TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0322.5
         (210 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP049568                                                               49  6e-07
BP034164                                                               40  2e-04
BU494131                                                               39  7e-04
BG662105                                                               37  0.002
TC17037 similar to UP|Q8LRK7 (Q8LRK7) HDA2 (Fragment), partial (...    29  0.69
TC14863                                                                28  0.90
TC13899 similar to UP|O82188 (O82188) At2g19930 protein, partial...    28  1.5
BP082031                                                               27  2.0
AV770452                                                               25  7.6
TC14130 similar to UP|ATPG_PEA (P28552) ATP synthase gamma chain...    25  7.6
AV778904                                                               25  9.9
TC15818 similar to UP|Q9FFF6 (Q9FFF6) Leucoanthocyanidin dioxyge...    25  9.9
TC11876                                                                25  9.9
AV765027                                                               25  9.9

>BP049568 
          Length = 598

 Score = 48.9 bits (115), Expect = 6e-07
 Identities = 23/78 (29%), Positives = 46/78 (58%)
 Frame = -1

Query: 126 DLAKDEHLDPINVKIAELREALESIITEQKYLKARDNRHRYTNESTKTRVIFYTVLEYIL 185
           ++AK E ++ + +++ +L  ++ +I+   KYLK R+   R  +E T TRV  ++++   +
Sbjct: 592 EVAKKEKIEGVELELRKLEGSVTAILENLKYLKGREAEMRSVSEKTNTRVATFSIMSLGI 413

Query: 186 LAVTSILQVVYIRRLFSK 203
             V S LQ+  ++R F K
Sbjct: 412 CIVVSALQLWRLKRYFQK 359


>BP034164 
          Length = 515

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 33/134 (24%), Positives = 61/134 (44%), Gaps = 6/134 (4%)
 Frame = +1

Query: 33  ECVSEHAQSGDSVTGNF-VVMDHDIFWSSDHPGIDFTVTNPGGNAVHSLKGTSGDKFEFK 91
           +C++E  +S     G + +V  ++ +   D   I   V++P GN+ H+        F F 
Sbjct: 112 KCITEDIKSNAMSVGKYSIVNPNEGYPIPDTHKITVKVSSPYGNSYHNGDQVDSGDFAFT 291

Query: 92  APQNGIYKFCFHNPMS----TPETVSFYIHVGHIPSE-HDLAKDEHLDPINVKIAELREA 146
           A ++G Y  CF  P S    +  T+ F    G    +   +AK   ++ +  ++ +L + 
Sbjct: 292 AAEDGDYTACFWIPDSRAGVSIVTIEFDWRTGVAAKDWSKVAKKGQVEVMEFELKKLYDT 471

Query: 147 LESIITEQKYLKAR 160
           + SI  E  YL+ R
Sbjct: 472 VASIHEEMFYLRER 513


>BU494131 
          Length = 381

 Score = 38.9 bits (89), Expect = 7e-04
 Identities = 19/57 (33%), Positives = 28/57 (48%), Gaps = 1/57 (1%)
 Frame = +2

Query: 33  ECVSEHAQ-SGDSVTGNFVVMDHDIFWSSDHPGIDFTVTNPGGNAVHSLKGTSGDKF 88
           EC S   +  GD+V  +FVV+  D  W     G+D  V  P G  +H  +  + +KF
Sbjct: 209 ECFSHDVKYEGDTVHISFVVIKADSPWHYGDEGVDLVVKGPAGEQIHDFRDKTSEKF 379


>BG662105 
          Length = 342

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 27/102 (26%), Positives = 47/102 (45%), Gaps = 6/102 (5%)
 Frame = +3

Query: 63  PGIDFTVTNPGGNAVHSLKGTSGDKFEFKAPQNGIYKFCF-----HNPMSTPETVSFYIH 117
           P +   VT+P GN +H  +  +  +  F A ++G Y  CF     H   +    +S    
Sbjct: 36  PTVSAKVTSPYGNNLHHNENVTQGQSAFTATESGNYMACFWIDGKHQEAAGGTILSLEWK 215

Query: 118 VGHIPSEHD-LAKDEHLDPINVKIAELREALESIITEQKYLK 158
            G    + D +AK E L+ + +++ +L   +E+I     YLK
Sbjct: 216 TGISAKDWDSVAKKEKLEGVXLELRKLEGXVEAIRDNLIYLK 341


>TC17037 similar to UP|Q8LRK7 (Q8LRK7) HDA2 (Fragment), partial (39%)
          Length = 774

 Score = 28.9 bits (63), Expect = 0.69
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 177 FYTVLEYILLAVTSILQVVYIRRLFS 202
           FY+   Y +L  T ILQ++Y++  FS
Sbjct: 618 FYSYFMYHILTFTDILQLIYVKHXFS 541


>TC14863 
          Length = 1803

 Score = 28.5 bits (62), Expect = 0.90
 Identities = 13/29 (44%), Positives = 15/29 (50%)
 Frame = -3

