BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0327.6
(442 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW720191 33 0.12
TC10403 similar to UP|O80815 (O80815) T8F5.22 protein, partial (... 32 0.27
BP067133 30 0.61
TC15481 similar to UP|Q9LUR1 (Q9LUR1) RING zinc finger protein-l... 30 0.61
BP036228 30 0.61
TC11782 similar to UP|Q9LUV6 (Q9LUV6) Genomic DNA, chromosome 3,... 30 0.80
AV780130 30 0.80
AU251563 30 0.80
TC9435 similar to UP|Q9AXJ7 (Q9AXJ7) Phosphatase-like protein Mt... 30 1.0
TC10364 similar to UP|Q9ARE3 (Q9ARE3) ZF-HD homeobox protein, pa... 30 1.0
TC14616 29 1.4
TC9381 similar to UP|PALY_STYHU (P45732) Phenylalanine ammonia-l... 29 1.8
BP064047 29 1.8
TC12082 weakly similar to UP|Q40385 (Q40385) Pistil extensin-lik... 28 2.3
AV408145 28 3.0
TC15253 weakly similar to UP|Q9ZT16 (Q9ZT16) Arabinogalactan-pro... 28 3.0
AV409746 28 3.0
BP036801 28 3.0
TC15164 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, p... 28 3.9
TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly pr... 28 3.9
>AW720191
Length = 508
Score = 32.7 bits (73), Expect = 0.12
Identities = 24/87 (27%), Positives = 33/87 (37%)
Frame = +1
Query: 61 RLPPIQHPKASLGIREMQPFSR*PKPLPSSAPPTPPGNHIPLTHRAR*HLPKIPAPETEA 120
R PP HP ++L R KP P +APP+ A H P P+P ++
Sbjct: 265 RRPPSLHPSSNLS-------RRCEKPPPPNAPPSSSAKSSSAAPSATSHTPSNPSPRRKS 423
Query: 121 GTHIMDHGLTHTGISLQFLQPRLHRAP 147
T + L P HR+P
Sbjct: 424 NAKHSTSSSTRSN-----LTPPPHRSP 489
>TC10403 similar to UP|O80815 (O80815) T8F5.22 protein, partial (15%)
Length = 1392
Score = 31.6 bits (70), Expect = 0.27
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -3
Query: 63 PPIQHPKASLGIREMQPFSR*PKPLPSSAPPTPPGN 98
PP+ P+ L P P+PLP S PP PPGN
Sbjct: 1096 PPLPCPQPPLSPVLAPP----PQPLPPSLPPQPPGN 1001
>BP067133
Length = 507
Score = 30.4 bits (67), Expect = 0.61
Identities = 23/66 (34%), Positives = 30/66 (44%), Gaps = 10/66 (15%)
Frame = +2
Query: 61 RLPPIQHPKASLGIREMQPFSR*PKP--LPSSAPP----TPPGNHIPL----THRAR*HL 110
+LPP+QH L R P P+P LP PP PP + +PL R HL
Sbjct: 227 KLPPLQHRLQPLHRRPHPPLPPPPRPPLLPPPRPPQRLLPPPLHLLPLHLRPLRRQGLHL 406
Query: 111 PKIPAP 116
+ P+P
Sbjct: 407 HRYPSP 424
>TC15481 similar to UP|Q9LUR1 (Q9LUR1) RING zinc finger protein-like,
partial (32%)
Length = 706
Score = 30.4 bits (67), Expect = 0.61
Identities = 29/102 (28%), Positives = 39/102 (37%), Gaps = 4/102 (3%)
Frame = +3
Query: 55 IHRVLARLPPIQHPKASLGIREMQPFSR*PKPLPSSAPPTPPGNHIPLTHR----AR*HL 110
+HR L LPP +R + P R P P P PP+ P +P H+ + HL
Sbjct: 141 LHRRLNGLPP--------HLRPLVPPPRSPPPPPQPPPPSSPARVLP*PHQPHHSSTRHL 296
Query: 111 PKIPAPETEAGTHIMDHGLTHTGISLQFLQPRLHRAPLLALR 152
P+ H+ + H R H AP L LR
Sbjct: 297 PR----------HLRRRRILHRRRPTWPGSFRHHLAPCLLLR 392
>BP036228
Length = 626
Score = 30.4 bits (67), Expect = 0.61
Identities = 30/104 (28%), Positives = 40/104 (37%), Gaps = 15/104 (14%)
Frame = +3
Query: 62 LPPIQHPKASLGIREMQPFSR*P----KPLPSSAPPTPPGNHIP--LTHR---------A 106
LPP+ +L P S P P P S+PP+ P +P LT+R A
Sbjct: 174 LPPLLSTGTALTAPPPSPISMLPLLLPPPAPISSPPSAPSTPMPPSLTNRRPRRNRNSSA 353
