TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0314.4
         (199 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP055633                                                               71  1e-13
AW719396                                                               29  0.62
AV768479                                                               29  0.62
AV419050                                                               29  0.62
TC19655                                                                27  2.4
BP085705                                                               27  3.1
TC13904 weakly similar to UP|Q9ZU51 (Q9ZU51) RING-H2 finger prot...    26  4.0
BP040430                                                               25  6.9
TC13749 similar to UP|Q9FKW9 (Q9FKW9) Alpha-mannosidase, partial...    25  6.9
TC10403 similar to UP|O80815 (O80815) T8F5.22 protein, partial (...    25  6.9
BP067532                                                               25  9.0
BP081237                                                               25  9.0
BP064891                                                               25  9.0
BG662351                                                               25  9.0
AV424389                                                               25  9.0
TC20136                                                                25  9.0
TC15019 UP|Q9FY16 (Q9FY16) Ferredoxin-nitrite reductase precurso...    25  9.0
BP069336                                                               25  9.0

>BP055633 
          Length = 528

 Score = 71.2 bits (173), Expect = 1e-13
 Identities = 35/79 (44%), Positives = 49/79 (61%)
 Frame = -2

Query: 117 WEPFKHALIRRFQPTLVQNPFGPLLSIKQKGSVMAYRESFEEAAAPMRGADREILKGVFL 176
           W  FK A++ +FQ T   +PF  LL++KQ+GSV  +   FE  A  ++G D E    +F+
Sbjct: 518 WTKFKEAMLEQFQLTSNSSPFAALLALKQEGSVEEFVGQFERFAGMLKGIDEEHYMDIFV 339

Query: 177 NGLQEEIRAEMKLYPAADL 195
           NGL+EEI AE+KLY    L
Sbjct: 338 NGLKEEIAAEIKLYEPKSL 282


>AW719396 
          Length = 492

 Score = 28.9 bits (63), Expect = 0.62
 Identities = 32/119 (26%), Positives = 49/119 (40%)
 Frame = +2

Query: 72  INRVERFFQLSRVGEEERLEMVMIAMEGKALGWFQWWEEQAPERAWEPFKHALIRRFQPT 131
           I  +E+   L R G   +  MV    +  A   +Q WE  + +R+WE    +L +  +  
Sbjct: 26  IRELEKALDLGR-GANPKGYMVEEIWQELAKAKYQEWERSSTKRSWE--LQSLKQACESA 196

Query: 132 LVQNPFGPLLSIKQKGSVMAYRESFEEAAAPMRGADREILKGVFLNGLQEEIRAEMKLY 190
           L +  F         GS M   E F + A        E L+GVF    + +I AE+  Y
Sbjct: 197 LKEKHF-------LDGSDM---EGFVDDATTTHLKQLEALEGVFNKAAEADIPAEVPDY 343


>AV768479 
          Length = 462

 Score = 28.9 bits (63), Expect = 0.62
 Identities = 27/109 (24%), Positives = 43/109 (38%), Gaps = 16/109 (14%)
 Frame = -2

Query: 55  GRRVDIPMFDGSDAYGWINRVERFFQLSRVGEEERLEMVMIAMEGKALGWFQWWEEQAPE 114
           G R  I  FDG   Y           +++V    R  +     + +ALG  +WWE++ P 
Sbjct: 455 GFRAPIGFFDGMAEY-----------ITKVAGFPRKGLPECGQKEEALGGLRWWEDKEPA 309

Query: 115 R-------AWEPFKHALIRRFQPTL--------VQNPFG-PLLSIKQKG 147
                     + +K   IRR   T+        V+N  G PL +++  G
Sbjct: 308 HVARLLHYCEDYYKKGFIRRLNETMRDTWHDRVVENVLGVPLTTMRPCG 162


>AV419050 
          Length = 409

 Score = 28.9 bits (63), Expect = 0.62
 Identities = 17/41 (41%), Positives = 21/41 (50%)
 Frame = +1

Query: 1  RTRGRSNTPRFRQASRERDREASSHSGSRTGSRFSDHSRER 41
          R R R    R R   R+RDR+ +    SR+ SR  DH R R
Sbjct: 31 RERRREKEERDR-GDRDRDRDRTRSKRSRSRSRSIDHGRSR 150


>TC19655 
          Length = 473

 Score = 26.9 bits (58), Expect = 2.4
 Identities = 12/34 (35%), Positives = 17/34 (49%)
 Frame = +1

Query: 104 WFQWWEEQAPERAWEPFKHALIRRFQPTLVQNPF 137
           W   W   +PE+AW P  H + R F P  + + F
Sbjct: 178 WSLLWSSHSPEKAW-PSLHLMPR*FHPRRLLHHF 276


>BP085705 
          Length = 358

 Score = 26.6 bits (57), Expect = 3.1
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -2

Query: 91  EMVMIAMEGKALG-WFQWWEEQAP 113
           EM M  M G  LG W++WW E  P
Sbjct: 309 EMQMTTMSGGGLGLWWRWWCEY*P 238


>TC13904 weakly similar to UP|Q9ZU51 (Q9ZU51) RING-H2 finger protein RHA2b,
           partial (32%)
          Length = 535

 Score = 26.2 bits (56), Expect = 4.0
 Identities = 7/26 (26%), Positives = 14/26 (52%)
 Frame = -3

Query: 107 WWEEQAPERAWEPFKHALIRRFQPTL 132
           WW   + +R W  ++   +R + P+L
Sbjct: 125 WWSHPSKQRRWNVWRQGSLRTWSPSL 48


>BP040430 
          Length = 516

 Score = 25.4 bits (54), Expect = 6.9
 Identities = 14/56 (25%), Positives = 24/56 (42%)
 Frame = -3

