TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0323a.10
         (175 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP085408                                                              201  8e-53
TC10838 weakly similar to PIR|T04232|T04232 pathogenesis-related...   100  1e-22
AV779946                                                               92  4e-20
AW720061                                                               77  2e-15
TC19078 similar to UP|Q85FM6 (Q85FM6) Photosystem II protein M (...    28  0.88
TC12216 similar to GB|AAP13420.1|30023774|BT006312 At3g45600 {Ar...    27  1.5
TC18710                                                                26  4.4
AU240157                                                               26  4.4
CB829142                                                               25  5.7
AW164042                                                               25  5.7
BP033980                                                               25  7.4
BP059722                                                               25  7.4
TC19364 weakly similar to UP|Q8H146 (Q8H146) Putatative tyrosine...    25  7.4
AV773035                                                               25  7.4
AV779302                                                               25  9.7
BP056623                                                               25  9.7
TC15207 similar to UP|Q9FGP9 (Q9FGP9) Gb|AAF31706.1 (AT5g22790/K...    25  9.7

>BP085408 
          Length = 350

 Score =  201 bits (510), Expect = 8e-53
 Identities = 89/89 (100%), Positives = 89/89 (100%)
 Frame = -1

Query: 87  NKYGSNQDLGGMGWTPSVAVQDWVNEKEFYSYRTNSCVAPSFPCWHYTQVVWRKSKQVGC 146
           NKYGSNQDLGGMGWTPSVAVQDWVNEKEFYSYRTNSCVAPSFPCWHYTQVVWRKSKQVGC
Sbjct: 350 NKYGSNQDLGGMGWTPSVAVQDWVNEKEFYSYRTNSCVAPSFPCWHYTQVVWRKSKQVGC 171

Query: 147 AQLTCVVDKLILTICFYDPPGNINGESPY 175
           AQLTCVVDKLILTICFYDPPGNINGESPY
Sbjct: 170 AQLTCVVDKLILTICFYDPPGNINGESPY 84


>TC10838 weakly similar to PIR|T04232|T04232 pathogenesis-related protein
           homolog F14M19.60 - Arabidopsis                thaliana
           {Arabidopsis thaliana;}, partial (78%)
          Length = 914

 Score =  100 bits (249), Expect = 1e-22
 Identities = 55/144 (38%), Positives = 81/144 (56%), Gaps = 4/144 (2%)
 Frame = +3

Query: 36  EAKEFLDAHNWARAEVGVEPLEWSEALAKDAGLFARYQRDRLGCKLAN-FSHNKYGSNQD 94
           E+ EFL  HN  RA     PL W   L   A  +A  ++    CK+ + F  N +   ++
Sbjct: 363 ESLEFLFRHNMVRAAKWESPLMWDFQLQSYARWWAGQRKP--DCKVEHSFPENDFKLGEN 536

Query: 95  L---GGMGWTPSVAVQDWVNEKEFYSYRTNSCVAPSFPCWHYTQVVWRKSKQVGCAQLTC 151
           +    G  WTP+ AV+ W +E+++Y+Y TN+C      C HYTQ+VW+ +K+VGCA++ C
Sbjct: 537 IFWGSGSAWTPTDAVKAWADEEKYYTYATNTCEEGQM-CGHYTQIVWKNTKRVGCARVVC 713

Query: 152 VVDKLILTICFYDPPGNINGESPY 175
               + +T C YDP GN  GE PY
Sbjct: 714 DDGDVFMT-CNYDPVGNYVGERPY 782


>AV779946 
          Length = 533

 Score = 92.4 bits (228), Expect = 4e-20
 Identities = 48/101 (47%), Positives = 60/101 (58%), Gaps = 1/101 (0%)
 Frame = -3

