TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0314.19
         (86 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP068235                                                               27  0.64
BP080089                                                               24  5.5
BF177718                                                               23  7.1
TC16995 similar to PIR|T05493|T05493 pathogenesis-related protei...    23  9.3
BP052854                                                               23  9.3
TC18471 weakly similar to UP|Q9SA38 (Q9SA38) F3O9.19 protein (At...    23  9.3

>BP068235 
          Length = 511

 Score = 26.9 bits (58), Expect = 0.64
 Identities = 17/47 (36%), Positives = 24/47 (50%), Gaps = 4/47 (8%)
 Frame = -2

Query: 30  GIDKVRFCKPVIAGDTLVMRMTLTKL----QKSFELAKMEGKAYVGG 72
           GID+V   +P       ++ MTL +     Q SFE++   GKAY  G
Sbjct: 384 GIDQVVMAQPWPEHAQTLLEMTLRRYKHGNQLSFEVSHFSGKAYQPG 244


>BP080089 
          Length = 392

 Score = 23.9 bits (50), Expect = 5.5
 Identities = 12/32 (37%), Positives = 19/32 (58%)
 Frame = -1

Query: 35  RFCKPVIAGDTLVMRMTLTKLQKSFELAKMEG 66
           R C P I+    +M+MTL  L + FE+  ++G
Sbjct: 320 RMC-PGISFGLQLMKMTLATLLQGFEIVTLDG 228


>BF177718 
          Length = 484

 Score = 23.5 bits (49), Expect = 7.1
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 2   LLQAMAQVGVLVMLQPEGGGSRENFFFVGIDKVRFCKPVIAGDTLVM 48
           +L   A++  L  LQP+GG    NF ++   K   C  +   +T V+
Sbjct: 93  MLMISAELENLTNLQPQGGCDDPNFSYLFKVKCGRCGELSQRETCVV 233


>TC16995 similar to PIR|T05493|T05493 pathogenesis-related protein 19K4.140
           - Arabidopsis thaliana {Arabidopsis thaliana;}, partial
           (22%)
          Length = 614

 Score = 23.1 bits (48), Expect = 9.3
 Identities = 13/28 (46%), Positives = 16/28 (56%)
 Frame = +2

Query: 3   LQAMAQVGVLVMLQPEGGGSRENFFFVG 30
           LQ +   G L+ LQP+G   RE   FVG
Sbjct: 284 LQ*LQLHGWLIWLQPQGVLQREAGIFVG 367


>BP052854 
          Length = 456

 Score = 23.1 bits (48), Expect = 9.3
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 44  DTLVMRMTLTKLQKSFELAKMEGKAYVGGEVVCEG 78
           DTL +  +    + S + A + G  YV  E++C G
Sbjct: 205 DTLHLHNSKPDKESSEDSAVLNGSCYVNLEMMCPG 309


>TC18471 weakly similar to UP|Q9SA38 (Q9SA38) F3O9.19 protein
           (At1g16390/F3O9_19), partial (12%)
          Length = 385

 Score = 23.1 bits (48), Expect = 9.3
 Identities = 10/15 (66%), Positives = 11/15 (72%)
 Frame = +2

Query: 71  GGEVVCEGEFLMAIG 85
           G EVVC G F +AIG
Sbjct: 110 GSEVVCYGVFGLAIG 154


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.325    0.142    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,092,897
Number of Sequences: 28460
Number of extensions: 9480
Number of successful extensions: 45
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of query: 86
length of database: 4,897,600
effective HSP length: 62
effective length of query: 24
effective length of database: 3,133,080
effective search space: 75193920
effective search space used: 75193920
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)