BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0306.1
(1224 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG662087 188 4e-48
TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase regi... 145 4e-35
BI417841 76 4e-14
TC18698 75 5e-14
BF177840 65 5e-11
AV427422 63 2e-10
AU089582 56 8e-10
TC16320 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial ... 59 4e-09
BP055130 54 2e-07
AV410603 50 2e-06
BP054462 44 2e-04
BP030435 43 3e-04
TC16930 35 0.093
TC18092 32 0.79
TC16535 similar to UP|AAP44426 (AAP44426) ZF-HD homeobox protein... 32 0.79
TC10403 similar to UP|O80815 (O80815) T8F5.22 protein, partial (... 29 5.1
BF177903 28 8.7
TC12930 homologue to UP|Q84L58 (Q84L58) 1-aminocyclopropane-1-ca... 28 8.7
BP041751 28 8.7
>BG662087
Length = 373
Score = 188 bits (478), Expect = 4e-48
Identities = 88/121 (72%), Positives = 101/121 (82%)
Frame = +1
Query: 278 SNGKWRMCTDYTDLNKHCPKDSYPLPNIDKLVDRASGFGMLSLMDAYSGYHQIRMYAPDE 337
++GKWRM DYTDLNK CPKDSYPLP+IDKLVD AS +LSLMDAYSGYHQI+M+ DE
Sbjct: 10 TSGKWRMWVDYTDLNKACPKDSYPLPSIDKLVDGASDNELLSLMDAYSGYHQIKMHPSDE 189
Query: 338 EKTAFMTNQANYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEIYVDDMVVKSEEMGG 397
+KTAFMT + NYCYQT+PFGLKNAGATYQ LMDRVF VGRNME+Y+D+M+VKS
Sbjct: 190 DKTAFMTARVNYCYQTIPFGLKNAGATYQXLMDRVFXDXVGRNMEVYLDNMIVKSALRAN 369
Query: 398 H 398
H
Sbjct: 370 H 372
>TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase region
(Fragment), partial (10%)
Length = 572
Score = 145 bits (366), Expect = 4e-35
Identities = 69/117 (58%), Positives = 88/117 (74%)
Frame = +2
Query: 1011 DNGTQFTSRIVRDFCNEMGIEMRFASVEHPQSNGQVEAANKVILNGIKKRLGDAKGLWAD 1070
+NG QFTS+ +DFC+ MGI+MRF+SV+HPQ+NGQ EAANKVIL GIK+RL +A+G W D
Sbjct: 8 ENGIQFTSKQTQDFCDGMGIQMRFSSVKHPQTNGQTEAANKVILKGIKRRLYEAEGRWID 187
Query: 1071 ELLTVVWAYNTTPQSTTGETPFRLTYGVDAMVPVEIQDMTFRVAAYDENENHENRLI 1127
EL V+W+YNT PQS+ ETPF LTYG D M+PVEI + ++ A E EN N +
Sbjct: 188 ELPIVLWSYNTMPQSSIKETPF*LTYGADTMLPVEISNFSW*TKARHEEENRMNMAV 358
>BI417841
Length = 617
Score = 75.9 bits (185), Expect = 4e-14
Identities = 48/135 (35%), Positives = 71/135 (52%), Gaps = 6/135 (4%)
Frame = +1
Query: 661 LSVDGSSYLKGS----GAGVVLEGPGG--VIIEQSLKFDFKASNNQAEYEAIIAGINLAI 714
L DGSS KG+ GAG VL G V + + + +NNQAEY +I G+ A
Sbjct: 142 LEFDGSS--KGNPGSAGAGAVLRAEDGSKVYLREGVG---NQTNNQAEYRGLILGLKHAH 306
Query: 715 EMNVHCLVIKTDSQLVANQIKGDYQAKDIQLAKYLTKTQELMKRMDSVQVNHVPREENTR 774
E + +K DSQLV Q++G ++A++ +A + +EL + S +NHVPR+ N+
