BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0316.10
(359 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC18350 similar to UP|O81911 (O81911) T7I23.17 protein, partial ... 370 e-103
AV420114 257 2e-69
BP080413 104 3e-23
AV410993 48 2e-06
TC14520 similar to UP|Q8W194 (Q8W194) Zinc finger protein LSD2, ... 40 5e-04
BP049974 40 8e-04
TC20005 similar to UP|Q7XYB8 (Q7XYB8) 18S subunit ribosomal prot... 39 0.001
TC8260 similar to UP|Q94ES8 (Q94ES8) Nodule extensin (Fragment),... 38 0.003
TC15802 similar to UP|Q9XIV1 (Q9XIV1) mRNA expressed in cucumber... 37 0.007
TC14338 similar to UP|Q9MAH5 (Q9MAH5) F12M16.16, partial (33%) 36 0.009
TC15560 similar to SP|Q03173|NDPP_MOUSE NPC derived proline rich... 34 0.033
TC15253 weakly similar to UP|Q9ZT16 (Q9ZT16) Arabinogalactan-pro... 34 0.033
TC10508 similar to UP|AAQ88400 (AAQ88400) CaCBF1B, partial (21%) 34 0.043
BP030058 34 0.043
TC18080 similar to GB|AAL90935.1|19699138|AY090274 AT3g18790/MVE... 33 0.057
TC15833 similar to UP|Q9FJ12 (Q9FJ12) Genomic DNA, chromosome 5,... 33 0.057
AU251550 33 0.074
AW720113 33 0.074
TC13458 weakly similar to UP|Z282_HUMAN (Q9UDV7) Zinc finger pro... 33 0.097
BI420016 33 0.097
>TC18350 similar to UP|O81911 (O81911) T7I23.17 protein, partial (44%)
Length = 628
Score = 370 bits (951), Expect = e-103
Identities = 172/181 (95%), Positives = 173/181 (95%)
Frame = +1
Query: 1 MYSNMLVNCSNCRTPLQLPPGAGSIRCALCQAVTPVPDPRALPPQPYAVPGPSPSFHAPP 60
MYSNMLVNCSNCRTPLQLP GAGSIRCALCQA TPVPDPRALPPQPYA PGPSPSFHAP
Sbjct: 85 MYSNMLVNCSNCRTPLQLPTGAGSIRCALCQAGTPVPDPRALPPQPYAGPGPSPSFHAPT 264
Query: 61 GPPPSFHGRKKAVIVGISYRYSRHELKGCINDAKCMKYLLINKFKFPEPSIIMLTEEEDP 120
GPPPSFHGRKKAVIVGISYRYSRHELKGCINDAKCMKYLLINK KFPEPSIIMLTEEEDP
Sbjct: 265 GPPPSFHGRKKAVIVGISYRYSRHELKGCINDAKCMKYLLINKVKFPEPSIIMLTEEEDP 444
Query: 121 RGPKFPSKHNIRMAMYWLAQGCQPGDSLVFHYSGHGSQQRNYSGDEADGYDETICPFDFE 180
RGPKFPSKHNIRMAMYWLAQ CQPGDSLVFHYSGHGSQQRNY GDEADGYDET+CPFD E
Sbjct: 445 RGPKFPSKHNIRMAMYWLAQRCQPGDSLVFHYSGHGSQQRNYRGDEADGYDETMCPFDCE 624
Query: 181 T 181
T
Sbjct: 625 T 627
>AV420114
Length = 367
Score = 257 bits (656), Expect = 2e-69
Identities = 122/122 (100%), Positives = 122/122 (100%)
Frame = +1
Query: 192 AALVRPLTHGVRLHALIDACHSGTVLDLPYLCRMNSSGHYAWEDHRPRSGVWKGSSGGEV 251
AALVRPLTHGVRLHALIDACHSGTVLDLPYLCRMNSSGHYAWEDHRPRSGVWKGSSGGEV
Sbjct: 1 AALVRPLTHGVRLHALIDACHSGTVLDLPYLCRMNSSGHYAWEDHRPRSGVWKGSSGGEV 180
