BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0316.4
(613 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC11583 similar to UP|Q9FNX5 (Q9FNX5) Dynamin-like protein DLP2 ... 454 e-128
TC11027 homologue to UP|Q39828 (Q39828) SDL5A, partial (44%) 384 e-107
TC10389 homologue to UP|Q39821 (Q39821) SDL12A, partial (37%) 354 2e-98
TC12933 homologue to UP|Q39821 (Q39821) SDL12A, partial (33%) 318 2e-87
BP065711 212 1e-55
TC15399 homologue to UP|Q39828 (Q39828) SDL5A, partial (28%) 198 2e-51
AV408334 187 6e-48
AV420767 155 1e-38
BP058190 151 3e-37
TC9419 similar to UP|Q8S3C8 (Q8S3C8) Dynamin-like protein C, par... 144 5e-35
AV427660 107 7e-24
TC9453 similar to UP|Q39821 (Q39821) SDL12A, partial (12%) 104 4e-23
TC13644 similar to UP|Q9FNX5 (Q9FNX5) Dynamin-like protein DLP2 ... 92 3e-19
TC8750 weakly similar to UP|Q39821 (Q39821) SDL12A, partial (10%) 65 4e-11
AV770241 60 1e-09
BP058074 57 7e-09
BP031425 50 1e-06
TC13228 homologue to UP|Q9LNN8 (Q9LNN8) F8L10.1 protein, partial... 46 2e-05
TC18286 similar to UP|Q9LVV0 (Q9LVV0) Emb|CAB82814.1, partial (4%) 30 0.87
TC19197 similar to UP|Q9LV51 (Q9LV51) Genomic DNA, chromosome 3,... 29 2.5
>TC11583 similar to UP|Q9FNX5 (Q9FNX5) Dynamin-like protein DLP2
(AT3g60190/T2O9_170), partial (36%)
Length = 967
Score = 454 bits (1168), Expect = e-128
Identities = 232/232 (100%), Positives = 232/232 (100%)
Frame = +1
Query: 382 RHLSLQNVRKVVSEADGYQPHLIAPEQGYRRLIDSALSYFRGPAEASVDAVNFVLKELVR 441
RHLSLQNVRKVVSEADGYQPHLIAPEQGYRRLIDSALSYFRGPAEASVDAVNFVLKELVR
Sbjct: 1 RHLSLQNVRKVVSEADGYQPHLIAPEQGYRRLIDSALSYFRGPAEASVDAVNFVLKELVR 180
Query: 442 KSIAETKELKRFPTFQAALATAANEALERFREESKKTTLRLVDMESSYLTVDFFRRLPQE 501
KSIAETKELKRFPTFQAALATAANEALERFREESKKTTLRLVDMESSYLTVDFFRRLPQE
Sbjct: 181 KSIAETKELKRFPTFQAALATAANEALERFREESKKTTLRLVDMESSYLTVDFFRRLPQE 360
Query: 502 VEKAGGPATPNVDRYAEGHFRRIASNVSSYIGLVADTLRNTIPKAVVFCQVRQAKQSLLN 561
VEKAGGPATPNVDRYAEGHFRRIASNVSSYIGLVADTLRNTIPKAVVFCQVRQAKQSLLN
Sbjct: 361 VEKAGGPATPNVDRYAEGHFRRIASNVSSYIGLVADTLRNTIPKAVVFCQVRQAKQSLLN 540
Query: 562 HFYTQIGKKEGKQLSEMLDEDPALMERRQQCAKRLELYKAARDEIDSVSWVR 613
HFYTQIGKKEGKQLSEMLDEDPALMERRQQCAKRLELYKAARDEIDSVSWVR
Sbjct: 541 HFYTQIGKKEGKQLSEMLDEDPALMERRQQCAKRLELYKAARDEIDSVSWVR 696
>TC11027 homologue to UP|Q39828 (Q39828) SDL5A, partial (44%)
Length = 826
Score = 384 bits (985), Expect = e-107
Identities = 177/269 (65%), Positives = 239/269 (88%)
Frame = +1
