BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0314.9
(344 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC11537 similar to PIR|A96839|A96839 F23A5.2(form2) [imported] -... 126 5e-30
TC14533 homologue to PIR|T52386|T52386 mitotic checkpoint protei... 115 8e-27
TC7876 homologue to UP|GBLP_SOYBN (Q39836) Guanine nucleotide-bi... 66 1e-11
AV427164 62 2e-10
TC11756 weakly similar to GB|AAH01494.1|16306637|BC001494 U5 snR... 53 9e-08
BP038344 52 1e-07
TC13023 similar to UP|Q8L830 (Q8L830) WD40-repeat protein (Fragm... 49 9e-07
TC13152 similar to UP|Q84XX6 (Q84XX6) Leunig (Fragment), partial... 49 1e-06
TC10217 homologue to UP|AAQ54906 (AAQ54906) Cell cycle switch pr... 47 4e-06
TC19291 homologue to PIR|A96839|A96839 F23A5.2(form2) [imported]... 47 4e-06
BP057142 47 4e-06
AV780136 44 4e-05
TC18293 similar to UP|PWP1_HUMAN (Q13610) Periodic tryptophan pr... 44 4e-05
AV413963 42 1e-04
TC16695 homologue to UP|Q94KS2 (Q94KS2) TGF-beta receptor-intera... 41 3e-04
TC10804 similar to PIR|T00593|T02480 sec13-related protein At2g3... 40 4e-04
BP078012 40 4e-04
TC11250 homologue to UP|AAQ72359 (AAQ72359) B-type cell cycle sw... 39 0.001
TC19491 similar to GB|AAP37692.1|30725340|BT008333 At4g29830 {Ar... 38 0.002
TC9494 similar to PIR|T00593|T02480 sec13-related protein At2g30... 38 0.002
>TC11537 similar to PIR|A96839|A96839 F23A5.2(form2) [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(18%)
Length = 508
Score = 126 bits (317), Expect = 5e-30
Identities = 54/63 (85%), Positives = 62/63 (97%)
Frame = +3
Query: 282 CSQPIPCSAFNNDGSIFAYSVCYDWSKGAENHNPTTAKTNIYLHLPQESEVKGKPRIGAT 341
C+QPIPCSAFN+DGSI+AY+VCYDWSKGAENHNPTTAK+NI+LHLPQE+EVKGKP+ GAT
Sbjct: 3 CNQPIPCSAFNSDGSIYAYAVCYDWSKGAENHNPTTAKSNIFLHLPQETEVKGKPKAGAT 182
Query: 342 GRK 344
GRK
Sbjct: 183 GRK 191
>TC14533 homologue to PIR|T52386|T52386 mitotic checkpoint protein
[imported] - Arabidopsis thaliana {Arabidopsis
thaliana;}, partial (47%)
Length = 669
Score = 115 bits (289), Expect = 8e-27
Identities = 59/156 (37%), Positives = 89/156 (56%), Gaps = 6/156 (3%)
Frame = +2
Query: 189 SPLKYQTRCLAAFPDQQGFLVGSIEGRVGVHHLD--DSQQGKNFTFKCHREGNE----IY 242
S LKYQTRC+ +P+ G+ + S+EGRV + D ++ Q K + FKCHR+ +Y
Sbjct: 5 SSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDFVY 184
Query: 243 SVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMLRCSQPIPCSAFNNDGSIFAYSV 302
