BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0306.5
(165 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC11885 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, parti... 62 5e-11
TC18927 similar to PIR|AI2934|AI2934 chromate transport protein ... 57 2e-09
BI418821 57 2e-09
TC10011 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, par... 45 6e-06
TC9521 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, part... 45 8e-06
TC13053 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, parti... 37 0.001
AV773507 35 0.005
TC17853 similar to UP|Q42412 (Q42412) RNA-binding protein RZ-1, ... 35 0.007
AV421607 35 0.009
TC18003 similar to PIR|T05112|T05112 splicing factor 9G8-like SR... 34 0.015
BP079571 27 0.031
TC11095 similar to PIR|T05112|T05112 splicing factor 9G8-like SR... 32 0.072
AV420911 31 0.094
TC13132 similar to UP|Q9FJA1 (Q9FJA1) Similarity to retroelement... 30 0.16
BP042810 30 0.16
TC19469 weakly similar to UP|Q9LP32 (Q9LP32) T9L6.1 protein, par... 30 0.21
AV776569 28 0.61
BP065763 28 0.61
BP049972 28 0.61
TC20129 homologue to GB|AAF04891.1|6175165|ATAC011437 Mutator-li... 28 0.61
>TC11885 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, partial (26%)
Length = 555
Score = 62.0 bits (149), Expect = 5e-11
Identities = 25/54 (46%), Positives = 34/54 (62%)
Frame = +2
Query: 83 CYRCKKVGHYTNKCPDGGPLCFNCGEIGHYASKCKIKGRLCFNCNQPGHFSRDC 136
C CK+ GH+ +CP+ +C NCG GH AS+C K LC+NC +PGH + C
Sbjct: 344 CKNCKRPGHFARECPNVA-ICHNCGLPGHIASECTTKS-LCWNCKEPGHMASSC 499
Score = 38.9 bits (89), Expect = 5e-04
Identities = 23/83 (27%), Positives = 28/83 (33%)
Frame = +2
Query: 38 CFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGNKTSGKIVTCYRCKKVGHYTNKCP 97
C C R GH A C + C+ C GH ++C
Sbjct: 344 CKNCKRPGHFARECPN--------------------------VAICHNCGLPGHIASECT 445
Query: 98 DGGPLCFNCGEIGHYASKCKIKG 120
LC+NC E GH AS C G
Sbjct: 446 TKS-LCWNCKEPGHMASSCPNDG 511
Score = 38.5 bits (88), Expect = 6e-04
Identities = 15/35 (42%), Positives = 20/35 (56%)
Frame = +2
Query: 102 LCFNCGEIGHYASKCKIKGRLCFNCNQPGHFSRDC 136
LC NC GH+A +C +C NC PGH + +C
Sbjct: 341 LCKNCKRPGHFARECP-NVAICHNCGLPGHIASEC 442
Score = 37.7 bits (86), Expect = 0.001
Identities = 22/87 (25%), Positives = 30/87 (34%)
Frame = +2
Query: 14 KDVTCFCCGKFGQFANNCSVIGPRCFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTG 73
+D C C + G FA C + C C GH+A C T
Sbjct: 332 RDNLCKNCKRPGHFARECPNVAI-CHNCGLPGHIASECTTKS------------------ 454
Query: 74 NKTSGKIVTCYRCKKVGHYTNKCPDGG 100
C+ CK+ GH + CP+ G
Sbjct: 455 --------LCWNCKEPGHMASSCPNDG 511
Score = 32.7 bits (73), Expect = 0.032
Identities = 15/38 (39%), Positives = 21/38 (54%)
Frame = +2
Query: 119 KGRLCFNCNQPGHFSRDCKAPKGESSGNTGKGKQLAAE 156
+ LC NC +PGHF+R+C P N G +A+E
Sbjct: 332 RDNLCKNCKRPGHFAREC--PNVAICHNCGLPGHIASE 439
>TC18927 similar to PIR|AI2934|AI2934 chromate transport protein chrA
