BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0318.14
(58 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC17539 weakly similar to UP|Q8S2W4 (Q8S2W4) Arabinogalactan-pep... 112 1e-26
TC12093 96 1e-21
TC12556 similar to UP|Q7VZL8 (Q7VZL8) Biotin carboxyl carrier pr... 84 4e-18
TC18210 similar to UP|O04342 (O04342) At2g30530 protein (At2g305... 32 0.019
CN825556 30 0.073
TC11316 similar to UP|BAC98267 (BAC98267) MKIAA1853 protein (Fra... 30 0.073
TC10967 30 0.095
TC13769 weakly similar to GB|AAM19768.1|20453045|AY094388 AT3g56... 30 0.095
TC15676 similar to GB|AAG24281.1|10880503|AF195894 arabinogalact... 28 0.28
TC14639 weakly similar to GB|AAM91068.1|22136564|AY129482 AT5g11... 28 0.47
TC9870 weakly similar to UP|NO16_MEDTR (P93328) Early nodulin 16... 28 0.47
TC9108 similar to GB|AAM19886.1|20453295|AY097370 At2g46330/F11C... 28 0.47
TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%) 27 0.81
TC9037 similar to GB|AAG24276.1|10880493|AF195889 fasciclin-like... 27 1.1
TC14295 similar to UP|O03990 (O03990) RAD23, isoform I, partial ... 27 1.1
AU089035 27 1.1
TC9197 weakly similar to UP|Q9FK16 (Q9FK16) Emb|CAB71094.1, part... 26 1.8
TC15308 similar to UP|Q41725 (Q41725) TED3, partial (16%) 25 2.4
TC14382 similar to UP|RSP4_CICAR (O65751) 40S ribosomal protein ... 25 2.4
BP067888 25 2.4
>TC17539 weakly similar to UP|Q8S2W4 (Q8S2W4) Arabinogalactan-peptide AGP23,
partial (84%)
Length = 283
Score = 112 bits (280), Expect = 1e-26
Identities = 58/58 (100%), Positives = 58/58 (100%)
Frame = +2
Query: 1 MDMKKVTCVVLIVAASMSAALATNEVPAPAPGPASGASATVVGSLVGASVLSFFALFH 58
MDMKKVTCVVLIVAASMSAALATNEVPAPAPGPASGASATVVGSLVGASVLSFFALFH
Sbjct: 86 MDMKKVTCVVLIVAASMSAALATNEVPAPAPGPASGASATVVGSLVGASVLSFFALFH 259
>TC12093
Length = 356
Score = 95.9 bits (237), Expect = 1e-21
Identities = 53/60 (88%), Positives = 53/60 (88%), Gaps = 2/60 (3%)
Frame = +1
Query: 1 MDMKKVTCVVLIVAASMSAALATNEVPAPAPGP--ASGASATVVGSLVGASVLSFFALFH 58
MDMKKVT VLIVAASMSA LA EVPAPAPGP ASGASATVVGSLVGASVLSFFALFH
Sbjct: 94 MDMKKVTFAVLIVAASMSATLAATEVPAPAPGPDAASGASATVVGSLVGASVLSFFALFH 273
>TC12556 similar to UP|Q7VZL8 (Q7VZL8) Biotin carboxyl carrier protein,
partial (10%)
Length = 706
Score = 84.3 bits (207), Expect = 4e-18
Identities = 48/59 (81%), Positives = 50/59 (84%), Gaps = 1/59 (1%)
Frame = -3
Query: 1 MDMKKVTCVVLIVAA-SMSAALATNEVPAPAPGPASGASATVVGSLVGASVLSFFALFH 58
MDMKK+TC VLIVAA SMSAALA E PAPAP S ASATVVGS+VGASVLSFFALFH
Sbjct: 359 MDMKKMTCAVLIVAAASMSAALAXTEAPAPAP---SSASATVVGSIVGASVLSFFALFH 192
>TC18210 similar to UP|O04342 (O04342) At2g30530 protein
(At2g30530/T6B20.12), partial (7%)
Length = 520
Score = 32.3 bits (72), Expect = 0.019
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Frame = +1
Query: 10 VLIVAASMSAALATNEVP--APAPGPASGASATVVGS--LVGAS-VLSFFA 55
+++V A S A + E P APAP P +GA+ +V+ S ++GAS VLS A
Sbjct: 100 IVLVVALFSVAASAQESPSSAPAPSPDAGAAGSVLVSAGMIGASLVLSVLA 252
>CN825556
Length = 655
Score = 30.4 bits (67), Expect = 0.073
Identities = 14/47 (29%), Positives = 25/47 (52%)
Frame = +3
Query: 7 TCVVLIVAASMSAALATNEVPAPAPGPASGASATVVGSLVGASVLSF 53
