BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0304.6
(243 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC7964 homologue to UP|O81926 (O81926) Thaumatin-like protein PR... 429 e-121
TC7965 homologue to UP|O81926 (O81926) Thaumatin-like protein PR... 234 8e-63
TC8428 similar to UP|Q9SNY0 (Q9SNY0) SCUTL2, partial (87%) 202 6e-53
TC18115 weakly similar to UP|Q93XD4 (Q93XD4) Thaumatin-like prot... 198 8e-52
BP036640 178 7e-46
TC14162 similar to UP|OLP1_LYCES (Q41350) Osmotin-like protein p... 144 1e-35
TC19049 similar to PIR|T05694|T05694 pathogenesis-related protei... 113 3e-26
TC20023 similar to GB|AAP13435.1|30023804|BT006327 At1g20030 {Ar... 107 2e-24
TC9212 similar to UP|TLPH_ARATH (P50699) Thaumatin-like protein ... 100 2e-22
BP046128 67 4e-12
TC16995 similar to PIR|T05493|T05493 pathogenesis-related protei... 65 1e-11
AV409685 49 1e-06
AV769280 46 5e-06
BP056986 45 1e-05
AW428867 42 7e-05
AV410524 39 6e-04
CB827268 32 0.099
AV409790 32 0.099
TC11589 similar to UP|Q9FVH1 (Q9FVH1) Transaldolase, partial (39%) 29 0.84
AV409746 28 1.1
>TC7964 homologue to UP|O81926 (O81926) Thaumatin-like protein PR-5b
precursor (Fragment), partial (74%)
Length = 778
Score = 429 bits (1104), Expect = e-121
Identities = 196/203 (96%), Positives = 196/203 (96%)
Frame = +2
Query: 1 MGYLTLSSLLLMLTASLVTLTRAANFEIVNNCPYTVWAAASPGGGRRLDRGQTWNLGVNA 60
MGYLTLSSLLLMLTASLVTLTRAANFEIVNNCPYTVWAAASPGGGRRLDRGQTWNLGVNA
Sbjct: 35 MGYLTLSSLLLMLTASLVTLTRAANFEIVNNCPYTVWAAASPGGGRRLDRGQTWNLGVNA 214
Query: 61 GTAMARIWGRTGCNFDGAGRGRCQTGDCTGGLNCQGWGVPPNTLAEFALNQYGNQDFYDI 120
GTAMARIWGRTGCNFDGAGRGRCQTGDCTGGLNCQGWGVPPNTLAEFALNQYGNQDFYDI
Sbjct: 215 GTAMARIWGRTGCNFDGAGRGRCQTGDCTGGLNCQGWGVPPNTLAEFALNQYGNQDFYDI 394
Query: 121 SLVDGFNIPMDFFPLNGGCHKISCTADINGQCPNELRAPGGCNNPCTVYKTNEFCCTNGQ 180
SLVDGFNIPMDFFPLNGGCHKISCTADINGQCPNELRAPGGCNNPCT YKTNEFCCTNGQ
Sbjct: 395 SLVDGFNIPMDFFPLNGGCHKISCTADINGQCPNELRAPGGCNNPCTAYKTNEFCCTNGQ 574
Query: 181 GTCGPTNFSRFFKDRCHDSYSYP 203
GTCGP F RFFKDRCHDS P
Sbjct: 575 GTCGPN*FLRFFKDRCHDS*QLP 643
Score = 28.5 bits (62), Expect = 1.1
Identities = 21/54 (38%), Positives = 25/54 (45%), Gaps = 1/54 (1%)
Frame = +3
Query: 184 GPTNFSRFFKDRCHDSYSYPQDDPTSTFTCPAGSNYKVVFCPLG-SPHVTLMMP 236
GPTN + +YPQD+P FT G + VF P G SP L MP
Sbjct: 585 GPTNSYGSLRTGAMILNNYPQDEPHHHFT*RCGI*LQSVFRPTGNSPCRPL*MP 746
>TC7965 homologue to UP|O81926 (O81926) Thaumatin-like protein PR-5b
precursor (Fragment), partial (37%)
Length = 633
Score = 234 bits (598), Expect = 8e-63
