BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0307.3
(443 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP034539 45 3e-05
TC9351 similar to UP|Q9ZUV7 (Q9ZUV7) At2g28150 protein, partial ... 41 3e-04
TC9350 similar to UP|Q9ZUV7 (Q9ZUV7) At2g28150 protein, partial ... 36 0.011
BP037005 32 0.16
TC9118 similar to UP|Q84JE4 (Q84JE4) Squamosa promoter binding l... 32 0.21
TC11270 similar to UP|Q9LM88 (Q9LM88) F2D10.15, partial (9%) 32 0.27
TC11202 30 0.80
TC9577 weakly similar to UP|ATPD_PEA (Q02758) ATP synthase delta... 29 1.4
CB829198 29 1.8
TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, ... 28 3.0
TC14970 similar to UP|O24294 (O24294) Legumin (Minor small) prec... 28 3.0
TC14667 homologue to UP|Q84P43 (Q84P43) Protein kinase Pti1, com... 28 4.0
AV409788 28 4.0
TC15987 similar to UP|Q9QY28 (Q9QY28) Espin (Fragment), partial ... 28 4.0
TC17497 UP|CAE45595 (CAE45595) S-receptor kinase-like protein 2,... 28 4.0
BP064697 27 5.2
TC13322 similar to UP|Q9ZS13 (Q9ZS13) RNA helicase (Fragment), p... 27 5.2
TC16062 similar to UP|Q84L60 (Q84L60) Branched-chain amino acid ... 27 6.8
BP039415 27 6.8
TC16415 similar to UP|Q9SAF0 (Q9SAF0) F3F19.19 protein (At1g1317... 27 6.8
>BP034539
Length = 423
Score = 44.7 bits (104), Expect = 3e-05
Identities = 23/39 (58%), Positives = 28/39 (70%)
Frame = -2
Query: 367 EEKEYFSGSLVEMESMKANHPVLKRSNSYNEERRSKLGV 405
E+KEYFSGSL+E + K P LKRSNSYN +R LG+
Sbjct: 278 EDKEYFSGSLIETQ--KVETPSLKRSNSYNADRYILLGL 168
>TC9351 similar to UP|Q9ZUV7 (Q9ZUV7) At2g28150 protein, partial (7%)
Length = 568
Score = 41.2 bits (95), Expect = 3e-04
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +3
Query: 89 RNYKSGYVWFDLALKDVIYPSEGGEYVLKGSELVE 123
R+YK+G+VW DL D P+ G + VLKGSEL +
Sbjct: 51 RSYKNGFVWHDLCEDDKSLPAHGNKNVLKGSELFD 155
>TC9350 similar to UP|Q9ZUV7 (Q9ZUV7) At2g28150 protein, partial (6%)
Length = 577
Score = 36.2 bits (82), Expect = 0.011
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +3
Query: 92 KSGYVWFDLALKDVIYPSEGGEYVLKGSELVE 123
K+G+VW DL D PS G + VLKGSEL +
Sbjct: 3 KNGFVWHDLCEDDKSLPSPGHKNVLKGSELFD 98
>BP037005
Length = 569
Score = 32.3 bits (72), Expect = 0.16
Identities = 21/79 (26%), Positives = 42/79 (52%)
Frame = +2
Query: 338 EEEEEEAVAMMMNRVSENPRLMLGNLQNAEEKEYFSGSLVEMESMKANHPVLKRSNSYNE 397
++EEEE ++E + G L+ +++K+ + ++ K H VL+ S+ NE
Sbjct: 299 DDEEEE--------INEEEK---GKLEISKDKK-----AIRLKDKKTKHLVLEGSSXVNE 430
Query: 398 ERRSKLGVEEVKLKKEMEE 416
+ + G E+ +LKK ++E
Sbjct: 431 DGKKTYGEEQEELKKALQE 487