[imported] - Agrobacterium tumefaciens
(strain C58, Dupont) {Agrobacterium tumefaciens;},
partial (6%)
Length = 561
Score = 56.6 bits (135), Expect = 2e-09
Identities = 34/111 (30%), Positives = 48/111 (42%), Gaps = 10/111 (9%)
Frame = -2
Query: 65 GNDATGGTGNKTSGKIVTCYRCKKVGHYTNKCPDGGPLCFNCGEIGHYASKCKIKGRLCF 124
GN T + TS + C+RC K GH+ N+CPD +C+
Sbjct: 377 GNFVPRPTQSDTSE--IVCHRCSKKGHFANRCPD----------------------LVCW 270
Query: 125 NCNQPGHFSRDCKAPKGESSGN----------TGKGKQLAAEERIHTKEGA 165
NC + GH +DC PK E++ N KGK+ A R++T GA
Sbjct: 269 NCQKTGHSGKDCTNPKVEAATNAIAARRPAPAANKGKRPVASARVYTVSGA 117
Score = 33.1 bits (74), Expect = 0.025
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 15 DVTCFCCGKFGQFANNCSVIGPRCFKCNREGHLAVNC 51
++ C C K G FAN C + C+ C + GH +C
Sbjct: 338 EIVCHRCSKKGHFANRCPDL--VCWNCQKTGHSGKDC 234
>BI418821
Length = 614
Score = 56.6 bits (135), Expect = 2e-09
Identities = 30/87 (34%), Positives = 34/87 (38%), Gaps = 15/87 (17%)
Frame = +2
Query: 65 GNDATGGTGNKTSGKIVTCYRCKKVGHYTNKCP--------DGGPLCFNCGEIGHYASKC 116
G GG G G CY C GH C GG C+NCG+ GH A C
Sbjct: 347 GERRNGGGGGGGGGG---CYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLARDC 517
Query: 117 KIK-------GRLCFNCNQPGHFSRDC 136
G C+NC GH +RDC
Sbjct: 518 NRSNNNSGGGGAGCYNCGDTGHLARDC 598
Score = 49.7 bits (117), Expect = 3e-07
Identities = 28/89 (31%), Positives = 34/89 (37%), Gaps = 7/89 (7%)
Frame = +2
Query: 35 GPRCFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGNKTSGKIVTCYRCKKVGHYTN 94
G C+ C GHLA +C + N+ GG G CY C GH
Sbjct: 383 GGGCYNCGDTGHLARDCH-----------RSNNNGGGGGG------AACYNCGDAGHLAR 511
Query: 95 KCP-------DGGPLCFNCGEIGHYASKC 116
C GG C+NCG+ GH A C
Sbjct: 512 DCNRSNNNSGGGGAGCYNCGDTGHLARDC 598
Score = 48.5 bits (114), Expect = 6e-07
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Frame = +2
Query: 99 GGPLCFNCGEIGHYASKCKIK--------GRLCFNCNQPGHFSRDCKAPKGESSG 145
GG C+NCG+ GH A C G C+NC GH +RDC S G
Sbjct: 380 GGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSGG 544
Score = 30.8 bits (68), Expect = 0.12
Identities = 10/26 (38%), Positives = 12/26 (45%)
Frame = +2
Query: 123 CFNCNQPGHFSRDCKAPKGESSGNTG 148
C+NC GH +RDC G G
Sbjct: 392 CYNCGDTGHLARDCHRSNNNGGGGGG 469
>TC10011 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, partial (62%)
Length = 684
Score = 45.1 bits (105), Expect = 6e-06
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 97 PDGGPLCFNCGEIGHYASKCKIKG--RLCFNCNQPGHFSRDCKAPKGESSGNTGK 149
P G CFNCG GH+A CK C+ C GH R+CK ++ T K
Sbjct: 353 PPGSGRCFNCGLDGHWARDCKAGDWKNKCYRCGDRGHVERNCKNSPKKNEWQTWK 517
Score = 34.3 bits (77), Expect = 0.011
Identities = 14/37 (37%), Positives = 20/37 (53%), Gaps = 2/37 (5%)
Frame = +2
Query: 18 CFCCGKFGQFANNCSVIG--PRCFKCNREGHLAVNCK 52
CF CG G +A +C +C++C GH+ NCK
Sbjct: 371 CFNCGLDGHWARDCKAGDWKNKCYRCGDRGHVERNCK 481
Score = 33.9 bits (76), Expect = 0.015
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +2
