BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0316.6
(1449 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CB826728 96 2e-32
AV780705 114 1e-25
AV426428 110 2e-24
TC19704 weakly similar to UP|Q9SZ87 (Q9SZ87) RNA-directed DNA po... 107 2e-23
BP060613 97 1e-20
TC12829 76 3e-20
AV780250 96 5e-20
AV767121 95 7e-20
AU251850 92 4e-19
AV411435 87 2e-17
AV780221 78 1e-14
CN825238 75 1e-13
TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, p... 74 2e-13
CB827358 50 4e-12
TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%) 61 1e-09
CN825682 59 5e-09
AV428268 53 3e-07
BP085058 53 4e-07
AV768875 49 6e-06
BP065085 44 8e-05
>CB826728
Length = 509
Score = 95.5 bits (236), Expect(2) = 2e-32
Identities = 43/99 (43%), Positives = 61/99 (61%)
Frame = +1
Query: 1218 FWPWTVNGMYSSKSGYQLLQSLTQEGVSSSSSGGNLHPSLWKKFWRSEALPRCKELAWRA 1277
FWP + +G YSSKSGY+ ++ + + S+S + +WK W + +LPRCKE+ WRA
Sbjct: 211 FWPGSSDGWYSSKSGYEFIRLENKSLLPSTSPAAAVPSLIWKTVWSASSLPRCKEVMWRA 390
Query: 1278 IKGILPVRVSLRIRGMDVDDRCPLCGCEEETNDHVFVCC 1316
G LPVR +L+ RG+DVD P G E+E HV + C
Sbjct: 391 CAGYLPVRSALKRRGLDVDPSSPWSGLEDEAEVHVLLTC 507
Score = 62.4 bits (150), Expect(2) = 2e-32
Identities = 32/71 (45%), Positives = 44/71 (61%)
Frame = +3
Query: 1148 VWRDNWLPGGAPLLFREDLVAEWGIHLVSDLIVQPHGGWNVPLLEMVFAPATVQRILAVP 1207
+ D WLP APL++ EDL + + V+DLI +G WN L+ MVF+P+T LAV
Sbjct: 6 ILHDAWLPNSAPLVYCEDLFVDLQLKKVADLI--ENGRWNENLVSMVFSPSTTAVFLAVS 179
Query: 1208 VPLFRGDDCLF 1218
+PL +DCLF
Sbjct: 180 LPLQSYEDCLF 212
>AV780705
Length = 524
Score = 114 bits (285), Expect = 1e-25
Identities = 60/156 (38%), Positives = 90/156 (57%), Gaps = 8/156 (5%)
Frame = -2
Query: 964 YLGLPTIIGKSKSQIFNFVKDRVWKKLKGWKEKFLSRAGREVLIKSVAQAIPSYVMSCFV 1023
YLGLP I G++KS +++++V +KL+GWKE L++AG+EVLIK++ QAIPSY M+
Sbjct: 484 YLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKETLLNQAGKEVLIKAIIQAIPSYAMTIVH 305
Query: 1024 LPDSLCAELDGMIAKFFW----AGDASRRGIHWVKWSTLCRHKHDGGLGFRDFKAFNLSL 1079
P + C L ++A F+W G G K K GG+GFRD + NL+
Sbjct: 304 FPKTFCNSLYALVADFWWKSQGEGAVEYTGAVGTK*PL---SKEKGGVGFRDLRTQNLAF 134
Query: 1080 VGKNWWRIYSQPDTLLAQIFKAAYFPRTD----LWD 1111
+ + WR+ + P+ L ++ K+ YFP LWD