Query: 252 ICFSGCDDHQTSADTSALSKITSTGAMTFCFIQAIERGHGATYGSILNAMRTAIKNVGGS 311
ICFSGCDDHQTSADTSALSKITSTGAMTFCFIQAIERGHGATYGSILNAMRTAIKNVGGS
Sbjct: 181 ICFSGCDDHQTSADTSALSKITSTGAMTFCFIQAIERGHGATYGSILNAMRTAIKNVGGS 360
Query: 312 GG 313
GG
Sbjct: 361 GG 366
>BP080413
Length = 367
Score = 104 bits (259), Expect = 3e-23
Identities = 51/52 (98%), Positives = 51/52 (98%)
Frame = -3
Query: 308 VGGSGGGGGDVVTSLLSMLLTGGSGLSVGGLRQEPQLTACEMFDVYSKPFSL 359
VGGSGGGGGDVVTSLLSMLLTGGSGLSVGGLR EPQLTACEMFDVYSKPFSL
Sbjct: 365 VGGSGGGGGDVVTSLLSMLLTGGSGLSVGGLRPEPQLTACEMFDVYSKPFSL 210
>AV410993
Length = 427
Score = 48.1 bits (113), Expect = 2e-06
Identities = 31/98 (31%), Positives = 50/98 (50%), Gaps = 4/98 (4%)
Frame = +2
Query: 68 GRKKAVIVGISYRYSRHELKGCINDAKC----MKYLLINKFKFPEPSIIMLTEEEDPRGP 123
G KKA+++G+ +H I+D K MK L++ F + +I +L E+ DP
Sbjct: 128 GEKKALLIGL-----KHPQMNDIDDVKGKILRMKKFLMDLRGFSDNNITLLIEDGDPDKS 292
Query: 124 KFPSKHNIRMAMYWLAQGCQPGDSLVFHYSGHGSQQRN 161
+ P+ +NIR+ +L + +PGD L H HG N
Sbjct: 293 Q-PTDYNIRLETCYLVEHAKPGDILFIHLIAHGCSDGN 403
>TC14520 similar to UP|Q8W194 (Q8W194) Zinc finger protein LSD2, partial
(84%)
Length = 1112
Score = 40.4 bits (93), Expect = 5e-04
Identities = 17/30 (56%), Positives = 20/30 (66%)
Frame = +2
Query: 7 VNCSNCRTPLQLPPGAGSIRCALCQAVTPV 36
V C NCRT L P GA S++CALC +T V
Sbjct: 521 VPCGNCRTTLMYPYGAPSVKCALCHYITNV 610
Score = 38.1 bits (87), Expect = 0.002
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +2
Query: 9 CSNCRTPLQLPPGAGSIRCALCQAVTPVPDP 39
C+ CR+ L P GA ++ CALC +T VP P
Sbjct: 296 CNGCRSILLYPRGATNVCCALCNTITAVPPP 388
Score = 32.7 bits (73), Expect = 0.097
Identities = 13/29 (44%), Positives = 15/29 (50%)
Frame = +2
Query: 9 CSNCRTPLQLPPGAGSIRCALCQAVTPVP 37
C CRT L GA S+RC+ C V P
Sbjct: 413 CGGCRTLLMYTRGAASVRCSCCHTVNLAP 499
>BP049974
Length = 592
Score = 39.7 bits (91), Expect = 8e-04
Identities = 17/31 (54%), Positives = 20/31 (63%)
Frame = +2
Query: 9 CSNCRTPLQLPPGAGSIRCALCQAVTPVPDP 39
CS CR L P GA ++ CA+C AVT VP P
Sbjct: 347 CSGCRNLLLYPVGATTVCCAVCNAVTAVPPP 439
>TC20005 similar to UP|Q7XYB8 (Q7XYB8) 18S subunit ribosomal protein
(Fragment), partial (36%)
Length = 504
Score = 39.3 bits (90), Expect = 0.001
Identities = 15/29 (51%), Positives = 19/29 (64%)
Frame = +3
Query: 9 CSNCRTPLQLPPGAGSIRCALCQAVTPVP 37
C+ CR L P GAG++ CA C +TPVP
Sbjct: 144 CNGCRNILVYPRGAGNVCCAWCNVITPVP 230
Score = 39.3 bits (90), Expect = 0.001