Identities = 102/102 (100%), Positives = 102/102 (100%)
Frame = +2
Query: 142 ISCTADINGQCPNELRAPGGCNNPCTVYKTNEFCCTNGQGTCGPTNFSRFFKDRCHDSYS 201
ISCTADINGQCPNELRAPGGCNNPCTVYKTNEFCCTNGQGTCGPTNFSRFFKDRCHDSYS
Sbjct: 2 ISCTADINGQCPNELRAPGGCNNPCTVYKTNEFCCTNGQGTCGPTNFSRFFKDRCHDSYS 181
Query: 202 YPQDDPTSTFTCPAGSNYKVVFCPLGSPHVTLMMPGNDTRGY 243
YPQDDPTSTFTCPAGSNYKVVFCPLGSPHVTLMMPGNDTRGY
Sbjct: 182 YPQDDPTSTFTCPAGSNYKVVFCPLGSPHVTLMMPGNDTRGY 307
>TC8428 similar to UP|Q9SNY0 (Q9SNY0) SCUTL2, partial (87%)
Length = 1131
Score = 202 bits (513), Expect = 6e-53
Identities = 108/250 (43%), Positives = 133/250 (53%), Gaps = 25/250 (10%)
Frame = +1
Query: 4 LTLSSLLLMLTASLVTLTRAAN---FEIVNNCPYTVWAAASPGGGRRLDRGQTWNLGVNA 60
LTL+S + L+ L A+ F + N+C YTVW G G + ++L A
Sbjct: 61 LTLNSKAFFIFHLLLLLGNVASATLFTLENHCTYTVWPGTLSGNGAAVLGDGGFSLAPGA 240
Query: 61 GTAMA-------RIWGRTGCNFDGAGRGRCQTGDCTGGLNCQGWGVPPNTLAEFALN--Q 111
+ R W RTGCNFDG G G C TGDC GGL C G GVPP TLAEF +
Sbjct: 241 SVQVTAPSGWSGRFWARTGCNFDGTGNGNCATGDCAGGLKCTGGGVPPVTLAEFTIGTAS 420
Query: 112 YGNQDFYDISLVDGFNIPMDFFPL--NGGCHKISCTADINGQCPNELRAPG--------G 161
GN+DFYD+SLVDG+N+ M G C C AD+NG CP EL+ G
Sbjct: 421 NGNKDFYDVSLVDGYNVGMGVRATGGTGDCQYAGCVADLNGSCPAELQVKGENSTGEVVA 600
Query: 162 CNNPCTVYKTNEFCCTNGQ---GTCGPTNFSRFFKDRCHDSYSYPQDDPTSTFTCPAGSN 218
C + C + T EFCCT TC PT++S FK C +YSY DD TST TC +GS+
Sbjct: 601 CKSACAAFNTTEFCCTGEHATPATCSPTHYSEIFKSACPTAYSYAYDDATSTCTC-SGSD 777
Query: 219 YKVVFCPLGS 228
Y + FCP GS
Sbjct: 778 YSITFCPNGS 807
>TC18115 weakly similar to UP|Q93XD4 (Q93XD4) Thaumatin-like protein,
partial (63%)
Length = 792
Score = 198 bits (503), Expect = 8e-52
Identities = 101/221 (45%), Positives = 126/221 (56%), Gaps = 1/221 (0%)
Frame = +2
Query: 6 LSSLLLMLTASLVTLTRAANFEIVNNCPYTVWAAASPGGGRRLDRGQTWNLGVNAGTAMA 65
+ + L L A TL +AA F+I N C Y VW A+ PGGGRRL+ G+TW L +NAG++
Sbjct: 14 MKTSLFSLIALCFTLAQAARFDITNRCSYPVWPASLPGGGRRLNSGETWPLNLNAGSS-G 190
Query: 66 RIWGRTGCNFDGAGRGRCQTGDCTGGLNCQGWGVPPNTLAEFALNQYGNQDFYDISLVDG 125
RIWGRTGCNFDG+GRG CQTGDC G L+C G PP TLAEF LN NQD+YDIS++DG
Sbjct: 191 RIWGRTGCNFDGSGRGSCQTGDCGGALSCSLSGRPPTTLAEFTLNGGNNQDYYDISVIDG 370
Query: 126 FNIPMDFFPLNGGC-HKISCTADINGQCPNELRAPGGCNNPCTVYKTNEFCCTNGQGTCG 184
FN+PM+F P + GC + C AD
Sbjct: 371 FNVPMEFSPTSNGCTRSLRCHAD------------------------------------- 439
Query: 185 PTNFSRFFKDRCHDSYSYPQDDPTSTFTCPAGSNYKVVFCP 225
+C D+Y YP DD T T +CP G++Y+VVFCP
Sbjct: 440 ----------KCPDAYLYPSDD-TKTHSCPGGTHYRVVFCP 529
>BP036640
Length = 468
Score = 178 bits (452), Expect = 7e-46
Identities = 77/78 (98%), Positives = 77/78 (98%)