Sbjct: 307 EQGYQHINVKGDSQLVCKQVEGSWKARNPNIASLCNEAKELKSKFQSFDINHVPRQYNSE 486
Query: 775 ADVLCKLASTKKPGN 789
ADV L G+
Sbjct: 487 ADVQANLGVNLPAGH 531
>TC18698
Length = 808
Score = 75.5 bits (184), Expect = 5e-14
Identities = 35/73 (47%), Positives = 49/73 (66%)
Frame = -2
Query: 337 EEKTAFMTNQANYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEIYVDDMVVKSEEMG 396
++KT N+ NY YQ MP GLKN TYQRLMD++F Q+ +N+E+YV+DM+VKS +
Sbjct: 807 KKKTTLKINRVNYYYQVMPLGLKNI*TTYQRLMDKIFHKQI*KNVEVYVEDMIVKSSQE* 628
Query: 397 GHCLDLAEAFGEI 409
H DL+ +I
Sbjct: 627 FHRGDLSRDLSDI 589
>BF177840
Length = 410
Score = 65.5 bits (158), Expect = 5e-11
Identities = 31/103 (30%), Positives = 56/103 (54%)
Frame = +2
Query: 1007 TLVSDNGTQFTSRIVRDFCNEMGIEMRFASVEHPQSNGQVEAANKVILNGIKKRLGDAKG 1066
++VSD T+F S R ++G ++ +++ HPQ++GQ E NK + ++ L
Sbjct: 14 SIVSDRDTKFISHFWRTLWGKVGTKLLYSTTCHPQTDGQTEVVNKTLSTLLRSVLERNLK 193
Query: 1067 LWADELLTVVWAYNTTPQSTTGETPFRLTYGVDAMVPVEIQDM 1109
+W L + +AYN STT +PF + YG + + P+++ M
Sbjct: 194 MWETWLPHIEFAYNRVVHSTTKHSPFEIVYGYNPLTPLDLLPM 322
>AV427422
Length = 417
Score = 63.2 bits (152), Expect = 2e-10
Identities = 35/127 (27%), Positives = 65/127 (50%), Gaps = 1/127 (0%)
Frame = +1
Query: 966 VLVAVDYFTKWIEAESMAK-ITAEKVKKFYWRKIICRFGVPATLVSDNGTQFTSRIVRDF 1024
VLV VD +K+ + TA+ + + R+++ GVP ++VSD F S ++
Sbjct: 37 VLVVVDRLSKFSHFVPLKHPYTAKVIADIFVREVVRLHGVPLSIVSDRDPLFMSNFWKEL 216
Query: 1025 CNEMGIEMRFASVEHPQSNGQVEAANKVILNGIKKRLGDAKGLWADELLTVVWAYNTTPQ 1084
G +++ ++ HP+S+GQ E N+ + ++ + D WA + + YNT+
Sbjct: 217 FKMQGTKLKMSTAYHPESDGQTEVVNRCLETYLRCFIADQPKSWAHWVPWAEYWYNTSYH 396
Query: 1085 STTGETP 1091
+TG+TP
Sbjct: 397 VSTGQTP 417
>AU089582
Length = 383
Score = 56.2 bits (134), Expect(2) = 8e-10
Identities = 25/80 (31%), Positives = 46/80 (57%)
Frame = +2
Query: 987 AEKVKKFYWRKIICRFGVPATLVSDNGTQFTSRIVRDFCNEMGIEMRFASVEHPQSNGQV 1046
A + K Y +I+ GVP +++SD G QFTS R F +G ++ ++ HPQ++GQ
Sbjct: 11 ASQYAKIYLDEIVSLHGVPVSIISDRGAQFTSHFWRSFQTALGTRLKMSTAFHPQTDGQS 190
Query: 1047 EAANKVILNGIKKRLGDAKG 1066
E +++ + ++ + D +G
Sbjct: 191 ERTIQILEDMLRACVXDLRG 250
Score = 25.0 bits (53), Expect(2) = 8e-10
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +3
Query: 1065 KGLWADELLTVVWAYNTTPQSTTGETPFRLTYGVDAMVPV 1104
+G W L + +AYN + +S+ PF YG P+
Sbjct: 246 EGSWDQYLSLMEFAYNNSYRSSI*MAPFEALYGRRCRSPI 365
>TC16320 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial (11%)
Length = 632
Score = 59.3 bits (142), Expect = 4e-09