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +3
Query: 7 VNCSNCRTPLQLPPGAGSIRCALCQAVT 34
++C NCRT L P GA S++CA+C +T
Sbjct: 369 IHCGNCRTALMYPHGALSVKCAICHYIT 452
Score = 36.2 bits (82), Expect = 0.009
Identities = 14/30 (46%), Positives = 18/30 (59%)
Frame = +3
Query: 9 CSNCRTPLQLPPGAGSIRCALCQAVTPVPD 38
C CRT L GA S+RC+ C +T VP+
Sbjct: 261 CGGCRTLLMYANGATSVRCSCCNTITRVPE 350
>TC8260 similar to UP|Q94ES8 (Q94ES8) Nodule extensin (Fragment), partial
(79%)
Length = 1017
Score = 37.7 bits (86), Expect = 0.003
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +3
Query: 35 PVPDPRALPPQPYAVPGPSPSFHAPPGPPPSFH 67
P P P PP Y P P P +H+PP PPP H
Sbjct: 300 PSPPP---PPHKYPHPHPHPVYHSPPPPPPKKH 389
Score = 33.9 bits (76), Expect = 0.043
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 35 PVPDPRALPPQPYAVPGPSPSFHAPPGPPP 64
P P + PP + P P P +H+PP PPP
Sbjct: 435 PHPVYHSPPPPVHTYPHPHPVYHSPPPPPP 524
Score = 30.8 bits (68), Expect = 0.37
Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 12/40 (30%)
Frame = +3
Query: 37 PDPRALPPQPYAVPGP------------SPSFHAPPGPPP 64
P P PP PY P P P +H+PP PPP
Sbjct: 162 PPPVHSPPPPYEKPHPVYHSPPPPYEKPHPVYHSPPPPPP 281
Score = 30.0 bits (66), Expect = 0.63
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 43 PPQPYAVPGPSPSFHAPPGP 62
PP+PY+ P P H+PP P
Sbjct: 132 PPKPYSYHSPPPPVHSPPPP 191
Score = 27.7 bits (60), Expect = 3.1
Identities = 12/34 (35%), Positives = 17/34 (49%), Gaps = 6/34 (17%)
Frame = +3
Query: 35 PVPDPR------ALPPQPYAVPGPSPSFHAPPGP 62
P P P+ + PP + P P P +H+PP P
Sbjct: 366 PPPPPKKHYKYSSPPPPVHTYPHPHPVYHSPPPP 467
Score = 26.9 bits (58), Expect = 5.3
Identities = 14/34 (41%), Positives = 16/34 (46%), Gaps = 3/34 (8%)
Frame = +3
Query: 37 PDPRALPPQPYAVPGPSPSFHAPPGP---PPSFH 67
P A PP P P P +H+PP P PP H
Sbjct: 534 PYKYASPPPPPVHTYPHPVYHSPPPPVHSPPPPH 635
>TC15802 similar to UP|Q9XIV1 (Q9XIV1) mRNA expressed in cucumber hypocotyls
(Arabinogalactan protein), partial (26%)
Length = 795
Score = 36.6 bits (83), Expect = 0.007
Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Frame = +2
Query: 14 TPLQLPPGAGSIRCALCQAVTPV--PDPRALP---PQPYAVPGPSPSFHAPPGPPPS 65
TP P A + A VTPV P P A+P P P AVP SP +PP P P+
Sbjct: 212 TPAASPSTATAPAPATTTPVTPVTSPPPAAVPVASPPPAAVPVSSPPAKSPPAPAPT 382
Score = 26.6 bits (57), Expect = 6.9
Identities = 17/62 (27%), Positives = 21/62 (33%)
Frame = +2
Query: 15 PLQLPPGAGSIRCALCQAVTPVPDPRALPPQPYAVPGPSPSFHAPPGPPPSFHGRKKAVI 74