Query: 206 GERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINKNVDMIIARRKER 265
GERT GVLTK+DLMDKGT+A+D+LEGR+Y+L+ PW+G+VNRSQADINKNVDMI ARR ER
Sbjct: 19 GERTIGVLTKIDLMDKGTDAVDMLEGRAYKLKFPWIGVVNRSQADINKNVDMIAARRSER 198
Query: 266 EYFANSPDYGHLANKMGSEYLAKLLSQHLESVIRARIPSITSLINKSLEELESEMDHLGR 325
+YF+N+P+Y HLA++MGSE+LAK+LS+HLE+VI+++IP I SLINK++ ELE+E+ LG+
Sbjct: 199 DYFSNTPEYRHLAHRMGSEHLAKMLSKHLETVIQSKIPGIQSLINKTIAELEAELSRLGK 378
Query: 326 PIALDAGAQLYTILELCRAFERIFKEHLDGGRPGGDRIYHVFDNQLPAALRKLPFDRHLS 385
PIA + G +LY I+E+CR+F++IFK+HLDG RPGGD+IY+VFDNQLPAAL++L FD+ LS
Sbjct: 379 PIAAEDGGKLYAIMEICRSFDQIFKDHLDGVRPGGDKIYNVFDNQLPAALKRLQFDKQLS 558
Query: 386 LQNVRKVVSEADGYQPHLIAPEQGYRRLIDSALSYFRGPAEASVDAVNFVLKELVRKSIA 445
++N+RK+++EADGYQPHLIAPEQGYRRLI+S L+ RGPAEA+VD V+ +LK+LV K+I+
Sbjct: 559 MENIRKLITEADGYQPHLIAPEQGYRRLIESTLTTIRGPAEAAVDTVHSLLKDLVHKAIS 738
Query: 446 ETKELKRFPTFQAALATAANEALERFREE 474
ET ELK++P +A + +AA ++L+R REE
Sbjct: 739 ETLELKQYPGLRAEVGSAAIDSLDRMREE 825
>TC10389 homologue to UP|Q39821 (Q39821) SDL12A, partial (37%)
Length = 1008
Score = 354 bits (909), Expect = 2e-98
Identities = 173/228 (75%), Positives = 205/228 (89%)
Frame = +1
Query: 1 MESLIGLVNRIQRACTVLGDHGAAADGNSFSSLWEALPTVAVVGGQSSGKSSVLESIVGR 60
ME+LI LVN+IQRACT LGDHG A + +LW++LP +AVVGGQSSGKSSVLES+VG+
Sbjct: 88 MENLISLVNKIQRACTALGDHGEAT---ALPTLWDSLPAIAVVGGQSSGKSSVLESVVGK 258
Query: 61 DFLPRGSGIVTRRPLVLQLHKLETGSQEYAEFLHMPRRKFTDFSLVRQEIQDETDRVTGK 120
DFLPRGSGIVTRRPLVLQL K+E GS+EY EFLH+P++KF DF+ VR+EIQDETDR TG+
Sbjct: 259 DFLPRGSGIVTRRPLVLQLQKIEEGSREYGEFLHLPKKKFYDFAAVRKEIQDETDRETGR 438
Query: 121 TKQISPIPIHLSIYSPNVVNLTLVDLPGLTKVAVEGQPESIVQEIETMVRTYVEKPNSII 180
++ IS +PIHLSIYSPNVVNLTL+DLPGLTKVAVEGQP+SIV +IE MVR+Y+EKPN II
Sbjct: 439 SRMISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVHDIEDMVRSYIEKPNCII 618
Query: 181 LAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALDV 228
LAI+PANQD+ATSDAIK++REVDP GERT GVLTK+DLMDKGT+A+DV
Sbjct: 619 LAITPANQDLATSDAIKISREVDPNGERTIGVLTKIDLMDKGTDAVDV 762
>TC12933 homologue to UP|Q39821 (Q39821) SDL12A, partial (33%)
Length = 603
Score = 318 bits (815), Expect = 2e-87
Identities = 159/205 (77%), Positives = 186/205 (90%)
Frame = +1
Query: 5 IGLVNRIQRACTVLGDHGAAADGNSFSSLWEALPTVAVVGGQSSGKSSVLESIVGRDFLP 64
I LVN+IQRACT LGDHG + ++ +LW+ALP++AVVGGQSSGKSSVLESIVG+DFLP
Sbjct: 1 IQLVNKIQRACTALGDHG---EESALPTLWDALPSIAVVGGQSSGKSSVLESIVGKDFLP 171