Sbjct: 133 LARQAWRVLTNPEALWVRVMKSLYFPTPALCLLLWD 26
>AV426428
Length = 413
Score = 110 bits (275), Expect = 2e-24
Identities = 56/137 (40%), Positives = 75/137 (53%)
Frame = +3
Query: 1244 VSSSSSGGNLHPSLWKKFWRSEALPRCKELAWRAIKGILPVRVSLRIRGMDVDDRCPLCG 1303
V+SSS +L +K W++EALPRC E WRA G+LPV+ SL RG+ D CP C
Sbjct: 3 VASSSQVPSLPSVD*RKLWKAEALPRCCETGWRACLGVLPVKASLHARGLAEDPICPRCL 182
Query: 1304 CEEETNDHVFVCCPAVQPLWFASPLAIRVASFSSLHELAVAFLSTAEEDFIPVFQAWLYT 1363
+T DH + CP V P+WFAS L R+ +HE F+ A+ D F LY
Sbjct: 183 AAPKTADHAVLFCP*VHPIWFASSLGFRLNQECKMHEFVADFMQVAD*DTCGEFLTILYA 362
Query: 1364 LWEARNALIFNNKPVSM 1380
+W A+N L F V++
Sbjct: 363 IWTAQNELCFRYTTVTL 413
>TC19704 weakly similar to UP|Q9SZ87 (Q9SZ87) RNA-directed DNA
polymerase-like protein, partial (3%)
Length = 530
Score = 107 bits (266), Expect = 2e-23
Identities = 57/167 (34%), Positives = 91/167 (54%), Gaps = 6/167 (3%)
Frame = -3
Query: 646 ECKELVTEAWGEGS------AMGLTAKLSSLGSSLKDWGREKFGDIPKKISDTKALLQKL 699
ECKE + +AW S L+ K ++ +L +W + F K+I++ K L+ L
Sbjct: 528 ECKETIKKAWDNTSETASSHCSNLSGKTTNTKLALTEWHHQNFSRADKEIAELKNQLEHL 349
Query: 700 QWQTQSEQVVRETKEAEIALDTLLMQQEIWWSQRSRANWLRFGDKNTNFFHQKATQRRKR 759
Q + S + +E K+ ++ L L Q+E++WSQRSR WL+ GDKNT FFH QRR+R
Sbjct: 348 QNYSNSGEDWQEIKQRKMRLKDLWRQEELFWSQRSRIKWLKSGDKNTKFFHASTVQRRER 169
Query: 760 NMIEKIRDDGGREFVDDPNIGRVLGDYFTSLFTSSSPSGMQDAANLV 806
N IE+I+D G I R + D++ ++ S++ + + N V
Sbjct: 168 NRIERIKDMQGTWVRSQLAINRDVPDFYPDIYKSTNRQNITECLNAV 28
>BP060613
Length = 378
Score = 97.4 bits (241), Expect = 1e-20
Identities = 44/107 (41%), Positives = 59/107 (55%)
Frame = +1
Query: 1041 WAGDASRRGIHWVKWSTLCRHKHDGGLGFRDFKAFNLSLVGKNWWRIYSQPDTLLAQIFK 1100
W RG+HW KW L K +GGLGF+DF+ N +L+ K WRI PD L QI K
Sbjct: 46 WWSSKGTRGVHWRKWDLLTELKDEGGLGFKDFEIQNQALLAKQAWRILHNPDALWVQILK 225
Query: 1101 AAYFPRTDLWDAKKGYRPSYAWASILRSKLIFDKGARWRIGDGKKVQ 1147
A YFP D K S+ W+S+L + + K +W++G G+ VQ
Sbjct: 226 ALYFPHHDFLQTTKRTGASWVWSSLLHGRELLLKQGQWQLGSGETVQ 366
>TC12829
Length = 448
Score = 76.3 bits (186), Expect(2) = 3e-20
Identities = 32/46 (69%), Positives = 42/46 (90%)
Frame = +3
Query: 995 EKFLSRAGREVLIKSVAQAIPSYVMSCFVLPDSLCAELDGMIAKFF 1040
EKFL RAGREVLIKSV +AIP+Y+MSCF LPDS+C++++GM+ KF+