P + PP + VT P P + P+PS P PP G AV
Sbjct: 350 PAKSPPAPAPTAVPVAAPVTTPEVPAPAPSKTKKDAAPAPSPVVPDSPPAGAPGPSDAVS 529
Query: 75 VG 76
G
Sbjct: 530 PG 535
>TC14338 similar to UP|Q9MAH5 (Q9MAH5) F12M16.16, partial (33%)
Length = 1751
Score = 36.2 bits (82), Expect = 0.009
Identities = 22/52 (42%), Positives = 26/52 (49%)
Frame = +3
Query: 14 TPLQLPPGAGSIRCALCQAVTPVPDPRALPPQPYAVPGPSPSFHAPPGPPPS 65
+PLQ PP +L A T P PP + P P+PS APP PPPS
Sbjct: 99 SPLQPPPPLPPSPPSLSSAATVPSPPYPSPPAATSSPPPAPSPPAPP-PPPS 251
Score = 28.1 bits (61), Expect = 2.4
Identities = 16/42 (38%), Positives = 21/42 (49%), Gaps = 8/42 (19%)
Frame = +3
Query: 32 AVTPVPDPRALPPQP----YAVPGPSPSFHAPP----GPPPS 65
A +P+ P LPP P A PSP + +PP PPP+
Sbjct: 93 APSPLQPPPPLPPSPPSLSSAATVPSPPYPSPPAATSSPPPA 218
>TC15560 similar to SP|Q03173|NDPP_MOUSE NPC derived proline rich protein 1
(NDPP-1). {Mus musculus;}, partial (8%)
Length = 1134
Score = 34.3 bits (77), Expect = 0.033
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +3
Query: 35 PVPDPRALPPQPYAVPGPSPSFHAPPGPPP 64
P+P P+A PP P +P P PS PP PP
Sbjct: 204 PLPPPQA-PPLPSHLPSPEPSSTMPPSTPP 290
>TC15253 weakly similar to UP|Q9ZT16 (Q9ZT16) Arabinogalactan-protein
(ATAGP4) (AT5G10430/F12B17_220), partial (42%)
Length = 575
Score = 34.3 bits (77), Expect = 0.033
Identities = 20/53 (37%), Positives = 22/53 (40%), Gaps = 2/53 (3%)
Frame = +3
Query: 15 PLQLPPGAGSIRCALCQAVTPVPDPRALPPQPYAVP--GPSPSFHAPPGPPPS 65
P PP A A TP P P P A P P+PS +PP P PS
Sbjct: 225 PATPPPAATPAPTTTPPAATPAPSASPPAPTPTASPTGAPTPSASSPPAPIPS 383
Score = 28.9 bits (63), Expect = 1.4
Identities = 20/53 (37%), Positives = 25/53 (46%)
Frame = +3
Query: 14 TPLQLPPGAGSIRCALCQAVTPVPDPRALPPQPYAVPGPSPSFHAPPGPPPSF 66
TP P GA + + A P+P A P P A PGP+ S PP P +F
Sbjct: 315 TPTASPTGAPTPSASSPPA--PIPSGPASGPGPAAGPGPN-SADTPPPPSAAF 464
Score = 27.7 bits (60), Expect = 3.1
Identities = 17/46 (36%), Positives = 21/46 (44%)
Frame = +3
Query: 20 PGAGSIRCALCQAVTPVPDPRALPPQPYAVPGPSPSFHAPPGPPPS 65
PGA + TP P P A P P A P P+ + AP PP+
Sbjct: 153 PGAAPTQAP---TTTPPPPPAAAPAPPPATPPPAAT-PAPTTTPPA 278
>TC10508 similar to UP|AAQ88400 (AAQ88400) CaCBF1B, partial (21%)
Length = 554
Score = 33.9 bits (76), Expect = 0.043
Identities = 20/51 (39%), Positives = 24/51 (46%), Gaps = 6/51 (11%)
Frame = -1
Query: 20 PGAGSIRCALCQAVTPVPDPRALPPQPYAVPGPSPSFHAP------PGPPP 64
P S+ A C + TP P P L P + P PSP+ H P P PPP