>TC9118 similar to UP|Q84JE4 (Q84JE4) Squamosa promoter binding
like-protein, partial (16%)
Length = 779
Score = 32.0 bits (71), Expect = 0.21
Identities = 28/122 (22%), Positives = 47/122 (37%), Gaps = 7/122 (5%)
Frame = +2
Query: 141 HEPPETNYGYNAKSKVLSNRQQQKEAEEYEEYEEQEEEKEFTS-------STTTPHSRCS 193
H + Y Y +S+ + Q + + +Y+ +EK +S S + + S
Sbjct: 167 HSSSKDKYSYRGAKHGISDDEHQ-HSSHHHKYDSSSDEKHRSSRRRQREDSMSDHEHKHS 343
Query: 194 RGVSTEELGEDEDRHEALQNNTKTEKVVVTNNVSSRGNVTNVPPPMKNHSAAAASLAEKL 253
R E EDE RH + K+ V + G V MK+ + AS E+
Sbjct: 344 RRHKHETSSEDERRHRSRHTKHKSRSHVERESELEEGEV------MKSDKSQQASEVERA 505
Query: 254 NR 255
+R
Sbjct: 506 SR 511
>TC11270 similar to UP|Q9LM88 (Q9LM88) F2D10.15, partial (9%)
Length = 735
Score = 31.6 bits (70), Expect = 0.27
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +3
Query: 160 RQQQKEAEEYEEYEEQEEEKEFTSSTTTPHSRCSRGVSTEELGEDEDRHEALQNNTKTEK 219
+++ K E+ + E+EEE E TPH +RG S E ++ED E + E+
Sbjct: 297 KKKLKLVEKLNQGVEEEEEDEEDEEEQTPHP--TRGRSRVEHAQEEDEEEENGEEEEEEE 470
Query: 220 VVVTNN 225
VV +
Sbjct: 471 EVVVED 488
>TC11202
Length = 537
Score = 30.0 bits (66), Expect = 0.80
Identities = 21/56 (37%), Positives = 27/56 (47%)
Frame = +1
Query: 381 SMKANHPVLKRSNSYNEERRSKLGVEEVKLKKEMEEENRERKGGVKEKCIPIKKSS 436
+ K P LKRSNSYN + S+L +M E E V+ KCIP K +
Sbjct: 1 TQKVETPSLKRSNSYNADSGSRL---------QMIEHEGE---VVRAKCIPRKSKT 132
>TC9577 weakly similar to UP|ATPD_PEA (Q02758) ATP synthase delta chain,
chloroplast precursor , partial (54%)
Length = 627
Score = 29.3 bits (64), Expect = 1.4
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = +2
Query: 210 ALQNNTKT-EKVVVTNNVSSRGNVTNVPPPMKNHSAAAASLAEKLNRRVVVPVQSKQRFG 268
+LQ+ T + + + T N+ ++ + N+ P +S LN ++V S++ G
Sbjct: 80 SLQHATASIQAIPTTRNILTQKPILNLSLP--------SSTFTPLNLKLVSVAPSRRSGG 235
Query: 269 GELGTESATSAAPSRYSALLQLIACGSS 296
G LG SAA S SAL + + S
Sbjct: 236 GALGARMNASAATSYASALADVASSNKS 319
>CB829198
Length = 562
Score = 28.9 bits (63), Expect = 1.8
Identities = 26/101 (25%), Positives = 44/101 (42%), Gaps = 5/101 (4%)
Frame = +3
Query: 119 SELVEGCSE--RFQQLNVSNKNGIHEPPETNYGYNAKSKVLSNRQQQK---EAEEYEEYE 173
SEL+ E R LN + + E+++G + + R+Q + E + E
Sbjct: 57 SELIGRLREFLRSSDLNTTTTATVRRQLESDFGIDLSDRKAFIREQVDLFLQTEHQPQEE 236
Query: 174 EQEEEKEFTSSTTTPHSRCSRGVSTEELGEDEDRHEALQNN 214
EQ +++E + S+ S S EE E+ED +NN
Sbjct: 237 EQHDDQEEPQNDDVEESQHSD--SKEETEEEEDEDGDNENN 353
>TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, partial
(31%)
Length = 727
Score = 28.1 bits (61), Expect = 3.0