Query: 107 R*HLPKIPAPETEAGTHIMDHGLTHTGISLQFLQPRLHRAPLLA 150
H K P P E+ T + + S Q RL A + A
Sbjct: 354 ARHQVKNPPPPVESSTSSTAASIAPSACSYQIDPSRLLAATISA 485
>TC11782 similar to UP|Q9LUV6 (Q9LUV6) Genomic DNA, chromosome 3, P1 clone:
MCB17, partial (12%)
Length = 468
Score = 30.0 bits (66), Expect = 0.80
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +2
Query: 84 PKPLPSSAPPTPPGNHIPLTHRAR*HLPKIPAPETEAG 121
PKP P++ P P N P H P IP P E G
Sbjct: 230 PKPKPNNTTPNPKPNPNPSPKHPTDHPPLIPFPFPERG 343
>AV780130
Length = 518
Score = 30.0 bits (66), Expect = 0.80
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 9/30 (30%)
Frame = +2
Query: 342 LEVGAWK---------PTGQTGDDPVHGMR 362
L+VG WK P +TGDDP HGM+
Sbjct: 380 LQVGDWKCRQAKGPKIPVPKTGDDPTHGMQ 469
>AU251563
Length = 350
Score = 30.0 bits (66), Expect = 0.80
Identities = 22/54 (40%), Positives = 24/54 (43%)
Frame = +3
Query: 63 PPIQHPKASLGIREMQPFSR*PKPLPSSAPPTPPGNHIPLTHRAR*HLPKIPAP 116
PP Q AS +R + P PLP S PPTP P T R LP P P
Sbjct: 78 PPHQSTSASSSLRT----TCLPSPLPPS-PPTPATAPSPPTTTLRASLPAAPTP 224
>TC9435 similar to UP|Q9AXJ7 (Q9AXJ7) Phosphatase-like protein Mtc923,
partial (17%)
Length = 486
Score = 29.6 bits (65), Expect = 1.0
Identities = 21/54 (38%), Positives = 25/54 (45%)
Frame = +3
Query: 63 PPIQHPKASLGIREMQPFSR*PKPLPSSAPPTPPGNHIPLTHRAR*HLPKIPAP 116
PP +P S R P +R P P P APPT P H AR P++P P
Sbjct: 240 PPSLNPLTSTLPR--LPHARLPLPTPPLAPPTSSD---PAGHSARNLPPRLPEP 386
>TC10364 similar to UP|Q9ARE3 (Q9ARE3) ZF-HD homeobox protein, partial (14%)
Length = 1117
Score = 29.6 bits (65), Expect = 1.0
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +1
Query: 384 EYGEEVGWRLSKEMEGSVLKW 404
E+ E++GWR+ +E EGS+ K+
Sbjct: 499 EFSEKLGWRMQREEEGSIPKF 561
>TC14616
Length = 1353
Score = 29.3 bits (64), Expect = 1.4
Identities = 15/43 (34%), Positives = 20/43 (45%), Gaps = 1/43 (2%)
Frame = -2
Query: 157 QRSWVTLLPIPA-RSHSRDGVVEDPQNVLPHRRSRHRALFHAH 198
Q V + P+P R H+R V+ P +P RR R H H
Sbjct: 515 QNPTVNIKPLPQPRRHNRQRRVQIPLRTVPQRREEQRRTTHRH 387
>TC9381 similar to UP|PALY_STYHU (P45732) Phenylalanine ammonia-lyase ,
partial (30%)
Length = 997
Score = 28.9 bits (63), Expect = 1.8
Identities = 20/60 (33%), Positives = 23/60 (38%)
Frame = -3
Query: 67 HPKASLGIREMQPFSR*PKPLPSSAPPTPPGNHIPLTHRAR*HLPKIPAPETEAGTHIMD 126
H SL P S *P P PS+ P PP H H P PE + +H D
Sbjct: 485 HSYQSLYSYYPSPSSY*PPPQPSTTPRAPPSQHPG-------HEPPQQPPERSSKSHHRD 327
>BP064047
Length = 296
Score = 28.9 bits (63), Expect = 1.8
Identities = 13/28 (46%), Positives = 16/28 (56%), Gaps = 2/28 (7%)
Frame = -3
Query: 88 PSSAPPTP--PGNHIPLTHRAR*HLPKI 113
P + PP+P PG+H P HLPKI
Sbjct: 285 PKNLPPSPQIPGSHAPYKFSQETHLPKI 202
>TC12082 weakly similar to UP|Q40385 (Q40385) Pistil extensin-like
protein, partial (11%)
Length = 308
Score = 28.5 bits (62), Expect = 2.3
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 55 IHRVLARLPPIQHPKASLGIRE-MQPFSR*PKPLPSSAPPTPP 96
+H LPP A+L IR P+ P P P+ PP+PP
Sbjct: 46 LHLGFTFLPPPPWILANLRIRSPTSPWDPLPTPTPTPTPPSPP 174
>AV408145
Length = 422