T A++ ++A A+ PAPAP PAS ++ + ++ LS+
Sbjct: 471 TATATATASAPASAPASAPAPAPAPAPASATASVPASTTTSSTTLSW 611
Score = 26.6 bits (57), Expect = 1.1
Identities = 16/44 (36%), Positives = 22/44 (49%), Gaps = 1/44 (2%)
Frame = +3
Query: 7 TCVVLIVAASMSAALATNEVPAPAPGPA-SGASATVVGSLVGAS 49
T A + + A A PAPAP PA + A+A+V S +S
Sbjct: 465 TATATATATASAPASAPASAPAPAPAPAPASATASVPASTTTSS 596
>TC11316 similar to UP|BAC98267 (BAC98267) MKIAA1853 protein (Fragment),
partial (5%)
Length = 448
Score = 30.4 bits (67), Expect = 0.073
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 5 KVTCVVLIVAASMSAALATNEVP--APAPGPASGASATVVGSLVGASVLSFFA 55
K +VL VA AA A + P APAP P +GA+ +V S + VLS A
Sbjct: 75 KAFAIVLAVALFSIAASAQDLSPSSAPAPSPDAGAAGSVAVSFGVSVVLSVLA 233
>TC10967
Length = 471
Score = 30.0 bits (66), Expect = 0.096
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Frame = +2
Query: 5 KVTCVVLIVAA-SMSAALATNEVPAPAPGPASGAS--ATVVGSLVGAS-VLSFFA 55
K +VL+VA S++A+ + APAP P +GA+ V ++GAS VLS A
Sbjct: 86 KAFAIVLVVALFSIAASAQESPSSAPAPSPDAGAAGYVPVSAGMIGASLVLSVLA 250
>TC13769 weakly similar to GB|AAM19768.1|20453045|AY094388
AT3g56200/F18O21_160 {Arabidopsis thaliana;}, partial
(20%)
Length = 438
Score = 30.0 bits (66), Expect = 0.096
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +2
Query: 14 AASMSAALATNEVPAPAPGPASGASATVVGSLVGASVLSFFAL 56
+A + L PA P SGA V S+VGA ++S AL
Sbjct: 50 SAGVHVPLLPGSKPAAPPASVSGAVFNVANSIVGAGIMSIPAL 178
>TC15676 similar to GB|AAG24281.1|10880503|AF195894 arabinogalactan protein
{Arabidopsis thaliana;} , partial (49%)
Length = 877
Score = 28.5 bits (62), Expect = 0.28
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +3
Query: 3 MKKVTCVVLIVAASMSAALATNEVPAPAPGPASGASATVVGSLVGASVLSFFAL 56
+K L+VA + AA + APAP P S A+ V A+ SF AL
Sbjct: 90 LKMNVLFTLVVAVLVMAASGVSAAEAPAPSPTSDATTL----FVPAAFASFVAL 239
>TC14639 weakly similar to GB|AAM91068.1|22136564|AY129482
AT5g11740/T22P22_130 {Arabidopsis thaliana;}, partial
(61%)
Length = 507
Score = 27.7 bits (60), Expect = 0.47
Identities = 19/46 (41%), Positives = 24/46 (51%), Gaps = 4/46 (8%)
Frame = +1
Query: 12 IVAASMSAALATNEVPAPAPGPASGASAT----VVGSLVGASVLSF 53
++AA +S A A APAP PAS ASA G L + L+F
Sbjct: 103 VLAAVISVAAAAE---APAPSPASPASAVSPSFAAGLLAAVAALAF 231
>TC9870 weakly similar to UP|NO16_MEDTR (P93328) Early nodulin 16 precursor
(N-16), partial (31%)
Length = 581
Score = 27.7 bits (60), Expect = 0.47
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Frame = +1
Query: 13 VAASMSAALATNEVPAPAPGPASGASATVVGS-----LVGASVLSFFALFH 58
++ S S A +++ P P+P PAS A++ GS + A V+ FF H
Sbjct: 259 LSPSPSPAPSSSSSPTPSPSPASNGVASISGSGFIMWMGVALVMLFFL*IH 411
>TC9108 similar to GB|AAM19886.1|20453295|AY097370 At2g46330/F11C10.2
{Arabidopsis thaliana;}, partial (60%)
Length = 669
Score = 27.7 bits (60), Expect = 0.47
Identities = 21/46 (45%), Positives = 24/46 (51%)
Frame = +3
Query: 11 LIVAASMSAALATNEVPAPAPGPASGASATVVGSLVGASVLSFFAL 56
LI A S+ AA+ + PAPAP P S SA G A VL AL
Sbjct: 141 LIFALSVPAAVNA-QTPAPAPAPTSDGSAVDQGV---AYVLMLLAL 266
>TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%)