Sbjct: 284 PSNVSVTSAPCFSETPAP-PLPLGPLSPSTPAPSPTTHHPSSPHRSPSPPP 135
>BP030058
Length = 455
Score = 33.9 bits (76), Expect = 0.043
Identities = 17/41 (41%), Positives = 19/41 (45%)
Frame = -1
Query: 25 IRCALCQAVTPVPDPRALPPQPYAVPGPSPSFHAPPGPPPS 65
I+C C DP PP P P P P +PP PPPS
Sbjct: 452 IKCGSCPCGDTCGDPPPPPPSPSPPPPPLPC-PSPPPPPPS 333
Score = 33.5 bits (75), Expect = 0.057
Identities = 17/43 (39%), Positives = 19/43 (43%), Gaps = 1/43 (2%)
Frame = -1
Query: 23 GSIRCA-LCQAVTPVPDPRALPPQPYAVPGPSPSFHAPPGPPP 64
GS C C P P + PP P P P P +PP PPP
Sbjct: 443 GSCPCGDTCGDPPPPPPSPSPPPPPLPCPSPPPPPPSPPPPPP 315
Score = 30.0 bits (66), Expect = 0.63
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -1
Query: 34 TPVPDPRALPPQPYAVPGPSPSFHAPPGPPP 64
+P P P LP P PSP PP PPP
Sbjct: 392 SPSPPPPPLPCPSPPPPPPSPPPPPPPSPPP 300
>TC18080 similar to GB|AAL90935.1|19699138|AY090274 AT3g18790/MVE11_17
{Arabidopsis thaliana;}, partial (24%)
Length = 585
Score = 33.5 bits (75), Expect = 0.057
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = -1
Query: 13 RTPLQLPPGAGSIRCALCQAVTPVPDPRALPPQPYAVPGP--SPSFHAPPGPPPSF 66
+TP PP + S P P + PPQP+ P P SPS P PPP F
Sbjct: 174 QTPSHSPPASPSS-----------PYPSSSPPQPHPPPPPLESPSPQPTPQPPPRF 40
>TC15833 similar to UP|Q9FJ12 (Q9FJ12) Genomic DNA, chromosome 5, TAC
clone:K21P3 (Extensin like protein), partial (25%)
Length = 542
Score = 33.5 bits (75), Expect = 0.057
Identities = 15/41 (36%), Positives = 21/41 (50%)
Frame = +1
Query: 25 IRCALCQAVTPVPDPRALPPQPYAVPGPSPSFHAPPGPPPS 65
I+C +C + +P PP P P PS + + PP P PS
Sbjct: 322 IQCTMCSSCENPCNPVPSPPPPPPRPPPSTTNNCPPPPSPS 444
Score = 30.0 bits (66), Expect = 0.63
Identities = 20/67 (29%), Positives = 26/67 (37%), Gaps = 7/67 (10%)
Frame = +1
Query: 9 CSNCRTPLQL----PPGAGSIRCALCQAVTPVPDPRALPPQP---YAVPGPSPSFHAPPG 61
CS+C P PP + P P P PP Y+ P PS ++ P
Sbjct: 337 CSSCENPCNPVPSPPPPPPRPPPSTTNNCPPPPSPSTSPPTTYNYYSPPPPSQYSYSSPP 516
Query: 62 PPPSFHG 68
PP S +G
Sbjct: 517 PPSSSNG 537
>AU251550
Length = 329
Score = 33.1 bits (74), Expect = 0.074
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = +2
Query: 19 PPGAGSIRCALCQAVTPVPDPRALPPQPYAVPGPSP--SFHAPPGPP 63
PP G R A P P PP P+ P P P F+ PP PP
Sbjct: 134 PPPPGPPRDPYAPAPPPPPFGHHHPPPPHGPPSPPPPAMFYQPPPPP 274
Score = 32.3 bits (72), Expect = 0.13
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Frame = +2
Query: 35 PVPDPRAL---PPQPYAVPGPSPSFHAP-PGPPP 64