VN++ FHP++ TFAT G DG N WD ++K+RL + I +F+ DG + A +
Sbjct: 185 PVNAMAFHPIYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVAS 364
Query: 303 CYDWSKGAENHNPTTAKTNIYLHLPQESEVKGKPRI 338
Y + +G + H K IY+ E EVK KP++
Sbjct: 365 SYTFEEGPKPHE----KDAIYVRSVNEIEVKPKPQV 460
>TC7876 homologue to UP|GBLP_SOYBN (Q39836) Guanine nucleotide-binding
protein beta subunit-like protein, complete
Length = 1379
Score = 65.9 bits (159), Expect = 1e-11
Identities = 69/286 (24%), Positives = 119/286 (41%), Gaps = 13/286 (4%)
Frame = +3
Query: 35 ANLLVATSWDNQVRCWEVARNVAT--APKASIS-HDQPVLCSAWKDDGTTVFSGGCDKQV 91
++++V S D + W + + T P+ ++ H V DG SG D ++
Sbjct: 153 SDMIVTASRDKSIILWHLTKEDKTYGVPRRRLTGHSHFVQDVVLSSDGQFALSGSWDGEL 332
Query: 92 KMWPLLSGGQPMTVAMHDAPVKDIAWIPEMSLLVTGSWDRTIKYWDTR-------QPNPV 144
++W L +G H V +A+ + +V+ S DRTIK W+T Q N
Sbjct: 333 RLWDLAAGTSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQDNDA 512
Query: 145 HTQQLPERCYAMSVKHPLMVVGTADRNILVYNLQNPQVEFKRIISPLKYQTRCLAAFPDQ 204
H+ + ++ S P +V + DR + V+NL N + + ++ +A PD
Sbjct: 513 HSDWVSCVRFSPSTLQPTIVSASWDRTVKVWNLTN--CKLRNTLAGHSGYVNTVAVSPD- 683
Query: 205 QGFLVGSIEGRVGVHHLDDSQQGKNFTFKCHREGNEIYSVNSLNFHPVHHTFATAGSDGA 264
G L S G+ GV L D +GK + I +++L F P + + A ++ +
Sbjct: 684 -GSLCAS-GGKDGVILLWDLAEGKRL---YSLDAGSI--IHALCFSP-NRYWLCAATETS 839
Query: 265 FNFWDKDSK---QRLKAMLRCSQPIPCSAFNNDGSIFAYSVCYDWS 307
WD +SK + LK L+ N + Y +WS
Sbjct: 840 IKIWDLESKSIVEDLKVDLKTEADATTGGNTNKKKVI-YCTSLNWS 974
Score = 56.2 bits (134), Expect = 8e-09
Identities = 60/264 (22%), Positives = 105/264 (39%), Gaps = 18/264 (6%)
Frame = +3
Query: 23 SDSVSSLCFSPKANLLVATSWDNQVRCWEVARNVATAPKASISHDQPVLCSAWKDDGTTV 82
S V + S ++ SWD ++R W++A T+ + + H + VL A+ D +
Sbjct: 258 SHFVQDVVLSSDGQFALSGSWDGELRLWDLA--AGTSARRFVGHTKDVLSVAFSIDNRQI 431
Query: 83 FSGGCDKQVKMWPLLSGGQPMTVAMHDAP---VKDIAWIPE--MSLLVTGSWDRTIKYW- 136
S D+ +K+W L G T+ +DA V + + P +V+ SWDRT+K W
Sbjct: 432 VSASRDRTIKLWNTL-GECKYTIQDNDAHSDWVSCVRFSPSTLQPTIVSASWDRTVKVWN 608
Query: 137 --DTRQPNPVHTQQLPERCYAMSVKHPLMVVGTADRNILVYNLQNPQVEFKRIISPLKYQ 194
+ + N + A+S L G D IL+++L E KR+ S
Sbjct: 609 LTNCKLRNTLAGHSGYVNTVAVSPDGSLCASGGKDGVILLWDL----AEGKRLYSLDAGS 776
Query: 195 TRCLAAFPDQQGFLVGSIEGRVGVHHLD----------DSQQGKNFTFKCHREGNEIYSV 244
F + +L + E + + L+ D + + T + ++
Sbjct: 777 IIHALCFSPNRYWLCAATETSIKIWDLESKSIVEDLKVDLKTEADATTGGNTNKKKVIYC 956
Query: 245 NSLNFHPVHHTFATAGSDGAFNFW 268