Query: 65 RGSGIVTRRPLVLQLHKLETGSQEYAEFLHMPRRKFTDFSLVRQEIQDETDRVTGKTKQI 124
RGSGIVTRRPLVLQLHK++ S+EYAEF+H+PR++FTDF+ VRQEI DETDR TG++K I
Sbjct: 172 RGSGIVTRRPLVLQLHKIDD-SREYAEFMHLPRKRFTDFAAVRQEIADETDRETGRSKGI 348
Query: 125 SPIPIHLSIYSPNVVNLTLVDLPGLTKVAVEGQPESIVQEIETMVRTYVEKPNSIILAIS 184
S +PIHLSIYSPNVVNLTLVDLPGLTKVAVEGQP+SIVQ+IE MVR ++EKPN IILAIS
Sbjct: 349 SSVPIHLSIYSPNVVNLTLVDLPGLTKVAVEGQPDSIVQDIENMVRAFIEKPNCIILAIS 528
Query: 185 PANQDIATSDAIKLAREVDPTGERT 209
PANQD+ATSDAIK++REVDP GERT
Sbjct: 529 PANQDLATSDAIKISREVDPKGERT 603
>BP065711
Length = 524
Score = 212 bits (540), Expect = 1e-55
Identities = 103/137 (75%), Positives = 121/137 (88%)
Frame = +3
Query: 1 MESLIGLVNRIQRACTVLGDHGAAADGNSFSSLWEALPTVAVVGGQSSGKSSVLESIVGR 60
ME+LI LVN+IQRACT LGDHG A ++ +LW++LP +AVVGGQSSGKSSVLES+VG+
Sbjct: 120 MENLISLVNKIQRACTALGDHGEEA--SALPTLWDSLPAIAVVGGQSSGKSSVLESVVGK 293
Query: 61 DFLPRGSGIVTRRPLVLQLHKLETGSQEYAEFLHMPRRKFTDFSLVRQEIQDETDRVTGK 120
DFLPRGSGIVTRRPLVLQLHK+E GS+EY EFLH+PR+KF DF VR+EIQDETDR TG+
Sbjct: 294 DFLPRGSGIVTRRPLVLQLHKIEEGSREYGEFLHLPRKKFYDFVAVRKEIQDETDRETGR 473
Query: 121 TKQISPIPIHLSIYSPN 137
+KQIS +PIHLSIYSPN
Sbjct: 474 SKQISSVPIHLSIYSPN 524
>TC15399 homologue to UP|Q39828 (Q39828) SDL5A, partial (28%)
Length = 801
Score = 198 bits (504), Expect = 2e-51
Identities = 92/168 (54%), Positives = 134/168 (79%)
Frame = +3
Query: 444 IAETKELKRFPTFQAALATAANEALERFREESKKTTLRLVDMESSYLTVDFFRRLPQEVE 503
++ET +LK++P +A + AA ++LE+ R+ESKK TL+LVDME YLTVDFFR+LPQ+V+
Sbjct: 3 VSETLDLKQYPGLRAEVGAAAIDSLEKMRDESKKATLQLVDMEYGYLTVDFFRKLPQDVD 182
Query: 504 KAGGPATPNVDRYAEGHFRRIASNVSSYIGLVADTLRNTIPKAVVFCQVRQAKQSLLNHF 563
K G P DRY + + RRI + V SY+ +V TLR+TIPK++V+CQVR+AK++LL++F
Sbjct: 183 KGGNPTHSIFDRYNDSYLRRIGTTVLSYVNMVCATLRHTIPKSIVYCQVREAKRTLLDYF 362
Query: 564 YTQIGKKEGKQLSEMLDEDPALMERRQQCAKRLELYKAARDEIDSVSW 611
+T++GK + K+LS +L+EDPA+MERR AKRLELY++A+ EID+V+W
Sbjct: 363 FTELGKMDMKRLSSLLNEDPAIMERRSGLAKRLELYRSAQAEIDAVAW 506
>AV408334
Length = 384
Score = 187 bits (474), Expect = 6e-48
Identities = 94/116 (81%), Positives = 102/116 (87%)
Frame = +2
Query: 1 MESLIGLVNRIQRACTVLGDHGAAADGNSFSSLWEALPTVAVVGGQSSGKSSVLESIVGR 60
M SLIGL+N+IQRACTVLGDHG SLWEALP+VAVVGGQSSGKSSVLES+VGR
Sbjct: 50 MTSLIGLINKIQRACTVLGDHGGEG-----LSLWEALPSVAVVGGQSSGKSSVLESVVGR 214
Query: 61 DFLPRGSGIVTRRPLVLQLHKLETGSQEYAEFLHMPRRKFTDFSLVRQEIQDETDR 116
DFLPRGSGIVTRRPLVLQLHK+E G QEYAEFLHMPR+KFTDF+ VR+EI DETDR