Length = 1008
Score = 26.9 bits (58), Expect = 0.81
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 15 ASMSAALATNEVPAPAPGPASGA 37
+S S++ + PAPAPGP SGA
Sbjct: 412 SSSSSSSPFSSGPAPAPGPPSGA 480
>TC9037 similar to GB|AAG24276.1|10880493|AF195889 fasciclin-like
arabinogalactan protein FLA8 {Arabidopsis thaliana;} ,
partial (61%)
Length = 989
Score = 26.6 bits (57), Expect = 1.1
Identities = 16/38 (42%), Positives = 19/38 (49%)
Frame = +2
Query: 12 IVAASMSAALATNEVPAPAPGPASGASATVVGSLVGAS 49
+ A S S A A AP+P PASG S S + AS
Sbjct: 488 LFAKSPSPAPAPEPASAPSPAPASGPSPASAPSPLPAS 601
>TC14295 similar to UP|O03990 (O03990) RAD23, isoform I, partial (29%)
Length = 622
Score = 26.6 bits (57), Expect = 1.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 13 VAASMSAALATNEVPAPAPGPASGASATVVGSLVG 47
V A+ AA A P+PAP P S +A + G
Sbjct: 501 VTAAAPAAPAATPAPSPAPAPISSGTAVEGSDVYG 605
Score = 25.4 bits (54), Expect = 2.4
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 12 IVAASMSAALATNEVPAPAPGPASGASATVV 42
+ AA+ +A AT PAP+P PA +S T V
Sbjct: 501 VTAAAPAAPAAT---PAPSPAPAPISSGTAV 584
>AU089035
Length = 460
Score = 26.6 bits (57), Expect = 1.1
Identities = 20/46 (43%), Positives = 24/46 (51%)
Frame = +3
Query: 11 LIVAASMSAALATNEVPAPAPGPASGASATVVGSLVGASVLSFFAL 56
LI A ++ AA+ + PAPAP P S SA G A VL AL
Sbjct: 24 LIFALAVPAAVNA-QTPAPAPAPTSDGSAVDQGV---AYVLMLLAL 149
>TC9197 weakly similar to UP|Q9FK16 (Q9FK16) Emb|CAB71094.1, partial (57%)
Length = 483
Score = 25.8 bits (55), Expect = 1.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 6 VTCVVLIVAASMSAALATNEVPAPAPGPASGASA 39
+ +VL + + A A + V APAP P S +A
Sbjct: 155 ILSLVLFAISDLGGAHAFSPVSAPAPAPTSDGAA 256
>TC15308 similar to UP|Q41725 (Q41725) TED3, partial (16%)
Length = 1103
Score = 25.4 bits (54), Expect = 2.4
Identities = 15/32 (46%), Positives = 17/32 (52%), Gaps = 6/32 (18%)
Frame = +3
Query: 21 LATNEVPAPAPGPAS------GASATVVGSLV 46
LA E PA APGPAS SA +GS +
Sbjct: 159 LAKAESPAQAPGPASALAPAPAPSAQAIGSTI 254
>TC14382 similar to UP|RSP4_CICAR (O65751) 40S ribosomal protein SA (p40),
partial (34%)
Length = 739
Score = 25.4 bits (54), Expect = 2.4
Identities = 12/29 (41%), Positives = 18/29 (61%)
Frame = -1
Query: 22 ATNEVPAPAPGPASGASATVVGSLVGASV 50
AT +PAP ASGA+A + +GA++
Sbjct: 325 ATASPQSPAPATASGAAAQPGAAAIGAAL 239
>BP067888
Length = 534
Score = 25.4 bits (54), Expect = 2.4
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 18 SAALATNEVPAPAPG-PASGASATVVGS 44
SAA AT P P+PG PAS SAT + S
Sbjct: 229 SAATATPTPPLPSPGTPASTWSATSLRS 312
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.128 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 822,263
Number of Sequences: 28460
Number of extensions: 7689
Number of successful extensions: 181
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of query: 58
length of database: 4,897,600
effective HSP length: 34
effective length of query: 24
effective length of database: 3,929,960
effective search space: 94319040
effective search space used: 94319040
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)
Lotus: description of TM0318.14