SLN+ T + +DG W
Sbjct: 957 TSLNWSADGSTLFSGYTDGVIRVW 1028
Score = 33.9 bits (76), Expect = 0.041
Identities = 19/86 (22%), Positives = 43/86 (49%), Gaps = 15/86 (17%)
Frame = +3
Query: 26 VSSLCFSPKANLLVATSWDNQVRCWEV-ARNVATAPKASISHD------------QPVLC 72
+ +LCFSP L A + + ++ W++ ++++ K + + + + C
Sbjct: 780 IHALCFSPNRYWLCAAT-ETSIKIWDLESKSIVEDLKVDLKTEADATTGGNTNKKKVIYC 956
Query: 73 SA--WKDDGTTVFSGGCDKQVKMWPL 96
++ W DG+T+FSG D +++W +
Sbjct: 957 TSLNWSADGSTLFSGYTDGVIRVWAI 1034
>AV427164
Length = 374
Score = 61.6 bits (148), Expect = 2e-10
Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 5/121 (4%)
Frame = +2
Query: 57 ATAPKASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPMTVAMHDAPVKDIA 116
A + H PVL + DD + FS D V+ + + Q + HDAPV+ +
Sbjct: 14 ANVLRGEFIHGGPVLDCCFHDDSSG-FSVAADNTVRRL-VFNTSQEDILGKHDAPVRCVE 187
Query: 117 WIPEMSLLVTGSWDRTIKYWDTR-----QPNPVHTQQLPERCYAMSVKHPLMVVGTADRN 171
+ L+TGSWD+T+K WD R + V T PER Y++S+ +VV TA R+
Sbjct: 188 YSYAAGQLITGSWDKTLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRH 367
Query: 172 I 172
+
Sbjct: 368 V 370
>TC11756 weakly similar to GB|AAH01494.1|16306637|BC001494 U5 snRNP-specific
40 kDa protein (hPrp8-binding) {Homo sapiens;} , partial
(43%)
Length = 719
Score = 52.8 bits (125), Expect = 9e-08
Identities = 41/147 (27%), Positives = 63/147 (41%), Gaps = 3/147 (2%)
Frame = +1
Query: 26 VSSLCFSPKANLLVATSWDNQVRCWEVARNVATAPKASISHDQPVLCSAWKDDGTTVFSG 85
+ ++ F+P ++ + S D ++ W V H VL W DGT + S
Sbjct: 313 IYTMKFNPAGTVIASGSHDREIFLWNVHGECKNFMVLK-GHKNAVLDLHWTTDGTQIVSA 489
Query: 86 GCDKQVKMWPLLSGGQPMTVAMHDAPVKDIAWIPEM---SLLVTGSWDRTIKYWDTRQPN 142
DK V++W + +G Q + H + V P L+V+GS D T K WD RQ
Sbjct: 490 SPDKTVRVWDVETGKQVKKMVEHLSYVNSCC--PSRRGPPLVVSGSDDGTAKLWDMRQRG 663
Query: 143 PVHTQQLPERCYAMSVKHPLMVVGTAD 169
+ T P+ K+ + VG AD
Sbjct: 664 SIQT--FPD-------KYQITAVGFAD 717
>BP038344
Length = 525
Score = 52.4 bits (124), Expect = 1e-07
Identities = 29/122 (23%), Positives = 55/122 (44%)
Frame = +2
Query: 25 SVSSLCFSPKANLLVATSWDNQVRCWEVARNVATAPKASISHDQPVLCSAWKDDGTTVFS 84
+V+ + FS LL + S D + W A + H + + AW D + S
Sbjct: 104 AVACVKFSNDGTLLASASLDKTLIIWSSA--TLSLLHRLTGHSEGISDLAWSSDSHYICS 277
Query: 85 GGCDKQVKMWPLLSGGQPMTVAMHDAPVKDIAWIPEMSLLVTGSWDRTIKYWDTRQPNPV 144
D+ +++W G T+ H V + + P+ + +V+GS+D T++ W+ + +
Sbjct: 278 ASDDRTLRIWDATGGDCVKTLRGHTHAVFCVNFNPQSNYIVSGSFDETVRVWEVKTGRCI 457
Query: 145 HT 146