Sbjct: 215 DFLPRGSGIVTRRPLVLQLHKVEQGQQEYAEFLHMPRKKFTDFAAVRKEIADETDR 382
>AV420767
Length = 244
Score = 155 bits (393), Expect = 1e-38
Identities = 80/80 (100%), Positives = 80/80 (100%)
Frame = +3
Query: 105 LVRQEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLVDLPGLTKVAVEGQPESIVQE 164
LVRQEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLVDLPGLTKVAVEGQPESIVQE
Sbjct: 3 LVRQEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLVDLPGLTKVAVEGQPESIVQE 182
Query: 165 IETMVRTYVEKPNSIILAIS 184
IETMVRTYVEKPNSIILAIS
Sbjct: 183 IETMVRTYVEKPNSIILAIS 242
>BP058190
Length = 607
Score = 151 bits (381), Expect = 3e-37
Identities = 89/160 (55%), Positives = 107/160 (66%), Gaps = 4/160 (2%)
Frame = +2
Query: 3 SLIGLVNRIQRACTVLGDHGAAADGNSFSSLWEALPTVAVVGGQSSGKSSVLESIVGRDF 62
++I LVNR+Q + +G LP VAVVG QSSGKSSVLE++VGRDF
Sbjct: 161 TVISLVNRLQDIFSRVGSQSTID-----------LPQVAVVGSQSSGKSSVLEALVGRDF 307
Query: 63 LPRGSGIVTRRPLVLQL---HKLETGS-QEYAEFLHMPRRKFTDFSLVRQEIQDETDRVT 118
LPRG+ I TRRPLVLQL K GS +EY EFLH+P RKF DFS +R+EIQ ETDR
Sbjct: 308 LPRGNEICTRRPLVLQLVQTKKNPDGSDEEYGEFLHLPGRKFFDFSDIRREIQAETDREA 487
Query: 119 GKTKQISPIPIHLSIYSPNVVNLTLVDLPGLTKVAVEGQP 158
G K +S I L I+SP V+++TLVDLPG+TKV V QP
Sbjct: 488 GGNKGVSDKQIRLKIFSPTVLDITLVDLPGITKVPVGDQP 607
>TC9419 similar to UP|Q8S3C8 (Q8S3C8) Dynamin-like protein C, partial (16%)
Length = 565
Score = 144 bits (362), Expect = 5e-35
Identities = 66/96 (68%), Positives = 83/96 (85%)
Frame = +2
Query: 516 YAEGHFRRIASNVSSYIGLVADTLRNTIPKAVVFCQVRQAKQSLLNHFYTQIGKKEGKQL 575
Y + H R++ SNV++YI +V DTL+NTIPKAVV+CQVR+AK+SLLN+FY Q+GKKE ++L
Sbjct: 2 YTDTHLRKLGSNVNAYINMVCDTLKNTIPKAVVYCQVREAKRSLLNYFYVQVGKKEKEKL 181
Query: 576 SEMLDEDPALMERRQQCAKRLELYKAARDEIDSVSW 611
MLDEDPALME+R Q AKRLELYK ARD+IDSV+W
Sbjct: 182 GAMLDEDPALMEKRTQIAKRLELYKQARDDIDSVAW 289
>AV427660
Length = 210
Score = 107 bits (266), Expect = 7e-24
Identities = 49/69 (71%), Positives = 59/69 (85%)
Frame = +2
Query: 75 LVLQLHKLETGSQEYAEFLHMPRRKFTDFSLVRQEIQDETDRVTGKTKQISPIPIHLSIY 134
L LQLHK+E G QEYAEFLH+P +FTDFS+VR+EI+DETD+ T + QISP+P HL+IY
Sbjct: 2 LELQLHKIEEGLQEYAEFLHLPNTRFTDFSMVRKEIEDETDKTTPTSNQISPVPTHLTIY 181
Query: 135 SPNVVNLTL 143
SPNVVNLTL
Sbjct: 182 SPNVVNLTL 208
>TC9453 similar to UP|Q39821 (Q39821) SDL12A, partial (12%)
Length = 527
Score = 104 bits (260), Expect = 4e-23
Identities = 47/74 (63%), Positives = 67/74 (90%)
Frame = +1
