
Frame = +2
Query: 572 EEEEEEEQEEEEDKENNNNNNNNKEGE 598
EEEEEEE+EEEE ++N + N E
Sbjct: 173 EEEEEEEEEEEEAEKNGG*SRNRVSTE 253
Score = 29.3 bits (64), Expect = 1.9
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 571 DEEEEEEEQEEEEDKENNNNNN 592
+EEEE EE+EEEE++E N
Sbjct: 155 EEEEEVEEEEEEEEEEEEAEKN 220
Score = 28.9 bits (63), Expect = 2.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 571 DEEEEEEEQEEEEDKENNNNNN 592
+EEEEEEE+EEE +K + N
Sbjct: 173 EEEEEEEEEEEEAEKNGG*SRN 238
Score = 28.5 bits (62), Expect = 3.3
Identities = 12/22 (54%), Positives = 15/22 (67%)
Frame = +2
Query: 572 EEEEEEEQEEEEDKENNNNNNN 593
EEEEE E+EEEE++E N
Sbjct: 155 EEEEEVEEEEEEEEEEEEAEKN 220
>TC11270 similar to UP|Q9LM88 (Q9LM88) F2D10.15, partial (9%)
Length = 735
Score = 31.2 bits (69), Expect = 0.51
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +3
Query: 572 EEEEEEEQEEEEDKENNNNNNNNKEGEG 599
EEEEEEE+ ED++ N + + ++E EG
Sbjct: 450 EEEEEEEEVVVEDEQGNEDEDEDEEEEG 533
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.312 0.130 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,715,593
Number of Sequences: 28460
Number of extensions: 142903
Number of successful extensions: 2163
Number of sequences better than 10.0: 119
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1630
length of query: 602
length of database: 4,897,600
effective HSP length: 95
effective length of query: 507
effective length of database: 2,193,900
effective search space: 1112307300
effective search space used: 1112307300
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0331a.1