Score = 28.1 bits (61), Expect = 3.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 177 VEDPQNVLPHRRSRHRALFHAHHQL 201
++ PQ+ PH RHR + H+HH L
Sbjct: 154 LQKPQH--PHNLRRHRGMAHSHHHL 222
>TC15253 weakly similar to UP|Q9ZT16 (Q9ZT16) Arabinogalactan-protein
(ATAGP4) (AT5G10430/F12B17_220), partial (42%)
Length = 575
Score = 28.1 bits (61), Expect = 3.0
Identities = 36/118 (30%), Positives = 50/118 (41%), Gaps = 8/118 (6%)
Frame = +1
Query: 56 HRVLARLPPIQHPKASLGIREMQPFSR*PKPLPSSAPPTPPGNHIPL--------THRAR 107
H+ L LPP+ H ++ P P PL P PP H PL +H A+
Sbjct: 238 HQQLPLLPPLLH--------QLPPLLP-PPPLQLPLQPLPPPVHPPLPLPLHPPQSHPAQ 390
Query: 108 *HLPKIPAPETEAGTHIMDHGLTHTGISLQFLQPRLHRAPLLALRL*RAQRSWVTLLP 165
H + P P +A T ++ H L + P L APLL L + SW+ +LP
Sbjct: 391 -HQAQAP-PLDQAQTALIHHHL--PPLHSHSTSPSL-LAPLLLLP--SSPWSWLRILP 543
>AV409746
Length = 411
Score = 28.1 bits (61), Expect = 3.0
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +3
Query: 86 PLPSSAPPTPPGNHIPLTHRAR*HLPKIPAPET 118
P PS+ PP PP T A *H P +T
Sbjct: 279 PTPSTPPPVPPAPSSRTTSAAS*HTPSTAPAQT 377
>BP036801
Length = 540
Score = 28.1 bits (61), Expect = 3.0
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Frame = +3
Query: 58 VLARLP-PIQHPKASLGIREMQPFSR*PKPLPSSAP----PTPPGNHIPLTHRAR*HLPK 112
VL R P P +HP + ++ P + PLP++ P TPP +H+P R + + P+
Sbjct: 336 VLLRRPHPRRHPPPNRRLQRRLPQAPHLHPLPTTQPLRLARTPPESHLPSLVRLQPNPPR 515
>TC15164 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, partial
(57%)
Length = 1185
Score = 27.7 bits (60), Expect = 3.9
Identities = 22/73 (30%), Positives = 30/73 (40%), Gaps = 24/73 (32%)
Frame = +3
Query: 57 RVLARLPPIQHP-----KASLGIREMQ--------------PFSR*PKPLPSS-----AP 92
R ARLPP P +AS +R +Q P + P+P P + P
Sbjct: 189 RQQARLPPPSRPSLRGLRASPRLRHLQG*RRFPLRLL*PRHPLRQPPRPPPRTRPHRAVP 368
Query: 93 PTPPGNHIPLTHR 105
P P +H+PL R
Sbjct: 369 PPQPQHHLPLRRR 407
Score = 26.6 bits (57), Expect = 8.8
Identities = 15/54 (27%), Positives = 22/54 (39%)
Frame = +2
Query: 63 PPIQHPKASLGIREMQPFSR*PKPLPSSAPPTPPGNHIPLTHRAR*HLPKIPAP 116
PP P A+L + S+ P P P+ P P + + T P P+P
Sbjct: 188 PPTSSPPATLASLSARSASKPPPPSPARLTPLPSASPVTTT-----STPPTPSP 334
>TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly protein
1-like protein 3, partial (81%)
Length = 1298
Score = 27.7 bits (60), Expect = 3.9
Identities = 10/21 (47%), Positives = 11/21 (51%)
Frame = -1
Query: 185 PHRRSRHRALFHAHHQLEAHV 205
PH R RH H HH L H+
Sbjct: 860 PHHRHRHPLPLHHHHHLHLHL 798
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.325 0.141 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,312,902
Number of Sequences: 28460
Number of extensions: 144424
Number of successful extensions: 1719
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 1527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1656
length of query: 442
length of database: 4,897,600
effective HSP length: 93
effective length of query: 349
effective length of database: 2,250,820
effective search space: 785536180
effective search space used: 785536180
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0327.6