HT
Sbjct: 458 HT 463
Score = 49.3 bits (116), Expect = 9e-07
Identities = 29/121 (23%), Positives = 54/121 (43%), Gaps = 3/121 (2%)
Frame = +2
Query: 61 KASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPMTVAMHDAPVKDIAWIPE 120
K +HD V C + +DGT + S DK + +W + + H + D+AW +
Sbjct: 80 KTLTAHDAAVACVKFSNDGTLLASASLDKTLIIWSSATLSLLHRLTGHSEGISDLAWSSD 259
Query: 121 MSLLVTGSWDRTIKYWDTRQPNPVHTQQLPER---CYAMSVKHPLMVVGTADRNILVYNL 177
+ + S DRT++ WD + V T + C + + +V G+ D + V+ +
Sbjct: 260 SHYICSASDDRTLRIWDATGGDCVKTLRGHTHAVFCVNFNPQSNYIVSGSFDETVRVWEV 439
Query: 178 Q 178
+
Sbjct: 440 K 442
Score = 41.2 bits (95), Expect = 3e-04
Identities = 22/93 (23%), Positives = 40/93 (42%)
Frame = +2
Query: 23 SDSVSSLCFSPKANLLVATSWDNQVRCWEVARNVATAPKASISHDQPVLCSAWKDDGTTV 82
S+ +S L +S ++ + + S D +R W+ K H V C + +
Sbjct: 224 SEGISDLAWSSDSHYICSASDDRTLRIWDATGGDCV--KTLRGHTHAVFCVNFNPQSNYI 397
Query: 83 FSGGCDKQVKMWPLLSGGQPMTVAMHDAPVKDI 115
SG D+ V++W + +G T+ H PV +
Sbjct: 398 VSGSFDETVRVWEVKTGRCIHTIIAHTMPVTSV 496
>TC13023 similar to UP|Q8L830 (Q8L830) WD40-repeat protein (Fragment),
partial (18%)
Length = 591
Score = 49.3 bits (116), Expect = 9e-07
Identities = 24/80 (30%), Positives = 44/80 (55%)
Frame = +1
Query: 20 QPPSDSVSSLCFSPKANLLVATSWDNQVRCWEVARNVATAPKASISHDQPVLCSAWKDDG 79
Q S+SV++L SP NLL ++ Q+R W++ + ++ H+ PV+C + G
Sbjct: 274 QGDSESVTALALSPDDNLLFSSGHSRQIRVWDL--STLKCVRSWKGHEGPVMCMSCHPSG 447
Query: 80 TTVFSGGCDKQVKMWPLLSG 99
+ +GG D++V +W + G
Sbjct: 448 GLLATGGADRKVLVWDVDGG 507
>TC13152 similar to UP|Q84XX6 (Q84XX6) Leunig (Fragment), partial (60%)
Length = 453
Score = 48.9 bits (115), Expect = 1e-06
Identities = 23/58 (39%), Positives = 32/58 (54%)
Frame = +2
Query: 84 SGGCDKQVKMWPLLSGGQPMTVAMHDAPVKDIAWIPEMSLLVTGSWDRTIKYWDTRQP 141
SGG DK+ +W S Q T+ H A + D+ + P M L T S+D+T+K WD P
Sbjct: 11 SGGHDKKAVLWYTDSLKQKATLEEHSALITDVRFSPSMPRLATSSFDKTVKVWDVDNP 184
>TC10217 homologue to UP|AAQ54906 (AAQ54906) Cell cycle switch protein
CCS52a, partial (45%)
Length = 640
Score = 47.4 bits (111), Expect = 4e-06
Identities = 38/153 (24%), Positives = 66/153 (42%), Gaps = 7/153 (4%)
Frame = +2
Query: 66 HDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPMTVAMHDAPVKDIAWIPEMSLLV 125
H V W D + SGG D ++ +W S + H A VK IAW P + L+
Sbjct: 113 HKSXVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLL 292
Query: 126 T---GSWDRTIKYWDTRQPNPVHT----QQLPERCYAMSVKHPLMVVGTADRNILVYNLQ 178