Query: 55 QGGPSDSKMKGNDATGGTGNKT-SGKIVTCYRCKKVGHYTNKCPDGG--PLCFNCGEIGH 111
+GGP +GN G G SG+ C+ C GH+ C G C+ CG+ GH
Sbjct: 308 KGGP-----RGNREYLGRGPPPGSGR---CFNCGLDGHWARDCKAGDWKNKCYRCGDRGH 463
Query: 112 YASKCK 117
CK
Sbjct: 464 VERNCK 481
Score = 31.2 bits (69), Expect = 0.094
Identities = 19/60 (31%), Positives = 21/60 (34%)
Frame = +2
Query: 37 RCFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGNKTSGKIVTCYRCKKVGHYTNKC 96
RCF C +GH A +CK G NK CYRC GH C
Sbjct: 368 RCFNCGLDGHWARDCK----------------AGDWKNK-------CYRCGDRGHVERNC 478
>TC9521 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, partial (56%)
Length = 598
Score = 44.7 bits (104), Expect = 8e-06
Identities = 20/47 (42%), Positives = 26/47 (54%), Gaps = 3/47 (6%)
Frame = +1
Query: 97 PDGGPLCFNCGEIGHYASKCKIKG--RLCFNCNQPGHFSRDCK-APK 140
P G CFNCG GH+A CK C+ C + GH ++CK +PK
Sbjct: 373 PPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPK 513
Score = 36.6 bits (83), Expect = 0.002
Identities = 27/102 (26%), Positives = 36/102 (34%), Gaps = 6/102 (5%)
Frame = +1
Query: 56 GGPSDSKMKGNDATGGTGNKTSGKIVTCYRCKKVGHYTNKCPDGG--PLCFNCGEIGHYA 113
G D + G G+G C+ C GH+ C G C+ CGE GH
Sbjct: 334 GRDRDREYMGRGPPPGSGR--------CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIE 489
Query: 114 SKCKIKGRLCFNCNQPGHFSR----DCKAPKGESSGNTGKGK 151
CK N P SR D ++P S G+ +
Sbjct: 490 KNCK---------NSPKKLSRHPRSDSRSPVRSRSPRRGRSR 588
Score = 35.4 bits (80), Expect = 0.005
Identities = 14/37 (37%), Positives = 20/37 (53%), Gaps = 2/37 (5%)
Frame = +1
Query: 18 CFCCGKFGQFANNCSVIG--PRCFKCNREGHLAVNCK 52
CF CG G +A +C +C++C GH+ NCK
Sbjct: 391 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCK 501
Score = 31.6 bits (70), Expect = 0.072
Identities = 19/60 (31%), Positives = 22/60 (36%)
Frame = +1
Query: 37 RCFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGNKTSGKIVTCYRCKKVGHYTNKC 96
RCF C +GH A +CK G NK CYRC + GH C
Sbjct: 388 RCFNCGIDGHWARDCK----------------AGDWKNK-------CYRCGERGHIEKNC 498
>TC13053 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, partial (9%)
Length = 450
Score = 37.4 bits (85), Expect = 0.001
Identities = 14/36 (38%), Positives = 20/36 (54%)
Frame = +3
Query: 81 VTCYRCKKVGHYTNKCPDGGPLCFNCGEIGHYASKC 116
V C C+++GH + C +C NCG GH A +C
Sbjct: 3 VVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYEC 110
Score = 35.0 bits (79), Expect = 0.007
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 102 LCFNCGEIGHYASKCKIKGRLCFNCNQPGHFSRDC 136
+C NC ++GH + C +C NC GH + +C
Sbjct: 6 VCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYEC 110
Score = 30.8 bits (68), Expect = 0.12
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +3
Query: 122 LCFNCNQPGHFSRDCKAP 139
+C NC Q GH SRDC P
Sbjct: 6 VCRNCQQLGHMSRDCMGP 59
Score = 25.4 bits (54), Expect = 5.2
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +3
Query: 78 GKIVTCYRCKKVGHYTNKCPDG 99