Identities = 17/69 (24%), Positives = 31/69 (44%)
Frame = +1
Query: 153 KSKVLSNRQQQKEAEEYEEYEEQEEEKEFTSSTTTPHSRCSRGVSTEELGEDEDRHEALQ 212
+++V + ++E EE E EE+EEE+E V E ED++ + L
Sbjct: 178 EAEVQEYEEVEEEVEEEVEEEEEEEEEEEEGEEEEEEEEEEEEVEAEAEEEDDEPIQKLL 357
Query: 213 NNTKTEKVV 221
E+++
Sbjct: 358 EPMGKEQII 384
Score = 28.1 bits (61), Expect = 3.0
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +1
Query: 151 NAKSKVLSNRQQQKEAEEYEEYEEQEEE-KEFTSSTTTPHSRCSRGVSTEELGEDEDRHE 209
+++S L + Q K E +EYEE EEE +E G EE E+E+ E
Sbjct: 133 SSQSAELPFKLQNKLEAEVQEYEEVEEEVEEEVEEEEEEEEEEEEGEEEEEEEEEEEEVE 312
Query: 210 A 210
A
Sbjct: 313 A 315
>TC14970 similar to UP|O24294 (O24294) Legumin (Minor small) precursor,
partial (51%)
Length = 1566
Score = 28.1 bits (61), Expect = 3.0
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 12/48 (25%)
Frame = +1
Query: 160 RQQQKEAEEYEEYEE------------QEEEKEFTSSTTTPHSRCSRG 195
RQ+ E EE EE EE +EEE+E S T P R SRG
Sbjct: 667 RQRHFEREEEEEREERGPRGRGKHWQREEEEEEEESRRTIPSRRESRG 810
>TC14667 homologue to UP|Q84P43 (Q84P43) Protein kinase Pti1, complete
Length = 1591
Score = 27.7 bits (60), Expect = 4.0
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = -1
Query: 212 QNNTKTEKVVVTNNVSSRGNVTNVPPPMKNHSA--AAASLAEKLNRRVVVPVQSKQRFGG 269
+NNTKT + ++S G ++ P HS+ A S L R+V + S F
Sbjct: 958 KNNTKTVDITFLCQLASHGIFWSMIPKSSQHSSRMKACSHVRGLIRKVEISYLSLVIFKD 779
Query: 270 ELGTESATSAAPSRYSALLQL 290
+ T S S SR + L+Q+
Sbjct: 778 KHVT*SDISVNNSRLNFLVQI 716
>AV409788
Length = 423
Score = 27.7 bits (60), Expect = 4.0
Identities = 26/106 (24%), Positives = 42/106 (39%)
Frame = -3
Query: 238 PMKNHSAAAASLAEKLNRRVVVPVQSKQRFGGELGTESATSAAPSRYSALLQLIACGSSG 297
P N+S + L R P G +G AT+ A L+ L ++G
Sbjct: 355 PSPNNSNFQLGTSIMLRFRRKQPFWRVNTHVGNIGI*GATNPA------LVGLDETATAG 194
Query: 298 PEFKARTQQEPRVSSVGTTASKQRQSVDRRDQKAFMMSCEEEEEEE 343
+ R S T +++ + RR+++ CEEEEE+E
Sbjct: 193 DKEPDRVSSSCGEGSCRRTVNQRSHVLKRREEECGGCLCEEEEEDE 56
>TC15987 similar to UP|Q9QY28 (Q9QY28) Espin (Fragment), partial (4%)
Length = 552
Score = 27.7 bits (60), Expect = 4.0
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 388 VLKRSNSYNEERRSKLGVEEVKLKKEMEEENRE 420
V+K +N +EE S EE +K EEENRE
Sbjct: 131 VVKSTNHNHEEEHSNSNGEEHMTEKLEEEENRE 229
>TC17497 UP|CAE45595 (CAE45595) S-receptor kinase-like protein 2, complete
Length = 2946
Score = 27.7 bits (60), Expect = 4.0
Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Frame = -3
Query: 27 VIKPARKVQ----VVYYLFRNGLLEHPHFMELTLLPNQPLRLKDVFDRLMVLRGSGMPLQ 82