Sbjct: 252 EKFLYRAGREVLIKSVTKAIPTYIMSCFALPDSICSQIEGMVGKFY 389
Score = 40.4 bits (93), Expect(2) = 3e-20
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 1032 LDGMIAKFFWAGDASRRGIHWVKWSTLC 1059
L + F W+GD SRR IHW+ W LC
Sbjct: 364 LKAWLVSFIWSGDVSRRSIHWLGWKKLC 447
>AV780250
Length = 494
Score = 95.5 bits (236), Expect = 5e-20
Identities = 49/112 (43%), Positives = 65/112 (57%)
Frame = +3
Query: 1214 DDCLFWPWTVNGMYSSKSGYQLLQSLTQEGVSSSSSGGNLHPSLWKKFWRSEALPRCKEL 1273
+D L WP T NG Y+SKSGY ++++ + SSS+ + P +WK + LPRC+EL
Sbjct: 171 NDVLAWPHTSNGEYTSKSGYAVVRNKVVHALPSSSTALQVSPVVWK----APTLPRCREL 338
Query: 1274 AWRAIKGILPVRVSLRIRGMDVDDRCPLCGCEEETNDHVFVCCPAVQPLWFA 1325
RA ILP R +LR RGMDVD+ CP C E+ V + P V WFA
Sbjct: 339 IGRAFLKILPTRSALRARGMDVDELCPSCETHRESPAQVLLFVPVVSKWWFA 494
>AV767121
Length = 525
Score = 95.1 bits (235), Expect = 7e-20
Identities = 55/173 (31%), Positives = 86/173 (48%), Gaps = 5/173 (2%)
Frame = +2
Query: 990 LKGWKEKFLSRAGREVLIKSVAQAIPSYVMSCFVLPDSLCAELDGMIAKFFWAGDASRRG 1049
L WK+K +S GR LI+SV A+P + +S F LP + ++ F W G +
Sbjct: 2 LSKWKQKTVSFGGRIFLIQSVLTALPLFFLSFFKLPIGVGKSCVRLMRNFLWGGSENENK 181
Query: 1050 IHWVKWSTLCRHKHDGGLGFRDFKAFNLSLVGKNWWRIYSQPDTLLAQIFKAA---YFPR 1106
I VKW+ +C+ K GGLG +D FN +L+GK WR ++PD+L ++ +A Y
Sbjct: 182 IA*VKWTDVCKPKELGGLGIKDLFTFNKALLGK*RWRYLTEPDSLWRRVIEAQPDHYSCG 361
Query: 1107 TDLWDAKKGYRPSYA--WASILRSKLIFDKGARWRIGDGKKVQVWRDNWLPGG 1157
+ W+ P A W F G + +G+G + + W ++WL G
Sbjct: 362 SSWWNDILSLCPEDADGW---------FSSGLKKLVGEGDQTKFWSEDWLGSG 493
>AU251850
Length = 343
Score = 92.4 bits (228), Expect = 4e-19
Identities = 46/103 (44%), Positives = 64/103 (61%)
Frame = +2
Query: 381 PSSMRLLMWNCRGLGNPQAVLALKGLIHSKAPDVVFAMETKMYTSEVLKNRGMGGLPNVF 440
P++M+LL WNCRGLG+P+AV AL+ L+ + P +VF METK+ E K GL N
Sbjct: 29 PTAMKLLSWNCRGLGSPRAVEALQRLVRKEIPQLVFLMETKLKKFETEKISLGFGLSNCL 208
Query: 441 PVQCAGSGRSRAGGLFLMWSSEVEVDILSASLNHIAFSLVHPD 483
V C G + R GGL + W++ V+V ++S S NHI + V D
Sbjct: 209 IVDCVGDEKERKGGLAMWWNASVDVSLVSFSGNHIVVACVEDD 337
>AV411435
Length = 426
Score = 87.0 bits (214), Expect = 2e-17
Identities = 44/128 (34%), Positives = 70/128 (54%), Gaps = 2/128 (1%)
Frame = +3
