TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0321.6
         (497 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC19814 homologue to UP|Q94C37 (Q94C37) At1g05230/YUP8H12_16, pa...    67  9e-12
AV407274                                                               55  2e-08
AV774562                                                               45  3e-05
TC10145 similar to UP|Q8LJS8 (Q8LJS8) Homeodomain protein GhHOX1...    35  0.037
BP039310                                                               30  1.2
TC9979 similar to UP|HIR5_MOUSE (Q9QZ23) HIRA-interacting protei...    29  1.5
TC9297 similar to UP|O65281 (O65281) ARABIDOPSIS THALIANA homeod...    27  7.7

>TC19814 homologue to UP|Q94C37 (Q94C37) At1g05230/YUP8H12_16, partial (17%)
          Length = 389

 Score = 66.6 bits (161), Expect = 9e-12
 Identities = 40/112 (35%), Positives = 65/112 (57%), Gaps = 7/112 (6%)
 Frame = +3

Query: 270 GEVKLLDGRKSVINLSNRMVGSFFKVLN--TQGIQNLLDPSNQLTTSIKLIAHRNTILD- 326
           G +   DGRKS++ L+ RMV SF   ++  T      +  +   T  ++++  R ++ D 
Sbjct: 54  GVITNQDGRKSMLKLAERMVISFCAGVSASTAHTWTTISGTGAETDDVRVMT-RKSVDDP 230

Query: 327 ----GIVVIAVSSIWLPVTPKNLFLFLKDEFRKAEWDFLAGGRPMRQKAHIS 374
               GIV+ A +S WLPV PK +F FL+DE  ++EWD L+ G  +++ AHI+
Sbjct: 231 GRPPGIVLSAATSFWLPVPPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIA 386


>AV407274 
          Length = 285

 Score = 55.5 bits (132), Expect = 2e-08
 Identities = 23/48 (47%), Positives = 35/48 (72%)
 Frame = +2

Query: 327 GIVVIAVSSIWLPVTPKNLFLFLKDEFRKAEWDFLAGGRPMRQKAHIS 374
           GIV+ A +S+W+PV+   LF FL+DE  ++EWD L+ G PM++  HI+
Sbjct: 128 GIVLSAATSVWMPVSRHRLFDFLRDEQLRSEWDILSNGGPMQEMVHIA 271


>AV774562 
          Length = 460

 Score = 45.1 bits (105), Expect = 3e-05
 Identities = 38/139 (27%), Positives = 60/139 (42%), Gaps = 2/139 (1%)
 Frame = +3

Query: 156 REYFFLRYCQQVEAGEWLIVDVSLDSFGNCAS--RSVAKKFPSGCRIRELPNGCCMVTWV 213
           RE + +RYC+Q+   +W IVDVS+D     ++   S A+       +R         +  
Sbjct: 3   REVYLVRYCKQLSGEQWAIVDVSIDKVKTTSTLPSSNAENAHPVALLRTSQMAIAK*SG* 182

Query: 214 EQVEVGQSFQLDMLVRDIVRNNIAYGAKRWLLELQRTFEKKACSEFSYTASTEGLEGEVK 273
              E  Q   +  + R IV + +A+GA+ W+  LQ   E+     F  T         V 
Sbjct: 183 STCEC-QKGAVHTMYRAIVNSGLAFGARHWIATLQLQCERLVF--FMATNVPMKDSTGVA 353

Query: 274 LLDGRKSVINLSNRMVGSF 292
               RKS++ L+ RM   F
Sbjct: 354 TWAERKSILKLAQRMTWGF 410


>TC10145 similar to UP|Q8LJS8 (Q8LJS8) Homeodomain protein GhHOX1, partial
           (9%)
          Length = 536

 Score = 34.7 bits (78), Expect = 0.037
 Identities = 22/66 (33%), Positives = 35/66 (52%), Gaps = 3/66 (4%)
 Frame = +1

Query: 435 PSGFTISRDGREGNEGSLLTMCFQVLVDEEGSSSQVRKKTLESIDSSCMLM---LQRIKD 491
           P   T  ++ +    GSL T+ FQ+L     ++S   K T+ES+DS   L+   L+ I+ 
Sbjct: 22  PLVITTRKEEKNTEGGSLFTIAFQILT----NASPTAKLTVESVDSVNTLVSCTLRNIRT 189

Query: 492 ALHCSD 497
           +L C D
Sbjct: 190 SLQCED 207


>BP039310 
          Length = 584

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 304 LLDPSNQLTTSIKLIAHRNTILDGIVVIAVSSI 336
           +L   +  TTS+ L+ HR T +DG V IA+ ++
Sbjct: 234 ILSLDHHTTTSLHLLQHRETTIDGSVQIALRNL 332


>TC9979 similar to UP|HIR5_MOUSE (Q9QZ23) HIRA-interacting protein 5
           (mHIRIP5), partial (36%)
          Length = 1304

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 34/123 (27%), Positives = 52/123 (41%), Gaps = 10/123 (8%)
 Frame = +2

Query: 325 LDGIVVIAVSSIWLPVTPKN--LFLFLKDEFRKAEWDFLAGGRPMRQKAHISINESNHV- 381
           +DGI  I   S ++ VT      + FLK E   A  DF + G+P+   +  S      + 
Sbjct: 341 IDGITRIFFGSDFVTVTKSEDASWEFLKPEIFAAIMDFYSSGQPLFLDSQTSAAMDTAIK 520

Query: 382 -SILQTSSIIGEHMVIFQESSIDDLGGYVVYAPID------KLDAYMIVNGCDSSKKLIL 434
               +  ++I E +      ++ D GG +VY   D      KL      +GC SS  + L
Sbjct: 521 DDDSEIVAMIKELLETRIRPAVQDDGGDIVYRGSDPDTGIVKLQMQGACSGCPSS-SVTL 697

Query: 435 PSG 437
            SG
Sbjct: 698 KSG 706


>TC9297 similar to UP|O65281 (O65281) ARABIDOPSIS THALIANA homeodomain
           protein AHDP (SP:P93041), partial (7%)
          Length = 598

 Score = 26.9 bits (58), Expect = 7.7
 Identities = 18/64 (28%), Positives = 36/64 (56%)
 Frame = +3

Query: 427 DSSKKLILPSGFTISRDGREGNEGSLLTMCFQVLVDEEGSSSQVRKKTLESIDSSCMLML 486
           DSS K         + DG  G+ G LLT+ FQ+LV+    ++ +  ++++++++     +
Sbjct: 24  DSSNKSSTSQKGVAAADG--GSGGCLLTVGFQILVNNM-PTANLSVESVDTVNNLISCTI 194

Query: 487 QRIK 490
           Q+IK
Sbjct: 195 QKIK 206


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.319    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,176,150
Number of Sequences: 28460
Number of extensions: 107850
Number of successful extensions: 435
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of query: 497
length of database: 4,897,600
effective HSP length: 94
effective length of query: 403
effective length of database: 2,222,360
effective search space: 895611080
effective search space used: 895611080
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)