BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0310b.11
(371 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV415720 87 6e-18
BP082331 77 8e-16
BI419528 45 2e-05
TC15394 similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, partial (16%) 30 0.84
TC17886 weakly similar to UP|Q7YTC3 (Q7YTC3) Nkx2-1, partial (5%) 28 3.2
BP080476 27 7.1
AV768454 26 9.3
TC18783 similar to UP|Q9FNN8 (Q9FNN8) Cleft lip and palate assoc... 26 9.3
TC14644 similar to UP|APJ_XENLA (P79960) G protein-coupled recep... 26 9.3
TC8412 weakly similar to UP|Q9LW00 (Q9LW00) Genomic DNA, chromos... 26 9.3
>AV415720
Length = 404
Score = 86.7 bits (213), Expect = 6e-18
Identities = 45/114 (39%), Positives = 65/114 (56%)
Frame = +3
Query: 258 GEDLHDLVAKNFMGVAASLEGVVNNYLNCIEYERVPSKILTYQASDDVVYSGYRSALQST 317
GEDLH+ G+A S+E VN Y Y + + Y++S+D + GY++ L S
Sbjct: 3 GEDLHNSTIYKLEGLAKSIEACVNEYF----YGEIEASG-DYKSSEDPICKGYKAVLDSK 167
Query: 318 STEDALMGFAVWEPPHGRYKMLKYPWSNYVKVSGALRHCAFMVMAMHGCILSEI 371
ST++ L A WEP H RY ++PW YVKV LR + V+A+HGC+ +EI
Sbjct: 168 STDETLALHASWEPRHSRY-CHRFPWQQYVKVGAVLRQFGYTVVALHGCLRTEI 326
>BP082331
Length = 494
Score = 77.0 bits (188), Expect(2) = 8e-16
Identities = 33/36 (91%), Positives = 35/36 (96%)
Frame = +2
Query: 336 YKMLKYPWSNYVKVSGALRHCAFMVMAMHGCILSEI 371
YKML+YPW NYVKVSGALRHCAFMVMA+HGCILSEI
Sbjct: 23 YKMLRYPWKNYVKVSGALRHCAFMVMALHGCILSEI 130
Score = 22.7 bits (47), Expect(2) = 8e-16
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 329 WEPPHGRYKML 339
WEPPHG K L
Sbjct: 3 WEPPHGITKCL 35
>BI419528
Length = 371
Score = 45.1 bits (105), Expect = 2e-05
Identities = 21/54 (38%), Positives = 31/54 (56%), Gaps = 8/54 (14%)
Frame = +3
Query: 326 FAVWEPPHGRYKMLKYPWSNYVKVSGALRHCAFMVMAM--------HGCILSEI 371
FA WEP HG +K ++PWS Y+K+ R CA+ + A+ H CI++ I
Sbjct: 120 FARWEPGHGMFKF-RHPWSQYLKIGALSRQCAYRMEALKELLNSNTHVCIINYI 278
>TC15394 similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, partial (16%)
Length = 1093
Score = 29.6 bits (65), Expect = 0.84
Identities = 26/89 (29%), Positives = 41/89 (45%), Gaps = 3/89 (3%)
Frame = -2
Query: 63 SYRALSDRLVGAWKTTKRVAARAWEMGLSDPRKIVFAAKMGLALILISLLIF---LKTPF 119
S R +SD++ T+ R++ M A+++G AL + LL+F L F
Sbjct: 546 SGRRISDKVAVLKSTSFRISTTTACM----------ASRLGTALAFLPLLLFPWSLTNAF 397
Query: 120 EDLGRHSVWAILTVVTVFEFSIGATLSKG 148
EDL + L +V+ F FS+ L G
Sbjct: 396 EDLSVCFLLEALPLVSGFSFSVFRFLDAG 310
>TC17886 weakly similar to UP|Q7YTC3 (Q7YTC3) Nkx2-1, partial (5%)
Length = 491
Score = 27.7 bits (60), Expect = 3.2
Identities = 10/46 (21%), Positives = 25/46 (53%)
Frame = +2
Query: 174 QWEEIIVMVSIFIVGFCATYAKLYPTMKAYEYGFRVFLITYCYIIV 219
+W E + + I I+G+C + + ++ + YG+ I Y ++++
Sbjct: 338 KWGEEL-KIQIVILGYCRRFLFQWYCVRIFLYGYETICIIYLFLVI 472
>BP080476
Length = 355
Score = 26.6 bits (57), Expect = 7.1
Identities = 11/23 (47%), Positives = 16/23 (68%)
Frame = +3
Query: 108 LISLLIFLKTPFEDLGRHSVWAI 130
L+ L+ FL+ F + GRHS W+I
Sbjct: 228 LLDLV*FLRPHFSEHGRHSHWSI 296
>AV768454
Length = 611
Score = 26.2 bits (56), Expect = 9.3
Identities = 18/55 (32%), Positives = 27/55 (48%), Gaps = 5/55 (9%)
Frame = +1
Query: 70 RLVGAWKTTKRVAARAWEMGLSDPRKIVFAAKMGL-----ALILISLLIFLKTPF 119
+L+ KT K + R W MG + RK+ + G AL + +LLI + PF
Sbjct: 10 KLLSISKTNKCLPCRDWYMGKHEYRKVRVSTFNGP*HHT*ALCMYTLLIMNEYPF 174
>TC18783 similar to UP|Q9FNN8 (Q9FNN8) Cleft lip and palate associated
transmembrane protein-like, partial (20%)
Length = 406
Score = 26.2 bits (56), Expect = 9.3
Identities = 12/28 (42%), Positives = 17/28 (59%)
Frame = +1
Query: 326 FAVWEPPHGRYKMLKYPWSNYVKVSGAL 353
+AVW P R LKYP + +K +G+L
Sbjct: 46 YAVWGPESTRTLTLKYPPTESLKHNGSL 129
>TC14644 similar to UP|APJ_XENLA (P79960) G protein-coupled receptor APJ
homolog (Angiotensin receptor related protein)
(Mesenchyme-associated serpentine receptor), partial
(5%)
Length = 705
Score = 26.2 bits (56), Expect = 9.3
Identities = 13/45 (28%), Positives = 25/45 (54%)
Frame = +3
Query: 174 QWEEIIVMVSIFIVGFCATYAKLYPTMKAYEYGFRVFLITYCYII 218
+W +II + ++ FC TY L+P ++ Y + V L ++ +I
Sbjct: 477 RWWDIISIWFMYCCIFCRTYLVLFP---SFPYLYFVLLASFVLVI 602
>TC8412 weakly similar to UP|Q9LW00 (Q9LW00) Genomic DNA, chromosome 3, P1
clone: MSJ11, partial (39%)
Length = 1403
Score = 26.2 bits (56), Expect = 9.3
Identities = 14/39 (35%), Positives = 24/39 (60%), Gaps = 1/39 (2%)
Frame = -2
Query: 26 LSMKSSLIGYSQIGI-PLPESDDDNDGPPGSKNCCRFCS 63
+++ SLI +G+ P+P+S+ D GPPG ++CS
Sbjct: 358 VTLTFSLILADLLGVSPVPQSNSDAAGPPGC--AFKYCS 248
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.324 0.139 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,831,479
Number of Sequences: 28460
Number of extensions: 94583
Number of successful extensions: 630
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of query: 371
length of database: 4,897,600
effective HSP length: 92
effective length of query: 279
effective length of database: 2,279,280
effective search space: 635919120
effective search space used: 635919120
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0310b.11