Query: 1203 ILAVPVPLFRGDDCLFWPWTVNGMYSSKSGYQLLQSLTQEGVSSSSSGGNLHPS--LWKK 1260
I+ P + +D LFWP+ +G YS KSGY+ +++ TQ +S+ +S + HPS LW
Sbjct: 3 IMQTPFSITGSEDRLFWPFIPSGEYSVKSGYRAVKA-TQFNLSNLASSSS-HPSSFLWHT 176
Query: 1261 FWRSEALPRCKELAWRAIKGILPVRVSLRIRGMDVDDRCPLCGCEEETNDHVFVCCPAVQ 1320
W ++ + + WRA +PV+ +L+ R M DD CP+C E +H + C +
Sbjct: 177 IWGAQVPKKVRSFLWRAANNAIPVKRNLKRRNMGRDDFCPICNKGPEDINHALLACEWTR 356
Query: 1321 PLWFASPL 1328
+WF PL
Sbjct: 357 AVWFGCPL 380
>AV780221
Length = 461
Score = 77.8 bits (190), Expect = 1e-14
Identities = 53/159 (33%), Positives = 75/159 (46%), Gaps = 10/159 (6%)
Frame = +3
Query: 1006 LIKSVAQAIPSYVMSCFVLPDS-LCAELDGMIAKFFWAGDASRRGIHWVKWSTLCRHKHD 1064
LI+SV A+P + + F LP ++ FF + I WVKWST+CR K +
Sbjct: 9 LIRSVLIALPLFHLPFFKLPTGGFYTNVNN**DPFFGREVEGGKKIAWVKWSTVCRPKDE 188
Query: 1065 GGLGFRDFKAFNLSLVGKNWWRIYSQPDTLLAQIFKAAYFPRTDLWDAKKGYRPSYA--W 1122
GGLG ++ FN +L+GK WR+ + D L ++ Y K P A W
Sbjct: 189 GGLGVQNLGLFNKALLGKWRWRMLKERDGLWYKVLLIKY----------KNAIPQSASSW 338
Query: 1123 ASILRSKLIFDKGARW-------RIGDGKKVQVWRDNWL 1154
+ L S D G W RIG+G +V+ W +NWL
Sbjct: 339 WNDLHSTCFEDGGGGWMQRGLCRRIGEGTEVKFWNENWL 455
>CN825238
Length = 692
Score = 74.7 bits (182), Expect = 1e-13
Identities = 38/117 (32%), Positives = 62/117 (52%)
Frame = +3
Query: 1186 WNVPLLEMVFAPATVQRILAVPVPLFRGDDCLFWPWTVNGMYSSKSGYQLLQSLTQEGVS 1245
WNV L++ +F T I ++P+ + W W+ NG +S +S Y +Q + +
Sbjct: 321 WNVQLIDQLFPKETAAVIKSIPLGWRTTRNSCLWRWSRNGAFSVRSAYYNIQVAKE--MQ 494
Query: 1246 SSSSGGNLHPSLWKKFWRSEALPRCKELAWRAIKGILPVRVSLRIRGMDVDDRCPLC 1302
+SSS + P WKK WR+ + K A+R + I+P R +L+ RG+ V + CP C
Sbjct: 495 TSSSAASSFP--WKKLWRTPVPNKMKHFAYRVARNIIPCRENLQRRGIAVQNECPTC 659
>TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, partial
(14%)
Length = 592
Score = 73.6 bits (179), Expect = 2e-13
Identities = 44/141 (31%), Positives = 70/141 (49%)
Frame = -3
Query: 739 LRFGDKNTNFFHQKATQRRKRNMIEKIRDDGGREFVDDPNIGRVLGDYFTSLFTSSSPSG 798
L+ GD NT FFH QRR N I KI+D G + +YF+ +++SS
Sbjct: 578 LK*GDHNTRFFHASTIQRRDFNRILKIKDAHGIWVEGQKKVNEAAVNYFSDIYSSSPLQY 399
Query: 799 MQDAANLVANRVTAAHLEVLSEPFTKLDVEEALFQMHPTKAPGLDGFPALFYQRHWDIIG 858
+++ + VT L + +++EA+F M KAPG+DG LFYQ++ +I+
Sbjct: 398 LRECLAPIPKLVTDRLNHKLCAQVSTDEIKEAVFSMGDLKAPGMDGINGLFYQQNREIVK 219