+I P R VQ ++YYL +N L LLPNQ LR + PL
Sbjct: 1732 LISPCRPVQSHLHLIYYLEKNDLWH*RWLKNQILLPNQCLRPLSCPSSDL*FLFHLRPLS 1553
Query: 83 YSWSSKRNYKSGYVWFDLALKDVIYPSEG 111
YS SS Y+W I+P++G
Sbjct: 1552 YSSSSV------YMW--------IWPTQG 1508
>BP064697
Length = 439
Score = 27.3 bits (59), Expect = 5.2
Identities = 12/38 (31%), Positives = 21/38 (54%)
Frame = -2
Query: 385 NHPVLKRSNSYNEERRSKLGVEEVKLKKEMEEENRERK 422
NHP + YN+E +S + + K++ E E R++K
Sbjct: 285 NHPKFLKFACYNKENQSSEPLFQCKMQLETHAEKRKKK 172
>TC13322 similar to UP|Q9ZS13 (Q9ZS13) RNA helicase (Fragment), partial (7%)
Length = 528
Score = 27.3 bits (59), Expect = 5.2
Identities = 14/52 (26%), Positives = 25/52 (47%)
Frame = +2
Query: 158 SNRQQQKEAEEYEEYEEQEEEKEFTSSTTTPHSRCSRGVSTEELGEDEDRHE 209
S++Q + E EE EEQ + + + + +R +R +GE+E E
Sbjct: 104 SSQQPRTPIREEEEKEEQRQASKRRENQSQKEARGTRQSKRHRIGEEEKEEE 259
>TC16062 similar to UP|Q84L60 (Q84L60) Branched-chain amino acid
aminotransferase-like protein , partial (67%)
Length = 1607
Score = 26.9 bits (58), Expect = 6.8
Identities = 17/46 (36%), Positives = 26/46 (55%), Gaps = 5/46 (10%)
Frame = -3
Query: 154 SKVLSNRQQQKEAEEY-EEYEEQEE----EKEFTSSTTTPHSRCSR 194
S+V + Q K+A + +E E+QEE KE TSS+ + C+R
Sbjct: 285 SRVAQSHHQPKQAISHLQELEDQEEVKEGSKEMTSSSHGAEAYCTR 148
>BP039415
Length = 449
Score = 26.9 bits (58), Expect = 6.8
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Frame = +2
Query: 159 NRQQQKEAEEYEEYEEQEEEKEFTSSTTTPHSRCSRGVSTEEL---GEDEDRHEALQNNT 215
N+Q++KE E E +E+QEE++E T P S ++ G + L+NN+
Sbjct: 41 NKQREKE*TEME-FEDQEEQEEELCMATAPSYDSLTHPSRVKMPGGGAEPIMGHPLRNNS 217
Query: 216 KTEKVVVTNNVSSRGNVTNVPPPMKNHS 243
+NN +++G +KNH+
Sbjct: 218 -------SNNGAAKGRYREC---LKNHA 271
>TC16415 similar to UP|Q9SAF0 (Q9SAF0) F3F19.19 protein
(At1g13170/F3F19_19), partial (12%)
Length = 502
Score = 26.9 bits (58), Expect = 6.8
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +1
Query: 7 RPHRCSSRDTSPDRAKICRKVI 28
RP RC D SPD K R V+
Sbjct: 196 RPERCQKEDASPDGLKRTRMVV 261
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.310 0.126 0.351
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,939,926
Number of Sequences: 28460
Number of extensions: 85295
Number of successful extensions: 530
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of query: 443
length of database: 4,897,600
effective HSP length: 93
effective length of query: 350
effective length of database: 2,250,820
effective search space: 787787000
effective search space used: 787787000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0307.3