G+ DR I++W+T + + Q+ ++ +V + G + I+V+ +
Sbjct: 293 ASGGGTADRCIRFWNTTTNSHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVW--R 466
Query: 179 NPQVEFKRIISPLKYQTRCLAAFPDQQGFLVGS 211
P + ++ Y+ LA PD Q + G+
Sbjct: 467 YPTMSKLATLTGHTYRVLYLAISPDGQTIVTGA 565
Score = 34.7 bits (78), Expect = 0.024
Identities = 30/139 (21%), Positives = 53/139 (37%), Gaps = 12/139 (8%)
Frame = +2
Query: 11 NPNKSFEVNQPPSDSVSSLC----------FSPKANLLVATSWDNQVRCWEVARNVATAP 60
N N+ F NQ + V C +SP + L+A+ RC +
Sbjct: 176 NDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNSH 355
Query: 61 KASISHDQPVLCSAWKDDGTTVFS--GGCDKQVKMWPLLSGGQPMTVAMHDAPVKDIAWI 118
+ + V W + + S G Q+ +W + + T+ H V +A
Sbjct: 356 LSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTYRVLYLAIS 535
Query: 119 PEMSLLVTGSWDRTIKYWD 137
P+ +VTG+ D T+ +W+
Sbjct: 536 PDGQTIVTGAGDETLXFWN 592
>TC19291 homologue to PIR|A96839|A96839 F23A5.2(form2) [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(7%)
Length = 511
Score = 47.4 bits (111), Expect = 4e-06
Identities = 21/23 (91%), Positives = 22/23 (95%)
Frame = +2
Query: 322 IYLHLPQESEVKGKPRIGATGRK 344
I+LHLPQESEVKGKPR GATGRK
Sbjct: 2 IFLHLPQESEVKGKPRTGATGRK 70
>BP057142
Length = 524
Score = 47.4 bits (111), Expect = 4e-06
Identities = 17/56 (30%), Positives = 34/56 (60%)
Frame = -1
Query: 82 VFSGGCDKQVKMWPLLSGGQPMTVAMHDAPVKDIAWIPEMSLLVTGSWDRTIKYWD 137
+++G D V ++ L++G Q + H+APV+D +W P ++++ +WD I W+
Sbjct: 473 IYTGSSDSSVFIYDLVTGAQVAKLDHHEAPVRDCSWHPYYPMMISSAWDGDIVRWE 306
>AV780136
Length = 558
Score = 43.9 bits (102), Expect = 4e-05
Identities = 21/73 (28%), Positives = 37/73 (49%)
Frame = -1
Query: 74 AWKDDGTTVFSGGCDKQVKMWPLLSGGQPMTVAMHDAPVKDIAWIPEMSLLVTGSWDRTI 133
A + GT + SGG +K +++W SG + + + H ++ + ++GS D I
Sbjct: 552 AMNEGGTVLVSGGTEKVIRVWDPRSGSKTLKLRGHADNIRALLLDSTGRYCLSGSSDSMI 373
Query: 134 KYWDTRQPNPVHT 146
+ WD QP +HT
Sbjct: 372 RLWDIGQPRCLHT 334
>TC18293 similar to UP|PWP1_HUMAN (Q13610) Periodic tryptophan protein 1
homolog (Keratinocyte protein IEF SSP 9502), partial
(7%)
Length = 804
Score = 43.9 bits (102), Expect = 4e-05
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Frame = +2
Query: 65 SHDQPVLCSAWKDDGTTVF-SGGCDKQVKMWPLLSGGQPMTVAMHDAPVKDIAWIP-EMS 122
SH L AW + + S DK+VK+W +++ +T+ H V+ +AW +
Sbjct: 362 SHTDSXLGLAWNKEYRNILASASADKRVKIWDVVAEKCDITMEHHTDKVQAVAWNHFQPQ 541
Query: 123 LLVTGSWDRTIKYWDTRQPN 142