G ++ C+ C GH +CP G
Sbjct: 54 GPLMICHNCGGRGHLAYECPSG 119
>AV773507
Length = 496
Score = 35.4 bits (80), Expect = 0.005
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 104 FNCGEIGHYASKCKIKGRLCFNCNQPGHFSRDCKAPKGESSGNTGKG 150
++ G G Y + ++ CF C +PGH +RDC P G G+G
Sbjct: 293 YSSGGRGSYGAGDRVGQDDCFECGRPGHRARDC--PLAGGGGGRGRG 427
Score = 30.0 bits (66), Expect = 0.21
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Frame = +2
Query: 38 CFKCNREGHLAVNCKTLQGGPSDSKMKGN-------DATGGTGNKTSGK 79
CF+C R GH A +C GG + G+ +GG G++ G+
Sbjct: 350 CFECGRPGHRARDCPLAGGGGGRGRGGGSLSSRPRYGGSGGHGDRLGGE 496
Score = 26.6 bits (57), Expect = 2.3
Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Frame = +2
Query: 62 KMKGNDATGGT---GNKTSGKIVTCYRCKKVGHYTNKCPDGGPLCFNCGEIGHYASKCKI 118
KM G+DA G G + G+ G Y G CF CG GH A C +
Sbjct: 248 KMGGDDADQGYRGGGYSSGGR----------GSYGAGDRVGQDDCFECGRPGHRARDCPL 397
Query: 119 KG 120
G
Sbjct: 398 AG 403
>TC17853 similar to UP|Q42412 (Q42412) RNA-binding protein RZ-1, partial
(58%)
Length = 881
Score = 35.0 bits (79), Expect = 0.007
Identities = 15/32 (46%), Positives = 19/32 (58%)
Frame = +2
Query: 120 GRLCFNCNQPGHFSRDCKAPKGESSGNTGKGK 151
G CF C +PGHF+R+C S G T +GK
Sbjct: 410 GGECFKCGKPGHFAREC-----PSEGETRRGK 490
Score = 30.4 bits (67), Expect = 0.16
Identities = 11/34 (32%), Positives = 16/34 (46%)
Frame = +2
Query: 67 DATGGTGNKTSGKIVTCYRCKKVGHYTNKCPDGG 100
D + G G C++C K GH+ +CP G
Sbjct: 371 DRSRGYGGSRGSNGGECFKCGKPGHFARECPSEG 472
Score = 29.6 bits (65), Expect = 0.27
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 85 RCKKVGHYTNKCPDGGPLCFNCGEIGHYASKCKIKG 120
R + G+ ++ +GG CF CG+ GH+A +C +G
Sbjct: 368 RDRSRGYGGSRGSNGGE-CFKCGKPGHFARECPSEG 472
Score = 26.9 bits (58), Expect = 1.8
Identities = 9/17 (52%), Positives = 10/17 (57%)
Frame = +2
Query: 35 GPRCFKCNREGHLAVNC 51
G CFKC + GH A C
Sbjct: 410 GGECFKCGKPGHFAREC 460
Score = 25.4 bits (54), Expect = 5.2
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +2
Query: 12 GDKDVTCFCCGKFGQFANNC 31
G CF CGK G FA C
Sbjct: 401 GSNGGECFKCGKPGHFAREC 460
>AV421607
Length = 245
Score = 34.7 bits (78), Expect = 0.009
Identities = 14/39 (35%), Positives = 21/39 (52%)
Frame = +3
Query: 63 MKGNDATGGTGNKTSGKIVTCYRCKKVGHYTNKCPDGGP 101
M+G+ G+G SG CY+C + GH++ CP P
Sbjct: 3 MEGSGPGSGSG---SGTATGCYKCGRPGHWSRDCPSSAP 110
Score = 32.7 bits (73), Expect = 0.032
Identities = 11/24 (45%), Positives = 16/24 (65%)
Frame = +3
Query: 123 CFNCNQPGHFSRDCKAPKGESSGN 146
C+ C +PGH+SRDC + S+ N
Sbjct: 54 CYKCGRPGHWSRDCPSSAPNSNPN 125
>TC18003 similar to PIR|T05112|T05112 splicing factor 9G8-like SR protein
RSZp22 [validated] - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (42%)
Length = 587
Score = 33.9 bits (76), Expect = 0.015
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 123 CFNCNQPGHFSRDCKAPKGESSGNTGK 149
C+ C +PGHF+R+C++ G +G+
Sbjct: 166 CYECGEPGHFARECRSRGGSRGLGSGR 246
