TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0320b.5
         (930 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8084 similar to UP|PIF1_YEAST (P07271) DNA repair and recombin...   184  6e-47
BP046665                                                              174  8e-44
TC15490 weakly similar to UP|Q9LTU4 (Q9LTU4) Helicase-like prote...   146  3e-41
BP085968                                                               82  3e-31
TC8086 similar to UP|DMC1_HUMAN (Q14565) Meiotic recombination p...    95  2e-28
BP065488                                                               97  2e-20
AU089042                                                               71  9e-13
TC11129 weakly similar to UP|PDA6_MEDSA (P38661) Probable protei...    65  5e-11
TC16645                                                                54  1e-07
TC14212 similar to UP|Q9FN61 (Q9FN61) Gb|AAF07369.1, partial (10%)     47  1e-05
BP046554                                                               38  0.006
BP063650                                                               31  0.22
TC17027 similar to UP|Q93XA5 (Q93XA5) Homeodomain leucine zipper...    28  6.7
TC9679 weakly similar to UP|Q8H1B5 (Q8H1B5) Hin1-like protein, p...    28  6.7
TC9013                                                                 28  6.7

>TC8084 similar to UP|PIF1_YEAST (P07271) DNA repair and recombination
           protein PIF1, mitochondrial precursor, partial (4%)
          Length = 560

 Score =  184 bits (467), Expect = 6e-47
 Identities = 89/135 (65%), Positives = 109/135 (79%)
 Frame = +1

Query: 796 IDQSAGLCNGTRLIVSALTPYIIVATALSGSKTGKPVYIPRLSLTPSDTGLPFKFSRRQF 855
           I +   LCNGTRLIV  L  Y+I AT ++G+  G  ++IPRL + PSD+G PFKF RR F
Sbjct: 43  IQKFENLCNGTRLIVVDLGTYVIKATVITGTNIGDDIFIPRLDMVPSDSGYPFKFERR*F 222

Query: 856 PITVCFAMTINKSQGQSLSHVGLYLPRPVFTHGQLYVALSRVKSRKRLKILIVDDKGVVS 915
           PI++CFAMTINKSQGQSLSHV LYL RPVFTHGQLYVALSRV+SRK LK+L++D++  V+
Sbjct: 223 PISLCFAMTINKSQGQSLSHVSLYLSRPVFTHGQLYVALSRVRSRKGLKLLVLDEEEKVT 402

Query: 916 NCTRNVVYEEVFQNI 930
           N T+NVVY EVF+NI
Sbjct: 403 NTTKNVVYREVFENI 447


>BP046665 
          Length = 524

 Score =  174 bits (440), Expect = 8e-44
 Identities = 85/136 (62%), Positives = 105/136 (76%)
 Frame = -1

Query: 771 DLKCSGIPNHRIVLKVGVPIMLIQNIDQSAGLCNGTRLIVSALTPYIIVATALSGSKTGK 830
           D+ C GIPNH+I LK G PIML++NI Q+ G CNGTRLIV+ L   +I AT ++ +  G 
Sbjct: 524 DITCFGIPNHKITLKEGAPIMLLRNIYQAVGFCNGTRLIVADLGTNVIKATVIT*TNIGD 345

Query: 831 PVYIPRLSLTPSDTGLPFKFSRRQFPITVCFAMTINKSQGQSLSHVGLYLPRPVFTHGQL 890
            ++IPR+ + PSD+G PFKF RRQFPI++C AMTINKSQGQSLSHVGLYL R VFTHGQL
Sbjct: 344 DIFIPRMDMVPSDSGYPFKFERRQFPISLCSAMTINKSQGQSLSHVGLYLSRHVFTHGQL 165

Query: 891 YVALSRVKSRKRLKIL 906
           YVAL   K +KR +I+
Sbjct: 164 YVAL-HAKIKKRTQII 120



 Score = 38.9 bits (89), Expect = 0.004
 Identities = 18/45 (40%), Positives = 31/45 (68%)
 Frame = -2

Query: 879 YLPRPVFTHGQLYVALSRVKSRKRLKILIVDDKGVVSNCTRNVVY 923
           Y+   +++H      LS ++SRK LK+L++D++  V+N T+NVVY
Sbjct: 202 YIFLAMYSHMVSCTLLSMLRSRKGLKLLVLDEEEKVTNTTKNVVY 68


>TC15490 weakly similar to UP|Q9LTU4 (Q9LTU4) Helicase-like protein, partial
           (8%)
          Length = 634

 Score =  146 bits (368), Expect(3) = 3e-41
 Identities = 69/113 (61%), Positives = 90/113 (79%)
 Frame = +2

Query: 818 IVATALSGSKTGKPVYIPRLSLTPSDTGLPFKFSRRQFPITVCFAMTINKSQGQSLSHVG 877
           I  T ++G+  G  + IPR+ + PSD+  PFKF RRQ PI++CFAMTINKSQG+SLSHVG
Sbjct: 137 IQVTVITGTHIGDDISIPRMDMVPSDSSYPFKFERRQSPISLCFAMTINKSQGRSLSHVG 316