+L+TGS+D T+ D R P+
Sbjct: 542 VLLTGSFDHTVALKDGRMPS 601
>AV413963
Length = 313
Score = 42.4 bits (98), Expect = 1e-04
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Frame = +2
Query: 66 HDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGG----QPMTVAMHDAPVKDIAWIPEM 121
H + V AW GT + SG D+ ++W + G + + + H V + W P+
Sbjct: 74 HKKKVHSVAWNCIGTKLASGSVDQTARIWHVEQHGHGKVKDIELKGHTDSVDQLCWDPKH 253
Query: 122 S-LLVTGSWDRTIKYWDTR 139
+ L+ T S D+T++ WD R
Sbjct: 254 ADLIATASGDKTVRLWDAR 310
Score = 30.8 bits (68), Expect = 0.35
Identities = 14/30 (46%), Positives = 19/30 (62%), Gaps = 1/30 (3%)
Frame = +2
Query: 23 SDSVSSLCFSPK-ANLLVATSWDNQVRCWE 51
+DSV LC+ PK A+L+ S D VR W+
Sbjct: 215 TDSVDQLCWDPKHADLIATASGDKTVRLWD 304
>TC16695 homologue to UP|Q94KS2 (Q94KS2) TGF-beta receptor-interacting
protein 1, partial (46%)
Length = 531
Score = 40.8 bits (94), Expect = 3e-04
Identities = 31/116 (26%), Positives = 49/116 (41%), Gaps = 2/116 (1%)
Frame = +3
Query: 54 RNVATAPKASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPMTVAMHDAPVK 113
R P H++P+ + DG +FS D +W +G + T H+ V
Sbjct: 66 RTTTMRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVW 245
Query: 114 DIAWIPEMSLLVTGSWDRTIKYWDTRQPNPVHTQQL--PERCYAMSVKHPLMVVGT 167
+ S L+TGS D+T K W+ + + T P R +SV L+V+ T
Sbjct: 246 CCDVSRDSSRLITGSADQTAKLWNVQTGQQLFTFNFDSPARSVDLSVGDKLVVITT 413
>TC10804 similar to PIR|T00593|T02480 sec13-related protein At2g30050 -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(42%)
Length = 657
Score = 40.4 bits (93), Expect = 4e-04
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Frame = +1
Query: 84 SGGCDKQVKMWPLLSGGQPM----TVAMHDAPVKDIAWIPEMSL----LVTGSWDRTIKY 135
SGGCD VK+W L G M + MH V+D+AW P + L + + S D +
Sbjct: 16 SGGCDNTVKVWKLNHGLWKMDCFPALQMHTDWVRDVAWAPHLGLPKSTIASASQDGKVII 195
Query: 136 WDTRQ 140
W Q
Sbjct: 196 WTVAQ 210
>BP078012
Length = 361
Score = 40.4 bits (93), Expect = 4e-04
Identities = 15/47 (31%), Positives = 29/47 (60%)
Frame = -3
Query: 91 VKMWPLLSGGQPMTVAMHDAPVKDIAWIPEMSLLVTGSWDRTIKYWD 137
V ++ L++G Q + H+APV+D +W P ++++ +WD I W+
Sbjct: 359 VFIYDLVTGAQVAKLDHHEAPVRDCSWHPYYPMMISSAWDGDIVRWE 219
>TC11250 homologue to UP|AAQ72359 (AAQ72359) B-type cell cycle switch
protein ccs52B, partial (28%)
Length = 564
Score = 39.3 bits (90), Expect = 0.001
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 10/125 (8%)
Frame = +2