Query: 98  EGKALGWFQWWEEQAPERAWEPFKHALIRRFQPTLVQNPFGPLLSIKQKGSVMAYR 153
           E +AL     WE+   +  W PFK   +R     ++      L  +++   V AY+
Sbjct: 505 EQQALEVCSKWEKNLKDPQWNPFKTITVRGETQEIIDEDDEKLERLRKDVGVGAYK 338


>TC13749 similar to UP|Q9FKW9 (Q9FKW9) Alpha-mannosidase, partial (17%)
          Length = 618

 Score = 25.4 bits (54), Expect = 6.9
 Identities = 14/62 (22%), Positives = 28/62 (44%), Gaps = 14/62 (22%)
 Frame = +1

Query: 67  DAYGWINRVERFF-----QLSRVGEEERLEMVMIAME---------GKALGWFQWWEEQA 112
           D  GW+  V+++F      +     E  L+ V+ +++          +   + +WW EQ+
Sbjct: 157 DDVGWLKTVDQYFVGSNNSIQGTSIENVLDSVVASLQKDPNRKFVFAEMAFFHRWWVEQS 336

Query: 113 PE 114
           PE
Sbjct: 337 PE 342


>TC10403 similar to UP|O80815 (O80815) T8F5.22 protein, partial (15%)
          Length = 1392

 Score = 25.4 bits (54), Expect = 6.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 19  DREASSHSGSRTGSRFSDHSRERFDHPHRV 48
           DR+ SS  GSRTG     ++  R +HP  V
Sbjct: 723 DRDRSSTPGSRTGRADYRNNGNRDEHPSGV 812


>BP067532 
          Length = 369

 Score = 25.0 bits (53), Expect = 9.0
 Identities = 13/38 (34%), Positives = 19/38 (49%)
 Frame = -1

Query: 102 LGWFQWWEEQAPERAWEPFKHALIRRFQPTLVQNPFGP 139
           +G   ++ E  PE    P   +LIRRF  + + NP  P
Sbjct: 357 MGGIMYYLEYEPE-TMAPVPRSLIRRFLASRISNPSPP 247


>BP081237 
          Length = 371

 Score = 25.0 bits (53), Expect = 9.0
 Identities = 8/23 (34%), Positives = 13/23 (55%)
 Frame = -2

Query: 104 WFQWWEEQAPERAWEPFKHALIR 126
           W +W EE+  ++ W+P  H   R
Sbjct: 334 WKRWKEEEL*QKMWDPKLHCRFR 266


>BP064891 
          Length = 480

 Score = 25.0 bits (53), Expect = 9.0
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +2

Query: 71  WINRVERFFQLSRVGEEERLEMVMIAMEGKALGWFQWW 108
           W  +VER   L+R+G   +   +++++  K +G    W
Sbjct: 293 WYLKVERDHTLTRIGIVAQFTQILMSLIDKKIGTILTW 406


>BG662351 
          Length = 407

 Score = 25.0 bits (53), Expect = 9.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 107 WWEEQAPERAWEPFKHALIRRFQ 129
           WW  +   +AW  +K  L+RR Q
Sbjct: 335 WWCRKPRVKAWNNYKQPLMRRKQ 403


>AV424389 
          Length = 309

 Score = 25.0 bits (53), Expect = 9.0
 Identities = 14/38 (36%), Positives = 20/38 (51%)
 Frame = +3

Query: 115 RAWEPFKHALIRRFQPTLVQNPFGPLLSIKQKGSVMAY 152
           R W PF + ++    PTL  +P  P LS K+  SV  +
Sbjct: 108 RLWWPFHNPVMEAHGPTLHPSPV-PTLSCKKVPSVTLF 218


>TC20136 
          Length = 551

 Score = 25.0 bits (53), Expect = 9.0
 Identities = 12/39 (30%), Positives = 20/39 (50%)
 Frame = -1

Query: 7   NTPRFRQASRERDREASSHSGSRTGSRFSDHSRERFDHP 45
           N P F  + R+  + A+S +  R   RFS+  R +  +P
Sbjct: 416 NIPHFPLSQRQERKHANSGASKR*NLRFSELMRTKQGYP 300


>TC15019 UP|Q9FY16 (Q9FY16) Ferredoxin-nitrite reductase precursor  ,
           complete
          Length = 2098

 Score = 25.0 bits (53), Expect = 9.0
 Identities = 14/38 (36%), Positives = 21/38 (54%), Gaps = 1/38 (2%)
 Frame = +2

Query: 84  VGEEERLEMVMIAMEGKALGWF-QWWEEQAPERAWEPF 120
           VG +   E  ++  EG+A GW     + +A ERA+ PF
Sbjct: 131 VGAQSGGEKWVLGFEGRAQGWH*SAGKGEAGERAYGPF 244


>BP069336 
          Length = 428

 Score = 25.0 bits (53), Expect = 9.0
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -3

Query: 102 LGWFQWWEEQAPERAWEPFKHALIRRFQPT 131
           L W + W+E      WEP    L+ +   T
Sbjct: 309 LPWTRGWDESLDSFGWEPLHSELVLQLSTT 220


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,103,141
Number of Sequences: 28460
Number of extensions: 40773
Number of successful extensions: 298
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of query: 199
length of database: 4,897,600
effective HSP length: 86
effective length of query: 113
effective length of database: 2,450,040
effective search space: 276854520
effective search space used: 276854520
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)