Query: 538 TLRNTIPKAVVFCQVRQAKQSLLNHFYTQIGKKEGKQLSEMLDEDPALMERRQQCAKRLE 597
TLR++IPK++V+CQVR+AK+SLL+HF+ +IGK E ++LS +L+EDPA+MERR AKRLE
Sbjct: 1 TLRHSIPKSIVYCQVREAKRSLLDHFFPEIGKIEPERLSSLLNEDPAVMERRGALAKRLE 180
Query: 598 LYKAARDEIDSVSW 611
LY++A+DEID+V+W
Sbjct: 181 LYRSAQDEIDAVAW 222
>TC13644 similar to UP|Q9FNX5 (Q9FNX5) Dynamin-like protein DLP2
(AT3g60190/T2O9_170), partial (10%)
Length = 500
Score = 91.7 bits (226), Expect = 3e-19
Identities = 57/107 (53%), Positives = 66/107 (61%), Gaps = 2/107 (1%)
Frame = +3
Query: 509 ATPNVDRYAEGHFRRIASNVSSYIGLVADTLRNTIPKAVVFCQVRQAKQ-SLLNHF-YTQ 566
A PNVDRY EGH RRI SNVSSYIG+V+DTLRNTIPKA + + SLLNHF YT
Sbjct: 42 AAPNVDRYGEGHSRRIGSNVSSYIGMVSDTLRNTIPKACGLLSGQTSHNLSLLNHFPYTN 221
Query: 567 IGKKEGKQLSEMLDEDPALMERRQQCAKRLELYKAARDEIDSVSWVR 613
++ + + K LELYKAARDEIDSVS+ R
Sbjct: 222 RTERA*TH*QSC*MKTLP*WRGDKNVLKGLELYKAARDEIDSVSYAR 362
>TC8750 weakly similar to UP|Q39821 (Q39821) SDL12A, partial (10%)
Length = 588
Score = 64.7 bits (156), Expect = 4e-11
Identities = 41/83 (49%), Positives = 55/83 (65%), Gaps = 2/83 (2%)
Frame = +2
Query: 266 EYFANSPDYGHLANKMGSEYLAKLLSQHLES-VIRARIPSITSLINKSLEELESEMDHLG 324
E+FA PDY HLA+ MGSE+LA LLS++LE +I RIP+I S I++S+ EL +E L
Sbjct: 2 EFFATIPDYAHLASMMGSEHLAWLLSKYLEDWIIVNRIPAIQSFIDRSIRELRAEW--LC 175
Query: 325 RPIALDAGA-QLYTILELCRAFE 346
+ DAGA QL +LE + E
Sbjct: 176 TTVPSDAGARQLAQLLEDAQLLE 244
Score = 45.1 bits (105), Expect = 3e-05
Identities = 20/36 (55%), Positives = 28/36 (77%)
Frame = +2
Query: 576 SEMLDEDPALMERRQQCAKRLELYKAARDEIDSVSW 611
+++L+ED L RRQ CA+RLELY+ AR EI++V W
Sbjct: 230 AQLLEEDSVLTARRQGCAERLELYQFARYEIEAVLW 337
>AV770241
Length = 447
Score = 60.1 bits (144), Expect = 1e-09
Identities = 28/81 (34%), Positives = 46/81 (56%)
Frame = +2
Query: 518 EGHFRRIASNVSSYIGLVADTLRNTIPKAVVFCQVRQAKQSLLNHFYTQIGKKEGKQLSE 577
E R ++ V Y+ V ++L +PKAVV CQV +AK+ +LN Y+ I + ++ E
Sbjct: 185 EEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLYSSISAQSSAKIDE 364
Query: 578 MLDEDPALMERRQQCAKRLEL 598
+L ED + RR++ K+ L
Sbjct: 365 LLQEDHNVKRRRERAQKQSSL 427
>BP058074
Length = 575
Score = 57.4 bits (137), Expect = 7e-09
Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 1/150 (0%)
Frame = +1
Query: 1 MESLIGLVNRIQRACTVLGDHGAAADGNSFSSLWEALPTVAVVGGQSSGKSSVLESIVGR 60
++ L L + I++A +L D +S S V +GG +GKS+VL S++G
Sbjct: 121 IDDLSELADSIRQAAALLADEDVDDSNSSSSRRPSTFLNVVALGGVGAGKSAVLNSLIGH 300