Query: 859 DDVAHFCLQVLNGTASPGSLH 879
+DV + L + P L+
Sbjct: 218 NDVNNAILDFFDHGELPVELN 156
>CB827358
Length = 453
Score = 50.1 bits (118), Expect(2) = 4e-12
Identities = 30/92 (32%), Positives = 43/92 (46%)
Frame = +2
Query: 1338 LHELAVAFLSTAEEDFIPVFQAWLYTLWEARNALIFNNKPVSMESLLQRLSTLLEMPTLV 1397
L+ + FL A+ D + Q LWEA N LIF P E+ +QR +++ ++
Sbjct: 116 LNYFLLQFLVEADSDVVASCQMASCALWEAHNKLIFQEVPFRCEAAIQRATSMSQVDVST 295
Query: 1398 YAPVGRAQRDMASSWSRPQRGTTKVNVDASFQ 1429
P A W RP RG KVN D S++
Sbjct: 296 VDPSANGPVHDA-IWRRPPRGVFKVNFDGSWK 388
Score = 39.3 bits (90), Expect(2) = 4e-12
Identities = 23/52 (44%), Positives = 31/52 (59%)
Frame = +3
Query: 1264 SEALPRCKELAWRAIKGILPVRVSLRIRGMDVDDRCPLCGCEEETNDHVFVC 1315
++ALPRCK+LAW + R SL +G++ D CPLCG E T +F C
Sbjct: 3 TKALPRCKDLAW-----CVCCR*SLWRKGVNSDPSCPLCGNEF*T---IFYC 134
>TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%)
Length = 912
Score = 60.8 bits (146), Expect = 1e-09
Identities = 40/121 (33%), Positives = 66/121 (54%)
Frame = -3
Query: 890 ISHLLFADDNILFARATINEAACISDILSTYEKASGQVINLDKSMLSVSRNVLDTSFNEL 949
ISHL FAD+ ++F+ + A I+++L ++ SG N KS + + V +T+ N++
Sbjct: 373 ISHLCFADNLMVFSNGYLESIAIINNVLHIFQHLSGLTPNPAKSEVFIL--VKETTKNQI 200
Query: 950 KQLLGVKAVESFDKYLGLPTIIGKSKSQIFNFVKDRVWKKLKGWKEKFLSRAGREVLIKS 1009
+LG K + + LG+P + K K+ + DR KL+ W + LS AGR LI S
Sbjct: 199 TNMLGYKEGKLPVR*LGVPQLTTKLKASDCKVLVDRKPSKLQHWTGRSLSYAGRLQLINS 20
Query: 1010 V 1010
+
Sbjct: 19 I 17
>CN825682
Length = 626
Score = 58.9 bits (141), Expect = 5e-09
Identities = 32/95 (33%), Positives = 44/95 (45%)
Frame = -3
Query: 521 WLCFGDFNDILSPTDKLGGDPPNYAHMQEVMATCSTCDLHDVGVSGYRFTWSNKRAVPGT 580
W C+GDFN+IL +K G + +Q +L D+ + G RFTW +
Sbjct: 300 WTCYGDFNEILHHQEKEGARDQDPTRIQVFRDFLDGANLMDLELKGCRFTWLSNLRNGLV 121
Query: 581 VEERLDYALANDAWDALWPVTEVTHLPRYRSDHNP 615
+ERLD L N W +P LP SDH+P
Sbjct: 120 TKERLDRVLVNWTWRLDYPNATAMALPIISSDHSP 16
>AV428268
Length = 429
Score = 53.1 bits (126), Expect = 3e-07
Identities = 29/97 (29%), Positives = 47/97 (47%)
Frame = +3
Query: 1227 YSSKSGYQLLQSLTQEGVSSSSSGGNLHPSLWKKFWRSEALPRCKELAWRAIKGILPVRV 1286
YS KS Y L +++ N+ LW S A+ L+W+ + + +V