Score = 30.8 bits (68), Expect = 0.12
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +1
Query: 64 KGNDATGGTGNKTSGKIVTCYRCKKVGHYTNKCPDGG 100
KG G G G+ + CY C + GH+ +C G
Sbjct: 109 KGGGGGRGGGRGRGGEDLKCYECGEPGHFARECRSRG 219
Score = 30.4 bits (67), Expect = 0.16
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 103 CFNCGEIGHYASKCKIKG 120
C+ CGE GH+A +C+ +G
Sbjct: 166 CYECGEPGHFARECRSRG 219
Score = 24.6 bits (52), Expect = 8.8
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = +1
Query: 37 RCFKCNREGHLAVNCKTLQG 56
+C++C GH A C++ G
Sbjct: 163 KCYECGEPGHFARECRSRGG 222
>BP079571
Length = 414
Score = 26.9 bits (58), Expect = 1.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 133 SRDCKAPKGESSGNTGKG 150
+RDC PKG S+G G G
Sbjct: 414 ARDCATPKGPSNGGVGGG 361
Score = 26.6 bits (57), Expect(2) = 0.031
Identities = 10/18 (55%), Positives = 11/18 (60%)
Frame = -1
Query: 99 GGPLCFNCGEIGHYASKC 116
GG CF GE+GH A C
Sbjct: 369 GGGGCFRFGEVGHLARDC 316
Score = 25.0 bits (53), Expect(2) = 0.031
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -3
Query: 123 CFNCNQPGHF 132
CF+C +PGHF
Sbjct: 262 CFHCGKPGHF 233
>TC11095 similar to PIR|T05112|T05112 splicing factor 9G8-like SR protein
RSZp22 [validated] - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (89%)
Length = 912
Score = 31.6 bits (70), Expect = 0.072
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 123 CFNCNQPGHFSRDCKAPKG 141
C+ C +PGHF+R+C+ G
Sbjct: 379 CYECGEPGHFARECRMRGG 435
Score = 31.6 bits (70), Expect = 0.072
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +1
Query: 103 CFNCGEIGHYASKCKIKG 120
C+ CGE GH+A +C+++G
Sbjct: 379 CYECGEPGHFARECRMRG 432
Score = 29.6 bits (65), Expect = 0.27
Identities = 13/41 (31%), Positives = 19/41 (45%)
Frame = +1
Query: 56 GGPSDSKMKGNDATGGTGNKTSGKIVTCYRCKKVGHYTNKC 96
GG +G +GG G G + CY C + GH+ +C
Sbjct: 307 GGGGGGGGRGGGRSGGGGG---GSDMKCYECGEPGHFAREC 420
Score = 24.6 bits (52), Expect = 8.8
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +1
Query: 37 RCFKCNREGHLAVNCKTLQGG 57
+C++C GH A C+ ++GG
Sbjct: 376 KCYECGEPGHFARECR-MRGG 435
>AV420911
Length = 418
Score = 31.2 bits (69), Expect = 0.094
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 123 CFNCNQPGHFSRDCK 137
C+ C +PGHF+R+C+
Sbjct: 374 CYECGEPGHFARECR 418
Score = 30.0 bits (66), Expect = 0.21
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 64 KGNDATGGTGNKTSGKIVTCYRCKKVGHYTNKC 96
KG G G G+ + CY C + GH+ +C
Sbjct: 317 KGGGGGRGGGRGRGGEDLKCYECGEPGHFAREC 415
Score = 28.1 bits (61), Expect = 0.80
Identities = 8/15 (53%), Positives = 12/15 (79%)
Frame = +2
Query: 103 CFNCGEIGHYASKCK 117
C+ CGE GH+A +C+
Sbjct: 374 CYECGEPGHFARECR 418
>TC13132 similar to UP|Q9FJA1 (Q9FJA1) Similarity to retroelement pol
polyprotein, partial (3%)
Length = 591
Score = 30.4 bits (67), Expect = 0.16
Identities = 15/43 (34%), Positives = 18/43 (40%)
Frame = +1