Query: 61 DFLPRGSGIVTRRPLVLQLHKLETGSQEYAEFLHMPRRKFTDFSLVRQEIQDETDR-VTG 119
LP G TR P+ + L + + S + + + + +R +QD + TG
Sbjct: 301 PVLPTGENGATRAPICIDLQRDTSLSSKSIIIQIDNKSQQVSATALRHSLQDRLSKGSTG 480
Query: 120 KTKQISPIPIHLSIYSPNVVNLTLVDLPGL 149
K++ + + S P L LVDLPGL
Sbjct: 481 KSRDQILLKLRTSTAPP----LKLVDLPGL 558
>BP031425
Length = 185
Score = 49.7 bits (117), Expect = 1e-06
Identities = 30/58 (51%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Frame = +2
Query: 1 MESLIGLVNRIQRACTVLGDHGAAADGNSFSSLWEALPTVAVVG-GQSSGKSSVLESI 57
M+SL+ LVNRI+R C LG+ G D + W LP++AVVG SGKSSVL SI
Sbjct: 20 MKSLVALVNRIERFCRALGEDG---DAILPTLXWNPLPSIAVVGLSDXSGKSSVLCSI 184
>TC13228 homologue to UP|Q9LNN8 (Q9LNN8) F8L10.1 protein, partial (11%)
Length = 421
Score = 46.2 bits (108), Expect = 2e-05
Identities = 22/43 (51%), Positives = 31/43 (71%)
Frame = +2
Query: 37 LPTVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQL 79
+P + VGGQS GKSS+LE+++G F R + TRRPL+LQ+
Sbjct: 221 IPEIVAVGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQM 349
>TC18286 similar to UP|Q9LVV0 (Q9LVV0) Emb|CAB82814.1, partial (4%)
Length = 612
Score = 30.4 bits (67), Expect = 0.87
Identities = 18/76 (23%), Positives = 38/76 (49%), Gaps = 2/76 (2%)
Frame = +1
Query: 56 SIVGRDFLPRGSGIVTRRPLVLQLHKLETGSQEYAE--FLHMPRRKFTDFSLVRQEIQDE 113
S + +D + G ++ ++P ++ +ET +E E H+P +F + L+ Q ++
Sbjct: 160 SELAQDAVWSGVKVIKKKPGEKEIQMMETLIEEDCEKEAQHLPHDEFNNVDLLAQSPENN 339
Query: 114 TDRVTGKTKQISPIPI 129
+ ++ SPIPI
Sbjct: 340 VEEEKDVPREDSPIPI 387
>TC19197 similar to UP|Q9LV51 (Q9LV51) Genomic DNA, chromosome 3, P1 clone:
MOB24, partial (54%)
Length = 784
Score = 28.9 bits (63), Expect = 2.5
Identities = 15/48 (31%), Positives = 25/48 (51%)
Frame = +3
Query: 276 HLANKMGSEYLAKLLSQHLESVIRARIPSITSLINKSLEELESEMDHL 323
HL+ G+E L +LL HL+ + R S ++ELE E+ ++
Sbjct: 108 HLSQGPGTEKLRELLHWHLDEQRKKRAIQACSDTKSKMDELEKELTNI 251
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.135 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,117,364
Number of Sequences: 28460
Number of extensions: 91021
Number of successful extensions: 452
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of query: 613
length of database: 4,897,600
effective HSP length: 96
effective length of query: 517
effective length of database: 2,165,440
effective search space: 1119532480
effective search space used: 1119532480
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0316.4