Query: 878 LYLPRPVFTHGQLYVALSRVKSRKRLKILIVDDKGVVSNCTRNVVYEEVFQNI 930
           LYL RPV THG LYVAL RV+SRK LK+L++D++  ++N T+NVVY E+F+NI
Sbjct: 317 LYLSRPVSTHG*LYVALPRVRSRK*LKLLVLDEEEKMTNTTKNVVYREIFENI 475



 Score = 38.9 bits (89), Expect(3) = 3e-41
 Identities = 18/26 (69%), Positives = 22/26 (84%)
 Frame = +1

Query: 785 KVGVPIMLIQNIDQSAGLCNGTRLIV 810
           K G  IML++NI Q++GLCNGTRLIV
Sbjct: 43  KEGALIMLLRNIVQASGLCNGTRLIV 120



 Score = 22.3 bits (46), Expect(3) = 3e-41
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 772 LKCSGIPNHRIVLK 785
           + CS IPNH+I  K
Sbjct: 3   ITCSDIPNHKITEK 44


>BP085968 
          Length = 341

 Score = 81.6 bits (200), Expect(2) = 3e-31
 Identities = 38/47 (80%), Positives = 43/47 (90%)
 Frame = +2

Query: 471 FFFLYGFGGSGKTFVWNTLSAALRSEGKIVLNVASSGIASLLLPGGR 517
           F+FLYGFGGSGKTFVWNT S+ LRS+G +VLNVASSGIAS LLPGG+
Sbjct: 74  FYFLYGFGGSGKTFVWNTWSSGLRSQGLMVLNVASSGIASWLLPGGK 214



 Score = 71.6 bits (174), Expect(2) = 3e-31
 Identities = 33/43 (76%), Positives = 39/43 (89%)
 Frame = +3

Query: 517 RTAHSRFSIPITIHESSTCNVRQGSHKAEMLQKASLIIWDEAP 559
           RTAHSRFSI I+I++ STCN++QGS KAE+LQKAS IIWDEAP
Sbjct: 213 RTAHSRFSIHISINDISTCNIKQGSQKAELLQKASSIIWDEAP 341


>TC8086 similar to UP|DMC1_HUMAN (Q14565) Meiotic recombination protein
           DMC1/LIM15 homolog, partial (12%)
          Length = 628

 Score = 94.7 bits (234), Expect(2) = 2e-28
 Identities = 44/75 (58%), Positives = 56/75 (74%)
 Frame = +1

Query: 796 IDQSAGLCNGTRLIVSALTPYIIVATALSGSKTGKPVYIPRLSLTPSDTGLPFKFSRRQF 855
           I +   LC+GTRLIV  L  Y+I AT ++G+  G  ++IPRL + PSD+G PFKF RR F
Sbjct: 151 IQKFENLCHGTRLIVVDLGTYVIKATVITGTNIGDDIFIPRLDMVPSDSGYPFKFERR*F 330

Query: 856 PITVCFAMTINKSQG 870
           PI++CFAMTINKSQG
Sbjct: 331 PISLCFAMTINKSQG 375



 Score = 49.3 bits (116), Expect(2) = 2e-28
 Identities = 22/36 (61%), Positives = 31/36 (86%)
 Frame = +3

Query: 895 SRVKSRKRLKILIVDDKGVVSNCTRNVVYEEVFQNI 930
           SRV+SRK LK+L++D++  V+N T+NVVY EVF+NI
Sbjct: 369 SRVRSRKGLKLLVLDEEEKVTNTTKNVVYREVFENI 476


>BP065488 
          Length = 439

 Score = 96.7 bits (239), Expect = 2e-20
 Identities = 52/104 (50%), Positives = 73/104 (70%), Gaps = 2/104 (1%)
 Frame = -1

Query: 829 GKPVYIPRLSLTPSDTGLPFKFSRRQFPITVCFAMTINKSQGQ-SLSHVGLYLPRPVFTH 887
           G  ++IPR+++ PS +G P KF R QFPI++CFAMTINKSQ       V L      ++H
Sbjct: 379 GDDIFIPRMNMVPSVSGDPLKFERCQFPISLCFAMTINKSQXSVHYPTVALISFLACYSH 200

Query: 888 -GQLYVALSRVKSRKRLKILIVDDKGVVSNCTRNVVYEEVFQNI 930
             +LYVALS V+SRK LK+L++ ++  V+N T+N VY+EVF+NI
Sbjct: 199 MDKLYVALSGVRSRKGLKLLVLGEEEKVTNATKNEVYQEVFKNI 68


>AU089042 
          Length = 191

 Score = 70.9 bits (172), Expect = 9e-13
 Identities = 36/61 (59%), Positives = 43/61 (70%)
 Frame = +3

Query: 783 VLKVGVPIMLIQNIDQSAGLCNGTRLIVSALTPYIIVATALSGSKTGKPVYIPRLSLTPS 842
           VLK GVP+ML+ N+  S GLCNGTRLIV  L P +I AT LSG+  G  VYI  ++L PS
Sbjct: 6   VLKXGVPVMLMXNLXISTGLCNGTRLIVDYLGPNVIGATILSGTHIGXVVYISMMNLXPS 185