Query: 89  EFKAPQNGIYKFCFHNPMSTPETVSFYIH 117
           E K P  G+ K+C  NP  TP    F IH
Sbjct: 727 EMKKPSTGLIKYCARNP--TPTVHGFRIH 647


>TC13899 similar to UP|O82188 (O82188) At2g19930 protein, partial (10%)
          Length = 626

 Score = 27.7 bits (60), Expect = 1.5
 Identities = 16/76 (21%), Positives = 28/76 (36%)
 Frame = +2

Query: 34  CVSEHAQSGDSVTGNFVVMDHDIFWSSDHPGIDFTVTNPGGNAVHSLKGTSGDKFEFKAP 93
           CV   + + +   G+F   D D++W S HP +  ++     +  +               
Sbjct: 269 CVGPRSIADEIAGGDF---DGDLYWVSKHPQVSISILVQKSSCTYQ-------------- 397

Query: 94  QNGIYKFCFHNPMSTP 109
              I  +C H P S P
Sbjct: 398 ---I*SYCIHTPFSVP 436


>BP082031 
          Length = 208

 Score = 27.3 bits (59), Expect = 2.0
 Identities = 12/35 (34%), Positives = 20/35 (56%)
 Frame = +1

Query: 60  SDHPGIDFTVTNPGGNAVHSLKGTSGDKFEFKAPQ 94
           SD P + +T+T PG N V  +   +G+   +K+ Q
Sbjct: 94  SDQPKVSYTLTRPGSNQV-QINLATGNTLSYKSVQ 195


>AV770452 
          Length = 237

 Score = 25.4 bits (54), Expect = 7.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 134 DPINVKIAELREALESIITEQKYLKARDNRHRY 166
           DP+++KI +    L   I   +Y++A    HRY
Sbjct: 52  DPVSIKILQAYSYL*GCINISRYVEASHIAHRY 150


>TC14130 similar to UP|ATPG_PEA (P28552) ATP synthase gamma chain,
           chloroplast precursor  , partial (94%)
          Length = 1527

 Score = 25.4 bits (54), Expect = 7.6
 Identities = 12/47 (25%), Positives = 24/47 (50%)
 Frame = +3

Query: 113 SFYIHVGHIPSEHDLAKDEHLDPINVKIAELREALESIITEQKYLKA 159
           S +++   +PS++       + P+   + ELR  +ES+   QK  +A
Sbjct: 174 SIHLNPFQLPSQNSPPSRISVSPVQCGLRELRTRIESVKNTQKITEA 314


>AV778904 
          Length = 541

 Score = 25.0 bits (53), Expect = 9.9
 Identities = 9/21 (42%), Positives = 12/21 (56%)
 Frame = -1

Query: 3   WFSKICTLVIFFLGTLIYNVF 23
           W   +C    FF+GT+I  VF
Sbjct: 394 WLFYLCHYATFFIGTIICGVF 332


>TC15818 similar to UP|Q9FFF6 (Q9FFF6) Leucoanthocyanidin dioxygenase-like
           protein (AT5g05600/MOP10_14), partial (37%)
          Length = 618

 Score = 25.0 bits (53), Expect = 9.9
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 15  LGTLIYNVFSLSISLNDVECVSEHAQS 41
           +G  +YN++ L +S   V+C S H ++
Sbjct: 487 IGIFLYNMYGLKLSCFRVQCNSLHGKN 567


>TC11876 
          Length = 541

 Score = 25.0 bits (53), Expect = 9.9
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
 Frame = -1

Query: 34  CVSEHAQSGDSVTGNFVVMDHDIF-WSSDHPGIDFTVTNPGGNAVHSLKGTSGDKFEFKA 92
           C  E+   G +   N+ +MD  +  W+  H    + V + G N    +  +         
Sbjct: 229 CACENDLGGSTNDINWYIMD*QLLNWNIIH---QWAVMH*GNNLC*IIDSSH-------V 80

Query: 93  PQNGIYKFCFHNPMSTPETVS 113
           PQ+ I+KFC    +S P T S
Sbjct: 79  PQHTIFKFCKSLSLSQPSTSS 17


>AV765027 
          Length = 491

 Score = 25.0 bits (53), Expect = 9.9
 Identities = 11/34 (32%), Positives = 17/34 (49%)
 Frame = -2

Query: 62  HPGIDFTVTNPGGNAVHSLKGTSGDKFEFKAPQN 95
           HPG+   V   GG+   SL     D + F+ P++
Sbjct: 445 HPGVTKIVVRDGGSVELSLDHLELDMWRFRLPES 344


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.138    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,659,928
Number of Sequences: 28460
Number of extensions: 48598
Number of successful extensions: 264
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of query: 210
length of database: 4,897,600
effective HSP length: 86
effective length of query: 124
effective length of database: 2,450,040
effective search space: 303804960
effective search space used: 303804960
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)