TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0306.6
         (510 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8275 homologue to UP|Q94C02 (Q94C02) Myo-inositol-1-phosphate ...  1015  0.0
TC20029 homologue to UP|Q94G22 (Q94G22) 1L-myo-inositol-1-phosph...   284  3e-77
TC16611 homologue to GB|AAA85390.1|1161312|ATU04876 myo-inositol...   202  8e-53
AV408247                                                               30  0.94
AV408190                                                               29  1.6
TC8213                                                                 28  2.7
TC16467 UP|NUCC_LOTJA (Q9BBN8) NAD(P)H-quinone oxidoreductase ch...    27  6.1

>TC8275 homologue to UP|Q94C02 (Q94C02) Myo-inositol-1-phosphate synthase
           , complete
          Length = 1889

 Score = 1015 bits (2624), Expect = 0.0
 Identities = 510/510 (100%), Positives = 510/510 (100%)
 Frame = +2

Query: 1   MFIENFKVESPNVKYTETEIQSVYNYETTELVHENRNGSYQWIVKPKSVKYEFKTSTNVP 60
           MFIENFKVESPNVKYTETEIQSVYNYETTELVHENRNGSYQWIVKPKSVKYEFKTSTNVP
Sbjct: 113 MFIENFKVESPNVKYTETEIQSVYNYETTELVHENRNGSYQWIVKPKSVKYEFKTSTNVP 292

Query: 61  KLGVMLVGWGGNNGSTLTGGVIANKEGISWATKDKIERANYFGSLTQASAIRVGSFQGEE 120
           KLGVMLVGWGGNNGSTLTGGVIANKEGISWATKDKIERANYFGSLTQASAIRVGSFQGEE
Sbjct: 293 KLGVMLVGWGGNNGSTLTGGVIANKEGISWATKDKIERANYFGSLTQASAIRVGSFQGEE 472

Query: 121 IYAPFKSLLPMVNPDDVVFGGWDISDMNLADAMGRARVFDIDLQKQLRPYMESMVPLPGI 180
           IYAPFKSLLPMVNPDDVVFGGWDISDMNLADAMGRARVFDIDLQKQLRPYMESMVPLPGI
Sbjct: 473 IYAPFKSLLPMVNPDDVVFGGWDISDMNLADAMGRARVFDIDLQKQLRPYMESMVPLPGI 652

Query: 181 YDPDFIAANQGDRANNVIKGTKKEQIQQIIKDIKEFKEASKVDRVVVLWTANTERYSNLV 240
           YDPDFIAANQGDRANNVIKGTKKEQIQQIIKDIKEFKEASKVDRVVVLWTANTERYSNLV
Sbjct: 653 YDPDFIAANQGDRANNVIKGTKKEQIQQIIKDIKEFKEASKVDRVVVLWTANTERYSNLV 832

Query: 241 VGLNDTMENLLASVDRNEAEISPSTLYAIACVMENIPFINGSPQNTFVPGLIDLAIKKNS 300
           VGLNDTMENLLASVDRNEAEISPSTLYAIACVMENIPFINGSPQNTFVPGLIDLAIKKNS
Sbjct: 833 VGLNDTMENLLASVDRNEAEISPSTLYAIACVMENIPFINGSPQNTFVPGLIDLAIKKNS 1012

Query: 301 LIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLGNNDGMNLSAPQTFRSKEISKS 360
           LIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLGNNDGMNLSAPQTFRSKEISKS
Sbjct: 1013LIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLGNNDGMNLSAPQTFRSKEISKS 1192

Query: 361 NVVDDMVNSNAILYEPGEHPDHVVVIKYVPYVADSKRAMDEYTSEIFMGGKNTIVLHNTC 420
           NVVDDMVNSNAILYEPGEHPDHVVVIKYVPYVADSKRAMDEYTSEIFMGGKNTIVLHNTC
Sbjct: 1193NVVDDMVNSNAILYEPGEHPDHVVVIKYVPYVADSKRAMDEYTSEIFMGGKNTIVLHNTC 1372

Query: 421 EDSLLAAPIILDLVLLAELSTRIQFKSEAEDKFHSFHPVATILSYLTKAPLVPPGTPVVN 480
           EDSLLAAPIILDLVLLAELSTRIQFKSEAEDKFHSFHPVATILSYLTKAPLVPPGTPVVN
Sbjct: 1373EDSLLAAPIILDLVLLAELSTRIQFKSEAEDKFHSFHPVATILSYLTKAPLVPPGTPVVN 1552

Query: 481 ALSKQRAMLENILRACVGLAPENNMILEYK 510
           ALSKQRAMLENILRACVGLAPENNMILEYK
Sbjct: 1553ALSKQRAMLENILRACVGLAPENNMILEYK 1642


>TC20029 homologue to UP|Q94G22 (Q94G22) 1L-myo-inositol-1-phosphate
           synthase (Fragment), partial (31%)
          Length = 506