Identities = 29/91 (31%), Positives = 51/91 (55%)
Frame = +2
Query: 703 YEAIIAGINLAIEMNVHCLVIKTDSQLVANQIKGDYQAKDIQLAKYLTKTQELMKRMDSV 762
Y +I G+ AI+ + +K DS LV NQ++G ++ K+ +A ++ +EL + S
Sbjct: 2 YRGLILGLKHAIKEGYKHIQVKGDSMLVCNQVQGLWKIKNQNIASLCSEAKELKNKFLSF 181
Query: 763 QVNHVPREENTRADVLCKLASTKKPGNNKSV 793
++NH+PRE N+ ADV + + G + V
Sbjct: 182 KINHIPREYNSEADVQANFGISLRAGQVEEV 274
>BP055130
Length = 567
Score = 53.5 bits (127), Expect = 2e-07
Identities = 33/111 (29%), Positives = 55/111 (48%), Gaps = 1/111 (0%)
Frame = +2
Query: 966 VLVAVDYFTKWIE-AESMAKITAEKVKKFYWRKIICRFGVPATLVSDNGTQFTSRIVRDF 1024
++V VD +K+ A A T+ +V + + I+ G+P +VSD FTS + F
Sbjct: 191 IIVVVDRLSKYGHFAPHRANYTSSQVAETFVSTIVKLHGMPRAIVSDRDKAFTSAFWKHF 370
Query: 1025 CNEMGIEMRFASVEHPQSNGQVEAANKVILNGIKKRLGDAKGLWADELLTV 1075
G + +S HPQ++GQ EA NK + ++ + + LW LL +
Sbjct: 371 FKLHGTTLNMSSSYHPQTDGQTEALNKCLELYLRCFVHETPRLWVSYLLAL 523
>AV410603
Length = 162
Score = 50.1 bits (118), Expect = 2e-06
Identities = 22/49 (44%), Positives = 30/49 (60%)
Frame = +1
Query: 297 KDSYPLPNIDKLVDRASGFGMLSLMDAYSGYHQIRMYAPDEEKTAFMTN 345
KDS+P+P +D+L+D G S +D SGYHQI + D KT F T+
Sbjct: 10 KDSFPMPTVDELLDELRGSQFFSKLDLRSGYHQILVKPEDRHKTVFRTH 156
>BP054462
Length = 422
Score = 43.9 bits (102), Expect = 2e-04
Identities = 36/139 (25%), Positives = 65/139 (45%), Gaps = 7/139 (5%)
Frame = +1
Query: 1090 TPFRLTYGVDAMVPVEIQDMTFRVAAYDENENHENRLIDLNLAEEVKTEVRLRQAAVKQR 1149
+PF+ YG + V ++ + ++AA ++ + + L+ A +K++ +R A K+R
Sbjct: 31 SPFQALYGREPPVLLQGTTIPSKIAAVNDLQVGRDELLSDLRANLLKSQDMMRTYANKKR 210
Query: 1150 SERRYNTRVVPRHMQVGDLVL-------RRKAKGPDDSKLSPNWEGPYRILRDLGQGAYH 1202
+ Y Q+GD V RR + KLSP + GPY I+ +G AY
Sbjct: 211 RDVDY---------QIGDEVFLKLQPYRRRSLAKKMNEKLSPRYYGPYPIVAKIGAVAYR 363
Query: 1203 LEELSGRRIPRAWNAQHLR 1221
LE + R+ ++ L+
Sbjct: 364 LELPAHSRVHPVFHVSLLK 420
>BP030435
Length = 533
Score = 42.7 bits (99), Expect = 3e-04
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = +1
Query: 1 DQGSSADLIYGDAYEKLGLTEADLLP 26
DQGSSAD+IYG +++LGL EADL P
Sbjct: 454 DQGSSADIIYGGVFDRLGLNEADLTP 531
>TC16930
Length = 520
Score = 34.7 bits (78), Expect = 0.093
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +1
Query: 64 FLVVKCTSPYNVLIGRPSLNKLGAIISTRHLTVKYPLSKGGVGILKADQVVAWRCY 119
F++ + YN ++ PSLN I TR L K+ + ++ DQ VA CY
Sbjct: 10 FMLANNLTSYNAILC*PSLNVFDMCILTRRLASKFSTDNTEIVTIQGDQEVAPNCY 177
>TC18092
Length = 519
Score = 31.6 bits (70), Expect = 0.79
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = -2
