TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0327.1
         (91 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC7796 homologue to gb|AF036495.1|AF036495 Hamamelis virginiana ...    28  0.21
TC9030 similar to GB|AAM63479.1|21554372|AY086477 phospholipase-...    26  1.4
AV773627                                                               25  2.3
AV423046                                                               25  3.1
TC18569 weakly similar to UP|Q9LWT2 (Q9LWT2) ESTs AU082419(E6174...    24  4.0
TC8098 similar to UP|Q94FT5 (Q94FT5) Pectate lyase (Fragment), p...    23  6.8
TC8307 weakly similar to UP|Q9SP47 (Q9SP47) Homeodomain-leucine ...    23  6.8
BP047947                                                               23  6.8
TC15445 similar to UP|Q8S937 (Q8S937) BLE1 protein, partial (80%)      23  8.9

>TC7796 homologue to gb|AF036495.1|AF036495 Hamamelis virginiana large
           subunit 26S ribosomal RNA gene, partial sequence,
           complete
          Length = 6006

 Score = 28.5 bits (62), Expect = 0.21
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 33  GGSTNPVILRESCWRESTFQALSAKGTPFDP 63
           GG+T P+  R +   E T Q +  +G P DP
Sbjct: 905 GGTTRPIKARSASPAEGTSQPVHTRGGPIDP 813


>TC9030 similar to GB|AAM63479.1|21554372|AY086477 phospholipase-like
           protein {Arabidopsis thaliana;}, partial (53%)
          Length = 596

 Score = 25.8 bits (55), Expect = 1.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 3   *ILLVDLVLMQLRVDGVLIRLRDTRMHCVFGGSTN 37
           *++ V+LV  ++    VL+RLRD   HC +    N
Sbjct: 134 *VVSVELVRSEVAEGVVLVRLRDWVHHCCYPAPKN 30


>AV773627 
          Length = 465

 Score = 25.0 bits (53), Expect = 2.3
 Identities = 12/32 (37%), Positives = 19/32 (58%)
 Frame = +2

Query: 35 STNPVILRESCWRESTFQALSAKGTPFDPAVY 66
          +TNPV+L      +S F ALS++ T F   ++
Sbjct: 17 TTNPVVLSSILHLQSLFSALSSQKTWFHVVLF 112


>AV423046 
          Length = 427

 Score = 24.6 bits (52), Expect = 3.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 9   LVLMQLRVDGVLIRLRDTRMHCVFGGS 35
           L+  Q  + G+  RLR T++ C+FG S
Sbjct: 415 LLCYQHLLSGLCSRLRRTQVFCLFGSS 335


>TC18569 weakly similar to UP|Q9LWT2 (Q9LWT2) ESTs AU082419(E61744), partial
           (95%)
          Length = 538

 Score = 24.3 bits (51), Expect = 4.0
 Identities = 17/55 (30%), Positives = 26/55 (46%)
 Frame = +1

Query: 31  VFGGSTNPVILRESCWRESTFQALSAKGTPFDPAVYNDPSIISQRLPIVKQMTQN 85
           +FGG+T   I     W E+  +  S   T   P V N    IS++  IVK  +++
Sbjct: 157 IFGGTTPGTITNTGWWEETDKKFQSWPRTAGPPVVMNP---ISRQNFIVKSRSES 312


>TC8098 similar to UP|Q94FT5 (Q94FT5) Pectate lyase (Fragment), partial
           (56%)
          Length = 1349

 Score = 23.5 bits (49), Expect = 6.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 32  FGGSTNPVILRESCWRESTFQALSAK 57
           F  +T+P  +R SCW   T    ++K
Sbjct: 124 FPTTTSPTTMRRSCWATVTLTLETSK 201


>TC8307 weakly similar to UP|Q9SP47 (Q9SP47) Homeodomain-leucine zipper
           protein 57, partial (51%)
          Length = 1629

 Score = 23.5 bits (49), Expect = 6.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 33  GGSTNPVILRESCWRESTFQALSAK 57
           GGSTNP +   +C++ S     S +
Sbjct: 989 GGSTNPFVSLSTCFKFSLASTFSVR 915


>BP047947 
          Length = 541

 Score = 23.5 bits (49), Expect = 6.8
 Identities = 13/41 (31%), Positives = 19/41 (45%)
 Frame = +3

Query: 5   LLVDLVLMQLRVDGVLIRLRDTRMHCVFGGSTNPVILRESC 45
           +L  L L+ L    +LIR     +   F  + NPVI+   C
Sbjct: 153 ILSSLHLLNLSKSVLLIRATAAALRSYFPFAINPVIMPSQC 275


>TC15445 similar to UP|Q8S937 (Q8S937) BLE1 protein, partial (80%)
          Length = 580

 Score = 23.1 bits (48), Expect = 8.9
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 46 WRESTFQALSAKGTPFDPAVYNDPS 70
          W E T +A   + +PF P     PS
Sbjct: 60 WEEDTAEARRTRASPFTPLNAGTPS 134


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.331    0.144    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,395,829
Number of Sequences: 28460
Number of extensions: 14707
Number of successful extensions: 111
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of query: 91
length of database: 4,897,600
effective HSP length: 67
effective length of query: 24
effective length of database: 2,990,780
effective search space: 71778720
effective search space used: 71778720
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 48 (23.1 bits)