Frame = -2
Query: 165 PCTVYKTNEFCCTNGQGTCGPTNFSRFFKDRCHDSYSYPQDDPTSTFTCPAGSNYKVVFC 224
PCTVYKTNEFCCTNGQGTCGPTNFSRFFKDRCHDSYSYPQDDPTSTFTCPAGSNYKVVFC
Sbjct: 467 PCTVYKTNEFCCTNGQGTCGPTNFSRFFKDRCHDSYSYPQDDPTSTFTCPAGSNYKVVFC 288
Query: 225 PLGSPHVTLMMPGNDTRG 242
PLGSPHVTLMMPGNDT G
Sbjct: 287 PLGSPHVTLMMPGNDTTG 234
>TC14162 similar to UP|OLP1_LYCES (Q41350) Osmotin-like protein precursor,
partial (87%)
Length = 1232
Score = 144 bits (364), Expect = 1e-35
Identities = 86/245 (35%), Positives = 121/245 (49%), Gaps = 24/245 (9%)
Frame = +1
Query: 4 LTLSSLLLMLTASLVTLTRAANFEIVNNCPYTVWAAASP--------GGGRRLDRGQTWN 55
L +S L++ + +T + A +VNNC YTVW P GGG L+ +
Sbjct: 49 LLISCFLILTITTHLTPSHALFLTLVNNCKYTVWPGIQPNAGHPVLAGGGFVLNPFTHLS 228
Query: 56 LGVNAGTAMARIWGRTGCNFDGAGRGRCQTGDCTGGLNCQG-WGVPPNTLAEFALNQYGN 114
+ V R+W RTGC + R C +GDC G L C G G P TLA+F ++ +GN
Sbjct: 229 IPVPDTHWSGRVWARTGCTYAAGNRFTCASGDCGGRLQCAGAGGSAPATLAQFDMH-HGN 405
Query: 115 QDF--YDISLVDGFNIPMDFFPLNGG--CHKISCTADINGQCPNEL--RAPG------GC 162
DF Y +SLVDGFN+PM P G C + C +D+ CP L R P C
Sbjct: 406 ADFSSYSVSLVDGFNVPMTVTPHEGKGVCPVVGCRSDLLATCPPVLHHRVPAVHGPVVAC 585
Query: 163 NNPCTVYKTNEFCCTN---GQGTCGPTNFSRFFKDRCHDSYSYPQDDPTSTFTCPAGSNY 219
+ C + ++E CC N TC P+ +S FFK C ++++ D P+ T C +
Sbjct: 586 KSGCEAFHSDELCCRNHFNNAQTCKPSVYSTFFKHACPATFTFAHDTPSLTHECSSPREL 765
Query: 220 KVVFC 224
KV+FC
Sbjct: 766 KVIFC 780
>TC19049 similar to PIR|T05694|T05694 pathogenesis-related protein
F20M13.220 - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (36%)
Length = 861
Score = 113 bits (282), Expect = 3e-26
Identities = 63/142 (44%), Positives = 80/142 (55%), Gaps = 9/142 (6%)
Frame = +3
Query: 24 ANFEIVNNCPYTVWAA--ASP---GGGRRLDRGQTWNLGVNAGTAMARIWGRTGCNFDGA 78
A F VN C +TVW P G L +G + + G + R W RTGC FD +
Sbjct: 441 ATFSFVNKCDFTVWPGIFGKPEIGSTGFELTKGSSKSFQAPTGWS-GRFWARTGCQFDSS 617
Query: 79 GRGRCQTGDC-TGGLNCQG-WGVPPNTLAEFALNQYGNQDFYDISLVDGFNIPMDFFPL- 135
GRG C T DC +G +NC G +PP TLAEF L G+ DFYD+SLVDG+N+PM
Sbjct: 618 GRGTCATADCGSGEINCNGATALPPATLAEFTLGT-GSMDFYDVSLVDGYNLPMMVVASG 794
Query: 136 -NGGCHKISCTADINGQCPNEL 156
+G C C AD+N +CP+EL
Sbjct: 795 GSGSCSATGCGADLNRKCPSEL 860
>TC20023 similar to GB|AAP13435.1|30023804|BT006327 At1g20030 {Arabidopsis
thaliana;}, partial (46%)
Length = 418
Score = 107 bits (267), Expect = 2e-24
Identities = 55/136 (40%), Positives = 74/136 (53%), Gaps = 14/136 (10%)
Frame = +3
Query: 89 TGGLNCQGWGV-PPNTLAEFALNQYGNQDFYDISLVDGFNIPMDFFPLNG---GCHKISC 144
+G L C G G PP TLAEF L+ DF+D+SLVDG+N+PM P G C C