Query: 284 MCTDYTDLNKHCPKDSYPLPNIDKLVDRASGFGML 318
MC TD+NK CP+ PL +I+ LVD +S + L
Sbjct: 101 MCVC*TDINKDCPR--XPLTSINALVDYSSSYEYL 3
>TC16535 similar to UP|AAP44426 (AAP44426) ZF-HD homeobox protein-like protein
(Fragment), partial (38%)
Length = 613
Score = 31.6 bits (70), Expect = 0.79
Identities = 21/57 (36%), Positives = 30/57 (51%), Gaps = 6/57 (10%)
Frame = +3
Query: 1021 VRDFCNEMGIEMRFASV-EHPQSN--GQVEAANKVILNGIKKRL---GDAKGLWADE 1071
V+DFCNE+GIE V H N G+ + +N++ N I + G AK +A E
Sbjct: 66 VQDFCNEIGIERGVLKVWMHNNKNTFGKRDGSNEINNNNINNNINNAGSAKSFFAKE 236
>TC10403 similar to UP|O80815 (O80815) T8F5.22 protein, partial (15%)
Length = 1392
Score = 28.9 bits (63), Expect = 5.1
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 764 VNHVPREENTRADVLCKLASTKKPGNNKSVIQETLKSPS 802
+ H PR +N+ AD + S K PG +S+I+ + + PS
Sbjct: 3 IRHEPRFQNSTADEAMEFLSDKDPG--ESIIRPSSRGPS 113
>BF177903
Length = 485
Score = 28.1 bits (61), Expect = 8.7
Identities = 14/36 (38%), Positives = 20/36 (54%)
Frame = +3
Query: 477 PCSGSKATPFFQCLRKNRVFQWTDECEQAFQSLKEL 512
P GS+ TP Q + F+W D C F++L+EL
Sbjct: 312 PKEGSQLTPPHQ----SEDFKWKDYCPMVFRNLREL 407
>TC12930 homologue to UP|Q84L58 (Q84L58) 1-aminocyclopropane-1-carboxylic
acid oxidase, partial (36%)
Length = 422
Score = 28.1 bits (61), Expect = 8.7
Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Frame = +1
Query: 216 PNFICHKLALNPGVKPIAQMKRKMGEEKAQAVKAETNKLIDAGFIREVKYPTWLANVVMV 275
P+ I L LNP P+ + GEE+A+ + N + GF + + + + V
Sbjct: 49 PSLITTSLYLNPMAIPVIDFSKLNGEERAKTMAQIHNGCEEWGFFQLINHGIPEELLERV 228
Query: 276 KKSNGKWRMCTDYTDLNKHCP-KDSYPLPNIDKLVDRAS 313
KK +C+++ L + K+S + +++L ++ S
Sbjct: 229 KK------VCSEFYKLEREENFKNSKTVKLLNELAEKKS 327
>BP041751
Length = 471
Score = 28.1 bits (61), Expect = 8.7
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 787 PGNNKSVIQETLKSPSINEDDVVMVTGAAPSDWMDR 822
P + K I T K+PS++ VT ++PS+ +DR
Sbjct: 247 PKSTKP*IGPTAKAPSLSSASTTRVTSSSPSNALDR 354
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,981,509
Number of Sequences: 28460
Number of extensions: 241362
Number of successful extensions: 1075
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of query: 1224
length of database: 4,897,600
effective HSP length: 101
effective length of query: 1123
effective length of database: 2,023,140
effective search space: 2271986220
effective search space used: 2271986220
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0306.1