Query: 30 CFSP-KANLLVATSW--DNQVRCWEVARNVATAPKASISHDQPVLCS-AWKDDGTTVFS- 84
C SP ++NLLV+ D +R W N + + +C+ AW + + S
Sbjct: 32 CLSPHQSNLLVSGGGTADRCIRFW----NTTNGHQLNHVDTGSQVCNLAWSKNVNEIVST 199
Query: 85 -GGCDKQVKMWPLLSGGQPMTVAMHDAPVKDIAWIPEMSLLVTGSWDRTIKYWDT----R 139
G Q+ +W S + T+ H V +A P+ +VTG+ D T+++W+ +
Sbjct: 200 HGYSQNQIMVWKYPSLSKVATLTGHSMRVLYLAMSPDGQTIVTGAGDETLRFWNVFPSMK 379
Query: 140 QPNPV 144
P PV
Sbjct: 380 TPAPV 394
>TC19491 similar to GB|AAP37692.1|30725340|BT008333 At4g29830 {Arabidopsis
thaliana;}, partial (39%)
Length = 527
Score = 38.1 bits (87), Expect = 0.002
Identities = 32/119 (26%), Positives = 48/119 (39%), Gaps = 7/119 (5%)
Frame = +1
Query: 26 VSSLCFSP-KANLLVATSWDNQVRCWEVARNVATAPKASISHDQPVLCSAWKDDGTTVFS 84
V SL +SP LL S D V ++ + H VLC DG + +
Sbjct: 25 VRSLVYSPYDPRLLFTASDDGNVHMYDAEGKALVGTMSG--HASWVLCVDVSPDGGAIAT 198
Query: 85 GGCDKQVKMWPLLSGGQPMTVAMHDAPVKDIAWIPEMSLLVTG------SWDRTIKYWD 137
G D+ V++W L T++ H V +A+ P V G S D++I +D
Sbjct: 199 GSSDRTVRLWDLAMRASVQTMSNHTDQVWGVAFRPPGGTDVRGGRLASVSDDKSISLYD 375
Score = 30.4 bits (67), Expect = 0.45
Identities = 19/69 (27%), Positives = 30/69 (42%)
Frame = +1
Query: 78 DGTTVFSGGCDKQVKMWPLLSGGQPMTVAMHDAPVKDIAWIPEMSLLVTGSWDRTIKYWD 137
D +F+ D V M+ T++ H + V + P+ + TGS DRT++ WD
Sbjct: 52 DPRLLFTASDDGNVHMYDAEGKALVGTMSGHASWVLCVDVSPDGGAIATGSSDRTVRLWD 231
Query: 138 TRQPNPVHT 146
V T
Sbjct: 232 LAMRASVQT 258
>TC9494 similar to PIR|T00593|T02480 sec13-related protein At2g30050 -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(40%)
Length = 627
Score = 38.1 bits (87), Expect = 0.002
Identities = 20/59 (33%), Positives = 29/59 (48%), Gaps = 8/59 (13%)
Frame = +3
Query: 86 GCDKQVKMWPLLSGGQPM----TVAMHDAPVKDIAWIPEMSL----LVTGSWDRTIKYW 136
GCD VK+W L G M + MH V+D+AW P++ L + + S D + W
Sbjct: 3 GCDNTVKVWKLTHGNWKMDCFPALHMHTDWVRDVAWAPDLGLPKSTIASASQDGKVIIW 179
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.132 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,432,447
Number of Sequences: 28460
Number of extensions: 116708
Number of successful extensions: 690
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of query: 344
length of database: 4,897,600
effective HSP length: 91
effective length of query: 253
effective length of database: 2,307,740
effective search space: 583858220
effective search space used: 583858220
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0314.9