Query: 36 PRCFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGTGNKTSG 78
P C C GH A C L G P K K +T + +SG
Sbjct: 34 PICSHCGIPGHTAAKCFKLHGYPPGMKPKYKPSTHAVADPSSG 162
Score = 26.6 bits (57), Expect = 2.3
Identities = 9/16 (56%), Positives = 12/16 (74%)
Frame = +1
Query: 101 PLCFNCGEIGHYASKC 116
P+C +CG GH A+KC
Sbjct: 34 PICSHCGIPGHTAAKC 81
>BP042810
Length = 503
Score = 30.4 bits (67), Expect = 0.16
Identities = 12/31 (38%), Positives = 18/31 (57%)
Frame = +2
Query: 17 TCFCCGKFGQFANNCSVIGPRCFKCNREGHL 47
+C CCG+ + A++C VI F EGH+
Sbjct: 176 SCCCCGRVERVASSCCVIRS*SFLVEMEGHV 268
>TC19469 weakly similar to UP|Q9LP32 (Q9LP32) T9L6.1 protein, partial (26%)
Length = 501
Score = 30.0 bits (66), Expect = 0.21
Identities = 14/53 (26%), Positives = 26/53 (48%), Gaps = 1/53 (1%)
Frame = -1
Query: 33 VIGPRCFKCNREGHLAVN-CKTLQGGPSDSKMKGNDATGGTGNKTSGKIVTCY 84
+I P CFKC+ H +N C P+ ++ + T N+ + +++T Y
Sbjct: 333 LIFPICFKCDCN*HYGLNKCSKQHSNPNTLFLQMDKVTQHHSNRNTNEVITAY 175
>AV776569
Length = 633
Score = 28.5 bits (62), Expect = 0.61
Identities = 20/58 (34%), Positives = 24/58 (40%)
Frame = -1
Query: 15 DVTCFCCGKFGQFANNCSVIGPRCFKCNREGHLAVNCKTLQGGPSDSKMKGNDATGGT 72
D FC GK +ANNC I F E ++V C P KM G+ GT
Sbjct: 501 DCKNFCIGKLKAYANNCGNIHKANFPAASE--ISVVC------PMTLKMGGDQTYAGT 352
>BP065763
Length = 537
Score = 28.5 bits (62), Expect = 0.61
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -1
Query: 83 CYRCKKVGHYTNKCP 97
CY CKK GH+ CP
Sbjct: 381 CYFCKKAGHFKKYCP 337
>BP049972
Length = 496
Score = 28.5 bits (62), Expect = 0.61
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -1
Query: 123 CFNCNQPGHFSRDCKAP 139
C CNQ GHF C AP
Sbjct: 235 CSRCNQTGHFRTTCAAP 185
Score = 25.0 bits (53), Expect = 6.8
Identities = 7/18 (38%), Positives = 11/18 (60%)
Frame = -1
Query: 79 KIVTCYRCKKVGHYTNKC 96
++V C RC + GH+ C
Sbjct: 247 RVVHCSRCNQTGHFRTTC 194
>TC20129 homologue to GB|AAF04891.1|6175165|ATAC011437 Mutator-like
transposase {Arabidopsis thaliana;} , partial (12%)
Length = 588
Score = 28.5 bits (62), Expect = 0.61
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 123 CFNCNQPGHFSRDCKAP 139
C CNQ GHF C AP
Sbjct: 225 CSRCNQTGHFRTTCAAP 275
Score = 25.0 bits (53), Expect = 6.8
Identities = 7/18 (38%), Positives = 11/18 (60%)
Frame = +3
Query: 79 KIVTCYRCKKVGHYTNKC 96
++V C RC + GH+ C
Sbjct: 213 RVVHCSRCNQTGHFRTTC 266
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.321 0.140 0.472
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,987,068
Number of Sequences: 28460
Number of extensions: 68979
Number of successful extensions: 463
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of query: 165
length of database: 4,897,600
effective HSP length: 83
effective length of query: 82
effective length of database: 2,535,420
effective search space: 207904440
effective search space used: 207904440
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)
Lotus: description of TM0306.5