BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0323a.14
(219 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC9212 similar to UP|TLPH_ARATH (P50699) Thaumatin-like protein ... 60 2e-10
TC8428 similar to UP|Q9SNY0 (Q9SNY0) SCUTL2, partial (87%) 59 5e-10
TC20023 similar to GB|AAP13435.1|30023804|BT006327 At1g20030 {Ar... 53 4e-08
BP046128 45 1e-05
TC14162 similar to UP|OLP1_LYCES (Q41350) Osmotin-like protein p... 40 2e-04
TC16995 similar to PIR|T05493|T05493 pathogenesis-related protei... 38 0.001
TC7964 homologue to UP|O81926 (O81926) Thaumatin-like protein PR... 35 0.010
TC7965 homologue to UP|O81926 (O81926) Thaumatin-like protein PR... 31 0.15
TC15261 weakly similar to UP|Q9ZQ55 (Q9ZQ55) At2g22570 protein, ... 27 2.7
TC14500 UP|Q9S7B1 (Q9S7B1) Nodule INCEPTION protein, complete 27 2.7
BP056260 27 3.6
TC15735 similar to UP|Q9SI52 (Q9SI52) Expressed protein (At2g038... 26 6.1
BP071489 26 6.1
TC14231 25 8.0
>TC9212 similar to UP|TLPH_ARATH (P50699) Thaumatin-like protein precursor,
partial (51%)
Length = 662
Score = 60.5 bits (145), Expect = 2e-10
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 2/111 (1%)
Frame = +1
Query: 111 GYNFNLPVTIYSVDLKCKEIQCLVDMMSFCPD*LAIYDSGGLKV-GCKNACYTVGDQKLC 169
GYN + +T KC C+ D+ CP L + +V CK+AC + C
Sbjct: 28 GYNLPISITPLKGSGKCSYAGCVRDLNIMCPVGLQVRSRDNKRVVACKSACAAFNSPRYC 207
Query: 170 CSAVYAFPKKCELNDYRQLVDDNCPYFISNAFNQ-THFTCYGTASYVISFC 219
C+ Y P+ C+ Y ++ CP S A++ T + ASY+I+FC
Sbjct: 208 CTGSYGSPQSCKPTAYSRIFKTACPKAYSYAYDDPTSISTCTHASYLITFC 360
>TC8428 similar to UP|Q9SNY0 (Q9SNY0) SCUTL2, partial (87%)
Length = 1131
Score = 59.3 bits (142), Expect = 5e-10
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 3/112 (2%)
Frame = +1
Query: 111 GYNFNLPVTIYSVDLKCKEIQCLVDMMSFCPD*LAIY--DSGGLKVGCKNACYTVGDQKL 168
GYN + V C+ C+ D+ CP L + +S G V CK+AC +
Sbjct: 460 GYNVGMGVRATGGTGDCQYAGCVADLNGSCPAELQVKGENSTGEVVACKSACAAFNTTEF 639
Query: 169 CCSAVYAFPKKCELNDYRQLVDDNCPYFISNAFNQTHFTCYGTAS-YVISFC 219
CC+ +A P C Y ++ CP S A++ TC + S Y I+FC
Sbjct: 640 CCTGEHATPATCSPTHYSEIFKSACPTAYSYAYDDATSTCTCSGSDYSITFC 795
>TC20023 similar to GB|AAP13435.1|30023804|BT006327 At1g20030 {Arabidopsis
thaliana;}, partial (46%)
Length = 418
Score = 53.1 bits (126), Expect = 4e-08
Identities = 26/82 (31%), Positives = 37/82 (44%), Gaps = 1/82 (1%)
Frame = +3
Query: 127 CKEIQCLVDMMSFCPD*LAIYDSGGLK-VGCKNACYTVGDQKLCCSAVYAFPKKCELNDY 185
C C+ D+ CP L + G + V CK+AC G + CCS Y P C+ + Y
Sbjct: 171 CTATGCVGDLNGACPSELRVTSVDGKRNVACKSACEAFGSPQYCCSGAYGSPNTCKPSTY 350
Query: 186 RQLVDDNCPYFISNAFNQTHFT 207
Q+ CP S A++ T
Sbjct: 351 SQVFKSACPRAYSYAYDDKSST 416
>BP046128
Length = 514
Score = 45.1 bits (105), Expect = 1e-05
Identities = 21/68 (30%), Positives = 33/68 (47%), Gaps = 2/68 (2%)
Frame = -1
Query: 154 VGCKNACYTVGDQKLCCSAVYAFPKKCELNDYRQLVDDNCP--YFISNAFNQTHFTCYGT 211
VGC +AC + K CC+ + P+ C+ ++Y CP Y + + F+C
Sbjct: 511 VGCNSACVAFNEAKYCCTGEFESPELCKPSEYALFFKKKCPLAYSYPSDDESSTFSC-SR 335
Query: 212 ASYVISFC 219
A Y I+FC
Sbjct: 334 ADYTITFC 311
>TC14162 similar to UP|OLP1_LYCES (Q41350) Osmotin-like protein precursor,
partial (87%)
Length = 1232
Score = 40.4 bits (93), Expect = 2e-04
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 6/112 (5%)
Frame = +1
Query: 114 FNLPVTIYSVDLK--CKEIQCLVDMMSFCPD*L--AIYDSGGLKVGCKNACYTVGDQKLC 169
FN+P+T+ + K C + C D+++ CP L + G V CK+ C +LC
Sbjct: 445 FNVPMTVTPHEGKGVCPVVGCRSDLLATCPPVLHHRVPAVHGPVVACKSGCEAFHSDELC 624
Query: 170 CSAVYAFPKKCELNDYRQLVDDNCPYFISNAFNQTHFT--CYGTASYVISFC 219
C + + C+ + Y CP + A + T C + FC
Sbjct: 625 CRNHFNNAQTCKPSVYSTFFKHACPATFTFAHDTPSLTHECSSPRELKVIFC 780
>TC16995 similar to PIR|T05493|T05493 pathogenesis-related protein 19K4.140
- Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(22%)
Length = 614
Score = 38.1 bits (87), Expect = 0.001
Identities = 18/53 (33%), Positives = 29/53 (53%), Gaps = 2/53 (3%)
Frame = +1
Query: 169 CCSAVYAFPKKCELNDYRQLVDDNCPYFISNAFNQ--THFTCYGTASYVISFC 219
CC+ ++ P C+ + Y ++ CP S A++ + FTC G A Y I+FC
Sbjct: 10 CCNGAFSNPSTCKPSVYSEMFKSACPESYSYAYDDATSTFTCSG-ADYTITFC 165
>TC7964 homologue to UP|O81926 (O81926) Thaumatin-like protein PR-5b
precursor (Fragment), partial (74%)
Length = 778
Score = 35.0 bits (79), Expect = 0.010
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +2
Query: 114 FNLPVTIYSVDLKCKEIQCLVDMMSFCPD*LAIYDSGGLKVGCKNACYTVGDQKLCCS 171
FN+P+ + ++ C +I C D+ CP+ L GC N C + CC+
Sbjct: 410 FNIPMDFFPLNGGCHKISCTADINGQCPNELR------APGGCNNPCTAYKTNEFCCT 565
>TC7965 homologue to UP|O81926 (O81926) Thaumatin-like protein PR-5b
precursor (Fragment), partial (37%)
Length = 633
Score = 31.2 bits (69), Expect = 0.15
Identities = 22/92 (23%), Positives = 33/92 (34%), Gaps = 2/92 (2%)
Frame = +2
Query: 130 IQCLVDMMSFCPD*LAIYDSGGLKVGCKNACYTVGDQKLCCSAVYAFPKKCELNDYRQLV 189
I C D+ CP+ L GC N C + CC+ C ++ +
Sbjct: 2 ISCTADINGQCPNELRAPG------GCNNPCTVYKTNEFCCTNGQG---TCGPTNFSRFF 154
Query: 190 DDNC--PYFISNAFNQTHFTCYGTASYVISFC 219
D C Y + FTC ++Y + FC
Sbjct: 155 KDRCHDSYSYPQDDPTSTFTCPAGSNYKVVFC 250
>TC15261 weakly similar to UP|Q9ZQ55 (Q9ZQ55) At2g22570 protein, partial
(75%)
Length = 1031
Score = 26.9 bits (58), Expect = 2.7
Identities = 10/29 (34%), Positives = 16/29 (54%)
Frame = -3
Query: 191 DNCPYFISNAFNQTHFTCYGTASYVISFC 219
+N P +S F +TH Y +++I FC
Sbjct: 267 ENRPILLSKLFRKTHRFLYHLGNFLIGFC 181
>TC14500 UP|Q9S7B1 (Q9S7B1) Nodule INCEPTION protein, complete
Length = 3001
Score = 26.9 bits (58), Expect = 2.7
Identities = 12/34 (35%), Positives = 17/34 (49%)
Frame = -3
Query: 131 QCLVDMMSFCPD*LAIYDSGGLKVGCKNACYTVG 164
QC D +FC ++I D G V CK+ + G
Sbjct: 2306 QCFRDWRTFCHKNISIVDDGAWLVSCKSLAASRG 2205
>BP056260
Length = 463
Score = 26.6 bits (57), Expect = 3.6
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 18 PILIPSQDT-QLFPPESSSSPKTSILLMSPFMVGHDLG 54
P L PS T L P+S+ +P T++ + +P + DLG
Sbjct: 235 PCLFPSMRT*SLS*PDSTPAPATALRMFAPAPLKRDLG 348
>TC15735 similar to UP|Q9SI52 (Q9SI52) Expressed protein
(At2g03890/T18C20.9), partial (22%)
Length = 1187
Score = 25.8 bits (55), Expect = 6.1
Identities = 9/27 (33%), Positives = 16/27 (58%), Gaps = 1/27 (3%)
Frame = -1
Query: 174 YAFP-KKCELNDYRQLVDDNCPYFISN 199
Y FP KC + +L+ + CP+ +S+
Sbjct: 791 YGFPLSKCRIQQLLKLLQEQCPFILSH 711
>BP071489
Length = 373
Score = 25.8 bits (55), Expect = 6.1
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -2
Query: 111 GYNFNLPVTIYSVDLKCKEIQCLV--DMMSFCP 141
G++FN+ Y DL EIQ +V M+ FCP
Sbjct: 234 GFHFNVIYLDYDFDLDVIEIQGMVKEGMVLFCP 136
>TC14231
Length = 803
Score = 25.4 bits (54), Expect = 8.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 115 NLPVTIYSVDLKCKEIQCLVDMMSFCPD*LAIY 147
N PV S DL I+ + + FC D*L +Y
Sbjct: 671 NAPVCSLSYDLVLPIIKMSIFQLLFCED*LMVY 769
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.342 0.150 0.506
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,402,284
Number of Sequences: 28460
Number of extensions: 66386
Number of successful extensions: 501
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of query: 219
length of database: 4,897,600
effective HSP length: 87
effective length of query: 132
effective length of database: 2,421,580
effective search space: 319648560
effective search space used: 319648560
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (22.0 bits)
S2: 53 (25.0 bits)
Lotus: description of TM0323a.14