TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0307.15
         (326 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP054134                                                               30  0.42
AV410659                                                               28  1.6
AV409106                                                               27  3.6
TC19799 weakly similar to PIR|PQ0476|PQ0476 pistil extensin-like...    27  3.6
TC18946 similar to UP|Q8H0Z6 (Q8H0Z6) At1g71710/F14O23_9, partia...    26  7.9

>BP054134 
          Length = 545

 Score = 30.4 bits (67), Expect = 0.42
 Identities = 18/46 (39%), Positives = 29/46 (62%), Gaps = 2/46 (4%)
 Frame = -1

Query: 69  VSQQKGQNPCLELPFCGDDSLGNVSSQE--SNLQLPSGGLEEKNLL 112
           VS+Q  Q    E+  CG +S+GNVS+++  +++ L  G L+EK  L
Sbjct: 524 VSEQILQPQTSEVGHCGGNSIGNVSAEKKRNHVSLGQGFLDEKEEL 387


>AV410659 
          Length = 397

 Score = 28.5 bits (62), Expect = 1.6
 Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 9/125 (7%)
 Frame = +1

Query: 189 SVLQGNAGPTSAAAAAD------LLKSCTCSFCS---KAAHIWSDLHYQDVKGRLSALKK 239
           SV+ G     S  A AD      + K C  +      K+AHIW +L Y        ++  
Sbjct: 31  SVVAGAGASASEGALADQVMAANVAKECLLAAIKADVKSAHIWGNLAY------AFSISG 192

Query: 240 SQKDASNAVQKLSEIKDSVMPDQQSSSESSKLELALMHQWKSLFDFMENTFAEESRQLES 299
             + +S  ++K ++++ + M  + + +     E         L  F  N  A   R  +S
Sbjct: 193 DHRSSSKCLEKAAKLEPNCMSTRYAVATHRMKEAERSQDPSELLSFGGNEMASIIRDGDS 372

Query: 300 SFETL 304
           S   L
Sbjct: 373 SLVEL 387


>AV409106 
          Length = 349

 Score = 27.3 bits (59), Expect = 3.6
 Identities = 13/31 (41%), Positives = 20/31 (63%)
 Frame = +3

Query: 272 ELALMHQWKSLFDFMENTFAEESRQLESSFE 302
           +L   +Q K +F+F++N F E S  L+ SFE
Sbjct: 249 QLRQPNQVKVIFEFLKNGFQEISSSLDLSFE 341


>TC19799 weakly similar to PIR|PQ0476|PQ0476 pistil extensin-like protein
           (clone pMG08) - common tobacco               
           (fragment) {Nicotiana tabacum;} , partial (12%)
          Length = 601

 Score = 27.3 bits (59), Expect = 3.6
 Identities = 22/67 (32%), Positives = 32/67 (46%)
 Frame = +1

Query: 70  SQQKGQNPCLELPFCGDDSLGNVSSQESNLQLPSGGLEEKNLLGGAVVSGPTEVPVAVLG 129
           SQ +G+  C+E+  CG +  G   + ESN     GG   + LL G        V  AV+ 
Sbjct: 16  SQIEGERVCVEVRACGVEQGGGGVAGESN---GGGGSNGQGLLRGVQRCVSLRVQEAVV- 183

Query: 130 EIGQGRP 136
            +G+ RP
Sbjct: 184 -VGRIRP 201


>TC18946 similar to UP|Q8H0Z6 (Q8H0Z6) At1g71710/F14O23_9, partial (4%)
          Length = 461

 Score = 26.2 bits (56), Expect = 7.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 207 LKSCTCSFCSKAAHIWSDLHYQDVKGRLSA 236
           L  C C F      +W DLH++   G+LSA
Sbjct: 350 LIDCRCIFLM----LWCDLHFKTFHGKLSA 427


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.311    0.129    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,155,234
Number of Sequences: 28460
Number of extensions: 65203
Number of successful extensions: 272
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of query: 326
length of database: 4,897,600
effective HSP length: 91
effective length of query: 235
effective length of database: 2,307,740
effective search space: 542318900
effective search space used: 542318900
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)