Query: 843 D 843
           D
Sbjct: 186 D 188


>TC11129 weakly similar to UP|PDA6_MEDSA (P38661) Probable protein disulfide
           isomerase A6 precursor  (P5) , partial (7%)
          Length = 600

 Score = 65.1 bits (157), Expect = 5e-11
 Identities = 27/46 (58%), Positives = 37/46 (79%)
 Frame = +2

Query: 721 PTLESVEEVNNFMMSMIPGEETKYLSYDTPCRSDEDSEIDAEWFTS 766
           PTLESVE+VN FM+ ++PG  T+YLS DT C+ DED+E+ + WFT+
Sbjct: 458 PTLESVEKVNEFMLDLLPGNTTEYLSSDTTCKYDEDTELQS*WFTT 595


>TC16645 
          Length = 596

 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 36/95 (37%), Positives = 47/95 (48%)
 Frame = +2

Query: 227 TRREEV*RMLNIRLCLFIRKISKYGSQEREVSPLVVFNISL*AWARYIT*GFY*PNREAV 286
           TRR E+  M N  L  F       G   ++   LV  ++ L  W R     FY*P ++ V
Sbjct: 26  TRRGEISHMQNFLLSFFTTNTQPNGFLSKKDFLLVGCHLLLQEWERITICVFY*PCKKVV 205

Query: 287 TVLQV*ELSKGLFIQHSKMRAMLWD*WKMRGSMLM 321
           TVL+ *+  +  FI  S M A  WD W+M  SMLM
Sbjct: 206 TVLKA*KRLRVWFIPLSMMHAKQWDCWRMIASMLM 310


>TC14212 similar to UP|Q9FN61 (Q9FN61) Gb|AAF07369.1, partial (10%)
          Length = 613

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 24/41 (58%), Positives = 29/41 (70%)
 Frame = +2

Query: 890 LYVALSRVKSRKRLKILIVDDKGVVSNCTRNVVYEEVFQNI 930
           LYVA+SRVKS+  LKILI  D       T+N+VY+EVFQ I
Sbjct: 2   LYVAVSRVKSKDGLKILISSDGTSTPGATKNIVYKEVFQKI 124


>BP046554 
          Length = 556

 Score = 38.1 bits (87), Expect = 0.006
 Identities = 26/45 (57%), Positives = 29/45 (63%)
 Frame = -1

Query: 48  KFKGMSVLGI*ELKIDLIFVLEFSR*SSII*CLI*GKARYLVLLM 92
           KFKG+  LGI*  K    FV  FS+*SSI   LI* K +Y VLLM
Sbjct: 205 KFKGLCNLGI*M*KTVQTFVFVFSK*SSIDSYLI*KKGKYSVLLM 71


>BP063650 
          Length = 497

 Score = 30.8 bits (68), Expect(2) = 0.22
 Identities = 13/31 (41%), Positives = 20/31 (63%)
 Frame = +1

Query: 602 QILPVILKGSRSEIISSSANSSYLWKHCKVM 632
           + L V+ KG   +II +  N+SYL  HC+V+
Sbjct: 58  KFLTVVYKGRMQDIIHAIVNASYL*DHCQVL 150



 Score = 20.8 bits (42), Expect(2) = 0.22
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +3

Query: 594 VVLGGDFRQI 603
           VVL GDFRQI
Sbjct: 33  VVLQGDFRQI 62


>TC17027 similar to UP|Q93XA5 (Q93XA5) Homeodomain leucine zipper protein
           HDZ1 (Fragment), partial (34%)
          Length = 854

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 15/37 (40%), Positives = 19/37 (50%)
 Frame = +1

Query: 737 IPGEETKYLSYDTPCRSDEDSEIDAEWFTSEFLNDLK 773
           IPG ++K LSYD  C    D  +D     S F  +LK
Sbjct: 4   IPGSDSKELSYDC-CFKSSDDGVDGTTTASLFAENLK 111


>TC9679 weakly similar to UP|Q8H1B5 (Q8H1B5) Hin1-like protein, partial
           (54%)
          Length = 710

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 11/36 (30%), Positives = 21/36 (57%)
 Frame = -3

Query: 166 WLMASVLNTFPKNIRTALPLMMMVQMLEMENRTKMK 201
           W   ++  T  + +RTA+P+MM    + ++ R KM+
Sbjct: 276 WNFTTLGRTMSQKMRTAMPMMMRAVKMSLKMRLKMQ 169


>TC9013 
          Length = 766

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 14/26 (53%), Positives = 16/26 (60%)
 Frame = +3

Query: 905 ILIVDDKGVVSNCTRNVVYEEVFQNI 930
           ILI D     SN T NVVY EVF+ +
Sbjct: 627 ILICDGDDSNSNSTSNVVYTEVFRTV 704


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.344    0.151    0.484 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,281,243
Number of Sequences: 28460
Number of extensions: 203277
Number of successful extensions: 1734
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1733
length of query: 930
length of database: 4,897,600
effective HSP length: 99
effective length of query: 831
effective length of database: 2,080,060
effective search space: 1728529860
effective search space used: 1728529860
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 60 (27.7 bits)