P P P A+ PP P PGP H P PGPPP
Sbjct: 227 PSPPPPAMFYQPPPPPGPPGPPQPPHPPGPGPPP 328
Score = 30.8 bits (68), Expect = 0.37
Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 8/36 (22%)
Frame = +2
Query: 37 PDPRALPPQPYAVPGPSPSF--------HAPPGPPP 64
P P P PYA P P F H PP PPP
Sbjct: 134 PPPPGPPRDPYAPAPPPPPFGHHHPPPPHGPPSPPP 241
Score = 28.1 bits (61), Expect = 2.4
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Frame = +2
Query: 38 DPRALPPQPYAVPGPS----PSFHAPPGPPP 64
D R PPQP PGP P +H PP P P
Sbjct: 20 DHRHWPPQP-GPPGPPGPPPPGYHNPPPPGP 109
>AW720113
Length = 512
Score = 33.1 bits (74), Expect = 0.074
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = +1
Query: 37 PDPRALPPQPYAVPGPSPSFHAPPGPPPSFH 67
P P PP P P P P PP PPP FH
Sbjct: 97 PSPLDPPPPPLPPPQPQPQ-PPPPPPPPQFH 186
Score = 27.7 bits (60), Expect = 3.1
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 35 PVPDPRALPPQPYAVPGPSPSFHAPPGPPPSFHGRKKAVIV 75
P+P P+ P P P P P FH G P H + +V
Sbjct: 124 PLPPPQPQPQPP--PPPPPPQFHENEG*NPFIHDQPSVGVV 240
>TC13458 weakly similar to UP|Z282_HUMAN (Q9UDV7) Zinc finger protein 282
(HTLV-I U5RE binding protein 1) (HUB-1), partial (3%)
Length = 810
Score = 32.7 bits (73), Expect = 0.097
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Frame = +2
Query: 14 TPLQLPPGAGSIRCALCQAVTP------VPDPRALPPQPYAVPGPSPSFHAPPGPPPS 65
TP+ G +CA C +P +P P PP P P PS + + PP P PS
Sbjct: 218 TPMPAVNGTDE-KCAPCGYTSPPPPSPAIPPPSPPPPSPKKPPSPS-TVYCPPPPAPS 385
>BI420016
Length = 559
Score = 32.7 bits (73), Expect = 0.097
Identities = 18/57 (31%), Positives = 23/57 (39%)
Frame = +2
Query: 9 CSNCRTPLQLPPGAGSIRCALCQAVTPVPDPRALPPQPYAVPGPSPSFHAPPGPPPS 65
C++ P P A + +TP P P + P P PS PP PPPS
Sbjct: 191 CTHGGNPSPKPVPASTPSPPSSPTLTPPPSPPSPTPNAPLSPSSPPSPPTPPSPPPS 361
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.138 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,863,833
Number of Sequences: 28460
Number of extensions: 154287
Number of successful extensions: 3039
Number of sequences better than 10.0: 262
Number of HSP's better than 10.0 without gapping: 1977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2684
length of query: 359
length of database: 4,897,600
effective HSP length: 91
effective length of query: 268
effective length of database: 2,307,740
effective search space: 618474320
effective search space used: 618474320
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0316.10