Query: 76  RLGCKLANFSHNKYGSNQDLG-GMGWTPSVAVQDWVNEKEFYSYRTNSCVAPSFPCWHYT 134
           R  C L + S+  YG N   G G GW PS AV  WV E+++Y+Y  NSC A    C HYT
Sbjct: 501 RNDCALEH-SNGPYGENIFWGSGTGWKPSPAVDAWVEERQWYNYWHNSC-ANGEMCGHYT 328

Query: 135 QVVWRKSKQVGCAQLTCVVDKLILTICFYDPPGNINGESPY 175
           Q+VW  +++VGCA +TC   +     C YDPPGN  GE PY
Sbjct: 327 QIVWGDTRKVGCASVTCSGGQGTFMTCNYDPPGNYYGERPY 205


>AW720061 
          Length = 304

 Score = 76.6 bits (187), Expect = 2e-15
 Identities = 36/68 (52%), Positives = 46/68 (66%), Gaps = 1/68 (1%)
 Frame = +1

Query: 59  SEALAKDAGLFARYQRDRLGCKLANFSHNKYGSNQDL-GGMGWTPSVAVQDWVNEKEFYS 117
           SE L KDA LF RYQR++ GC  AN + ++YG NQ + G +   P VAV +WV EK+FY 
Sbjct: 4   SEKLGKDASLFVRYQRNKFGCGFANLTDSEYGGNQIMAGSVSVAPRVAVAEWVKEKDFYI 183

Query: 118 YRTNSCVA 125
           +  NSCVA
Sbjct: 184 HANNSCVA 207



 Score = 44.7 bits (104), Expect = 9e-06
 Identities = 26/65 (40%), Positives = 33/65 (50%)
 Frame = +3

Query: 94  DLGGMGWTPSVAVQDWVNEKEFYSYRTNSCVAPSFPCWHYTQVVWRKSKQVGCAQLTCVV 153
           D GG G   +      V E E + +     V     C  YTQVVWR SK+VGC+Q +CV 
Sbjct: 108 DHGGFGVGGAARGGGGVGEGEGFLHPRE*LVRGGT*CGVYTQVVWRDSKEVGCSQASCVK 287

Query: 154 DKLIL 158
           +K  L
Sbjct: 288 EKASL 302


>TC19078 similar to UP|Q85FM6 (Q85FM6) Photosystem II protein M (Fragment),
           partial (37%)
          Length = 603

 Score = 28.1 bits (61), Expect = 0.88
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 96  GGMGWTPSVAVQDWVNEKEFYSYRTNSC 123
           GG  W P   ++DW+    ++  R N+C
Sbjct: 463 GGFVWGPVQVLRDWLGASAYHFARVNAC 546


>TC12216 similar to GB|AAP13420.1|30023774|BT006312 At3g45600 {Arabidopsis
           thaliana;}, partial (30%)
          Length = 570

 Score = 27.3 bits (59), Expect = 1.5
 Identities = 16/67 (23%), Positives = 27/67 (39%)
 Frame = +2

Query: 109 WVNEKEFYSYRTNSCVAPSFPCWHYTQVVWRKSKQVGCAQLTCVVDKLILTICFYDPPGN 168
           W N++ F  YR +SC A         +  WRK   +    +  +V   I+    Y     
Sbjct: 110 WSNDQGFLCYRCDSCKAGVLAS---LKKSWRKVSVINIVVMIILVIVYIIAYAAYRNNKR 280

Query: 169 INGESPY 175
           ++ + PY
Sbjct: 281 MDNDEPY 301


>TC18710 
          Length = 843

 Score = 25.8 bits (55), Expect = 4.4
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
 Frame = +1

Query: 113 KEFYSYRTNSC----VAPSFPCWHYTQVVWRKS 141
           K  YS +T+S      A SFPC+  T   W+KS
Sbjct: 460 KWLYSRKTDSR*FTDCAGSFPCYKQTGCTWQKS 558


>AU240157 
          Length = 300

 Score = 25.8 bits (55), Expect = 4.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 124 VAPSFPCWHYTQVVWRKSKQ 143
           V+ SF C+HY   +WRK ++
Sbjct: 166 VSNSFNCFHYHLRIWRKRRR 107