Sbjct: 6 YSVKSAYDFLHGC------ANAQWDNIFKLLWSVKVPSNAIA----LSWKVLINRVQTKV 155
Query: 1287 SLRIRGMDVDDRCPLCGCEEETNDHVFVCCPAVQPLW 1323
+L RG+ + + CPLC +EE+ DH+ CP V +W
Sbjct: 156 NLNRRGVVISNVCPLCSLDEESTDHLLFSCPIV*RIW 266
>BP085058
Length = 452
Score = 52.8 bits (125), Expect = 4e-07
Identities = 36/123 (29%), Positives = 54/123 (43%)
Frame = +2
Query: 947 NELKQLLGVKAVESFDKYLGLPTIIGKSKSQIFNFVKDRVWKKLKGWKEKFLSRAGREVL 1006
+ + + + ++ KY+ P G + F F DRV +L K L++ R L
Sbjct: 86 DRMVSITSIPFTDNIGKYMSFPIHQGHV*KEDFVFTLDRVISRLAC*KAYLLNKPARLTL 265
Query: 1007 IKSVAQAIPSYVMSCFVLPDSLCAELDGMIAKFFWAGDASRRGIHWVKWSTLCRHKHDGG 1066
K V AI YVM LP S+C ++ ++ F W + GI V W T+ K G
Sbjct: 266 AKPVLSAISMYVMQLNWLPQSICDQICTVVRHFVW---ENVNGIPLVAWETIQSRKSMVG 436
Query: 1067 LGF 1069
L F
Sbjct: 437 LIF 445
>AV768875
Length = 232
Score = 48.9 bits (115), Expect = 6e-06
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +1
Query: 519 VPWLCFGDFNDILSPTDKLGGD-PPNYAHMQEVMATCSTCDLHDVGVSGYRFTWSNKR 575
+PWL GD N+IL P+ GG+ PN A Q C+L D+G+ G +FTW KR
Sbjct: 52 IPWLLIGDMNEILFPSQVRGGEFHPNRA--QRFATVLDDCNLIDLGMVGGKFTWFRKR 219
>BP065085
Length = 454
Score = 44.3 bits (103), Expect(2) = 8e-05
Identities = 21/53 (39%), Positives = 31/53 (57%)
Frame = -1
Query: 1186 WNVPLLEMVFAPATVQRILAVPVPLFRGDDCLFWPWTVNGMYSSKSGYQLLQS 1238
W+ ++ +F PAT +ILA+ +P+ R D WP N +YSSKS Y + S
Sbjct: 448 WDGXVISHIFCPATTGQILAILLPIPRLADEFHWPHNSNSVYSSKSRYHIFIS 290
Score = 20.0 bits (40), Expect(2) = 8e-05
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = -3
Query: 1244 VSSSSSGGNLHPSLWKK 1260
++SSSSG + + WK+
Sbjct: 275 LASSSSGASFPAAAWKR 225
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.334 0.146 0.511
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,184,553
Number of Sequences: 28460
Number of extensions: 492450
Number of successful extensions: 4035
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 3860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3994
length of query: 1449
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1347
effective length of database: 1,994,680
effective search space: 2686833960
effective search space used: 2686833960
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0316.6