 Score =  284 bits (726), Expect = 3e-77
 Identities = 133/144 (92%), Positives = 142/144 (98%)
 Frame = +3

Query: 1   MFIENFKVESPNVKYTETEIQSVYNYETTELVHENRNGSYQWIVKPKSVKYEFKTSTNVP 60
           MFIE+FKVESPNVKYTETEIQSVYNYETTELVHEN+N +YQW+VKPK+VKYEFKT TNVP
Sbjct: 75  MFIESFKVESPNVKYTETEIQSVYNYETTELVHENKNNAYQWVVKPKTVKYEFKTKTNVP 254

Query: 61  KLGVMLVGWGGNNGSTLTGGVIANKEGISWATKDKIERANYFGSLTQASAIRVGSFQGEE 120
           KLGVMLVGWGGNNGSTLTGGVIANKEGISWATKDKI+++NYFGSLTQASAIRVGSFQGEE
Sbjct: 255 KLGVMLVGWGGNNGSTLTGGVIANKEGISWATKDKIQQSNYFGSLTQASAIRVGSFQGEE 434

Query: 121 IYAPFKSLLPMVNPDDVVFGGWDI 144
           IYAPFKSLLPMVNPDD+VFGGWDI
Sbjct: 435 IYAPFKSLLPMVNPDDIVFGGWDI 506


>TC16611 homologue to GB|AAA85390.1|1161312|ATU04876
           myo-inositol-1-phosphate synthase {Arabidopsis
           thaliana;} , partial (21%)
          Length = 527

 Score =  202 bits (515), Expect = 8e-53
 Identities = 100/107 (93%), Positives = 105/107 (97%)
 Frame = +2

Query: 404 SEIFMGGKNTIVLHNTCEDSLLAAPIILDLVLLAELSTRIQFKSEAEDKFHSFHPVATIL 463
           +EIFMGGKNTIV+HNTCEDSLLAAPIILDLVLLAELSTRIQFK+E E KFHSFHPVATIL
Sbjct: 8   AEIFMGGKNTIVMHNTCEDSLLAAPIILDLVLLAELSTRIQFKAENESKFHSFHPVATIL 187

Query: 464 SYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 510
           SYLTKAPLVPPGTPVVNALSKQRAMLENI+RACVGLAPENNMI+EYK
Sbjct: 188 SYLTKAPLVPPGTPVVNALSKQRAMLENIMRACVGLAPENNMIMEYK 328


>AV408247 
          Length = 394

 Score = 30.0 bits (66), Expect = 0.94
 Identities = 18/44 (40%), Positives = 23/44 (51%), Gaps = 4/44 (9%)
 Frame = +1

Query: 440 STRIQFKSEAEDKFHS----FHPVATILSYLTKAPLVPPGTPVV 479
           +TR  F  ++    HS    F P+A  LS LT  P+ PP  PVV
Sbjct: 190 TTRSPFPIKSSPVLHSIPIIFDPIALFLS-LTPPPMAPPAAPVV 318


>AV408190 
          Length = 382

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = -1

Query: 46  PKSVKYEFKTSTNVPKLGVMLVGWGGNNGSTLTGGVIANKEGISWATKDKIERA 99
           P+ +  E   S +V + G+ +VG GG+  S + G V   +EG+  A +D I  A
Sbjct: 241 PEVLVGELAASGSVDEGGLAMVGAGGDESSDV*GVVWREREGLPLAVED*IGAA 80


>TC8213 
          Length = 935

 Score = 28.5 bits (62), Expect = 2.7
 Identities = 26/59 (44%), Positives = 28/59 (47%)
 Frame = +1

Query: 416 LHNTCEDSLLAAPIILDLVLLAELSTRIQFKSEAEDKFHSFHPVATILSYLTKAPLVPP 474
           LHN    SLL    IL L  L  L TR Q K  A    HSF+ V  IL +  K  L PP
Sbjct: 1   LHNVTYCSLLTW--ILILAWLPHLFTRGQTKL-AHHAQHSFNWVFLILGWSYKTSLCPP 168


>TC16467 UP|NUCC_LOTJA (Q9BBN8) NAD(P)H-quinone oxidoreductase chain H,
            chloroplast  (NAD(P)H dehydrogenase, chain H)
            (NADH-plastoquinone oxidoreductase 49 kDa subunit) ,
            complete
          Length = 2407

 Score = 27.3 bits (59), Expect = 6.1
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +3

Query: 57   TNVPKLGVMLVGWGGNNGSTLTGGVIANKEGISW 90
            +++  +G+++ G+G NN  +  GG+ A  + IS+
Sbjct: 1668 SSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISY 1769


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.316    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,115,895
Number of Sequences: 28460
Number of extensions: 82776
Number of successful extensions: 408
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of query: 510
length of database: 4,897,600
effective HSP length: 94
effective length of query: 416
effective length of database: 2,222,360
effective search space: 924501760
effective search space used: 924501760
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)