>CB829142 
          Length = 534

 Score = 25.4 bits (54), Expect = 5.7
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 99  GWTPSVAVQDWVNEKEFYSYRTNSC 123
           GW P   V   +NE EF+ +    C
Sbjct: 202 GWDPETVVDYRINEDEFHKFSLLDC 276


>AW164042 
          Length = 404

 Score = 25.4 bits (54), Expect = 5.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 144 VGCAQLTCVVDKLILTICFYDP 165
           VGC   TCVVD    TI  ++P
Sbjct: 178 VGCPLSTCVVDTFATTIGTHEP 243


>BP033980 
          Length = 615

 Score = 25.0 bits (53), Expect = 7.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 113 KEFYSYRTNSCVAPSFPCWH 132
           K +Y +   +C +P FP WH
Sbjct: 313 KIYYGWC*QTCGSPGFPVWH 372


>BP059722 
          Length = 473

 Score = 25.0 bits (53), Expect = 7.4
 Identities = 8/27 (29%), Positives = 15/27 (54%)
 Frame = -1

Query: 129 PCWHYTQVVWRKSKQVGCAQLTCVVDK 155
           PC+H+  +VW     +G A++   + K
Sbjct: 260 PCFHFPVIVWSCHPNLGLAEVLIQIKK 180


>TC19364 weakly similar to UP|Q8H146 (Q8H146) Putatative tyrosine
           aminotransferase, partial (14%)
          Length = 387

 Score = 25.0 bits (53), Expect = 7.4
 Identities = 10/30 (33%), Positives = 15/30 (49%)
 Frame = -3

Query: 45  NWARAEVGVEPLEWSEALAKDAGLFARYQR 74
           NW R  + V+P E  E L++      RY +
Sbjct: 304 NWLRISLAVDPSELEEGLSRIKAFSLRYAK 215


>AV773035 
          Length = 459

 Score = 25.0 bits (53), Expect = 7.4
 Identities = 14/46 (30%), Positives = 24/46 (51%), Gaps = 5/46 (10%)
 Frame = -1

Query: 120 TNSCVAPSF-----PCWHYTQVVWRKSKQVGCAQLTCVVDKLILTI 160
           + +CV  SF     PC+ +  ++ R S ++ C  LTC + K  L +
Sbjct: 459 SKACVYRSFWWWL*PCFIFGHILSRDSCKLRCKILTCPLKKQSLLL 322


>AV779302 
          Length = 509

 Score = 24.6 bits (52), Expect = 9.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 100 WTPSVAVQDWVNEKEFYSYRTNS 122
           + P+ +   WV ++ F SYRT+S
Sbjct: 425 YVPTPSQYPWVGQQPFNSYRTSS 493


>BP056623 
          Length = 451

 Score = 24.6 bits (52), Expect = 9.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 97  GMGWTPSVAVQDWVNEKEFYSYRTNSC 123
           G GW P V + D + +      RT+SC
Sbjct: 404 GPGWVPPVLLLD*MGDMSVSPLRTSSC 324


>TC15207 similar to UP|Q9FGP9 (Q9FGP9) Gb|AAF31706.1 (AT5g22790/K8E10_2),
           partial (55%)
          Length = 1195

 Score = 24.6 bits (52), Expect = 9.7
 Identities = 8/27 (29%), Positives = 15/27 (54%)
 Frame = +3

Query: 129 PCWHYTQVVWRKSKQVGCAQLTCVVDK 155
           PC+H+  +VW     +G A++   + K
Sbjct: 759 PCFHFPVIVWSFHPNLGIAKVLIQIKK 839


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.135    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,718,715
Number of Sequences: 28460
Number of extensions: 56593
Number of successful extensions: 266
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of query: 175
length of database: 4,897,600
effective HSP length: 84
effective length of query: 91
effective length of database: 2,506,960
effective search space: 228133360
effective search space used: 228133360
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)