TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0304.9
         (156 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC15802 similar to UP|Q9XIV1 (Q9XIV1) mRNA expressed in cucumber...    26  3.5
AV770974                                                               26  3.5
TC16662 weakly similar to UP|O80843 (O80843) At2g45760 protein, ...    25  4.6
TC14149 homologue to PIR|T45927|T45927 ribosomal protein S3a hom...    25  4.6
AV770703                                                               25  7.9
BP038126                                                               25  7.9
AV771078                                                               25  7.9

>TC15802 similar to UP|Q9XIV1 (Q9XIV1) mRNA expressed in cucumber hypocotyls
           (Arabinogalactan protein), partial (26%)
          Length = 795

 Score = 25.8 bits (55), Expect = 3.5
 Identities = 9/24 (37%), Positives = 14/24 (57%)
 Frame = +3

Query: 45  MFRVPVDHTFFFDTQHSSLQLHLY 68
           +FR+P+ H   F + H    LHL+
Sbjct: 300 LFRLPLHHLLLFQSAHLQPNLHLH 371


>AV770974 
          Length = 487

 Score = 25.8 bits (55), Expect = 3.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 48  VPVDHTFFFDTQHSSLQLHL 67
           +P+DHTF     H  L LHL
Sbjct: 295 IPIDHTFIQLGMHGLLHLHL 354


>TC16662 weakly similar to UP|O80843 (O80843) At2g45760 protein, partial
           (13%)
          Length = 816

 Score = 25.4 bits (54), Expect = 4.6
 Identities = 12/26 (46%), Positives = 20/26 (76%)
 Frame = +3

Query: 100 VRYLSYRLRATDGCRSDIIINLSVKL 125
           +++LSYRLR  +G R+  ++N SV+L
Sbjct: 417 LQFLSYRLRNWEGKRNG-VVNFSVRL 491


>TC14149 homologue to PIR|T45927|T45927 ribosomal protein S3a homolog -
           Arabidopsis thaliana {Arabidopsis thaliana;}, partial
           (87%)
          Length = 1191

 Score = 25.4 bits (54), Expect = 4.6
 Identities = 10/35 (28%), Positives = 20/35 (56%)
 Frame = -1

Query: 37  DGGGAEEHMFRVPVDHTFFFDTQHSSLQLHLYNKR 71
           +GG      FR+P++H    DT+++  + H+ + R
Sbjct: 741 EGGFGTLFTFRIPIEHDLNLDTKNTLSKEHMSHCR 637


>AV770703 
          Length = 539

 Score = 24.6 bits (52), Expect = 7.9
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
 Frame = +2

Query: 30  NHLVYSYDGGGAEEH------MFRVPVDHTFFFDT 58
           NH++Y+Y G G E        +   P  H ++F+T
Sbjct: 113 NHVLYAYSGAGQEVENVAALCLESAPPFHRWYFET 217


>BP038126 
          Length = 548

 Score = 24.6 bits (52), Expect = 7.9
 Identities = 14/32 (43%), Positives = 19/32 (58%), Gaps = 1/32 (3%)
 Frame = -2

Query: 117 IIINLSVKL-LGSPDTCQTVIGIPVTAVRGVD 147
           I+++  V L LG  D  QTV   PV  +RGV+
Sbjct: 484 IVLSPRVSLALGGFDDAQTVATTPVNVLRGVE 389


>AV771078 
          Length = 329

 Score = 24.6 bits (52), Expect = 7.9
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 26  TNLSNHLVYSYDGGGAEEHMFRVPV 50
           TNL  HLVYS+ G     H   V V
Sbjct: 116 TNLKQHLVYSF*GPSLLAHYINVIV 42


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.323    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,672,260
Number of Sequences: 28460
Number of extensions: 35740
Number of successful extensions: 157
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of query: 156
length of database: 4,897,600
effective HSP length: 83
effective length of query: 73
effective length of database: 2,535,420
effective search space: 185085660
effective search space used: 185085660
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)