Sbjct: 9 SGKLECAGSGAAPPATLAEFTLDGSDGLDFFDVSLVDGYNVPMLVVPEGGSGNNCTATGC 188
Query: 145 TADINGQCPNELRAPG-------GCNNPCTVYKTNEFCCTNGQG---TCGPTNFSRFFKD 194
D+NG CP+ELR C + C + + ++CC+ G TC P+ +S+ FK
Sbjct: 189 VGDLNGACPSELRVTSVDGKRNVACKSACEAFGSPQYCCSGAYGSPNTCKPSTYSQVFKS 368
Query: 195 RCHDSYSYPQDDPTST 210
C +YSY DD +ST
Sbjct: 369 ACPRAYSYAYDDKSST 416
>TC9212 similar to UP|TLPH_ARATH (P50699) Thaumatin-like protein precursor,
partial (51%)
Length = 662
Score = 100 bits (249), Expect = 2e-22
Identities = 50/122 (40%), Positives = 64/122 (51%), Gaps = 12/122 (9%)
Frame = +1
Query: 116 DFYDISLVDGFNIPMDFFPLNGG--CHKISCTADINGQCPNELRAPG-------GCNNPC 166
DFYD+SLVDG+N+P+ PL G C C D+N CP L+ C + C
Sbjct: 1 DFYDVSLVDGYNLPISITPLKGSGKCSYAGCVRDLNIMCPVGLQVRSRDNKRVVACKSAC 180
Query: 167 TVYKTNEFCCTNGQGT---CGPTNFSRFFKDRCHDSYSYPQDDPTSTFTCPAGSNYKVVF 223
+ + +CCT G+ C PT +SR FK C +YSY DDPTS TC S Y + F
Sbjct: 181 AAFNSPRYCCTGSYGSPQSCKPTAYSRIFKTACPKAYSYAYDDPTSISTCTHAS-YLITF 357
Query: 224 CP 225
CP
Sbjct: 358 CP 363
>BP046128
Length = 514
Score = 66.6 bits (161), Expect = 4e-12
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Frame = -1
Query: 161 GCNNPCTVYKTNEFCCTN---GQGTCGPTNFSRFFKDRCHDSYSYPQDDPTSTFTCPAGS 217
GCN+ C + ++CCT C P+ ++ FFK +C +YSYP DD +STF+C + +
Sbjct: 508 GCNSACVAFNEAKYCCTGEFESPELCKPSEYALFFKKKCPLAYSYPSDDESSTFSC-SRA 332
Query: 218 NYKVVFCPLGSPHVT 232
+Y + FCP H T
Sbjct: 331 DYTITFCP*TYTHRT 287
>TC16995 similar to PIR|T05493|T05493 pathogenesis-related protein 19K4.140
- Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(22%)
Length = 614
Score = 65.1 bits (157), Expect = 1e-11
Identities = 29/60 (48%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Frame = +1
Query: 173 EFCCT---NGQGTCGPTNFSRFFKDRCHDSYSYPQDDPTSTFTCPAGSNYKVVFCPLGSP 229
E+CC + TC P+ +S FK C +SYSY DD TSTFTC +G++Y + FCP SP
Sbjct: 4 EYCCNGAFSNPSTCKPSVYSEMFKSACPESYSYAYDDATSTFTC-SGADYTITFCPSSSP 180
>AV409685
Length = 270
Score = 48.5 bits (114), Expect = 1e-06
Identities = 30/78 (38%), Positives = 37/78 (46%), Gaps = 9/78 (11%)
Frame = +2
Query: 26 FEIVNNCPYTVW--------AAASPGGGRRLDRGQTWNLGVNAGTAMARIWGRTGCNFDG 77
F +VN C YTVW P G L G++ + A R WGRT C+ D
Sbjct: 38 FTVVNKCDYTVWPGILTNAGVTPLPITGFVLQTGESKLIPAPANWG-GRFWGRTLCSQDS 214
Query: 78 AGRGRCQTGDC-TGGLNC 94
AG+ C TGDC +G L C
Sbjct: 215 AGKFTCVTGDCGSGKLEC 268
>AV769280
Length = 327
Score = 46.2 bits (108), Expect = 5e-06
Identities = 20/34 (58%), Positives = 24/34 (69%)
Frame = -3
Query: 196 CHDSYSYPQDDPTSTFTCPAGSNYKVVFCPLGSP 229
C SYSY DD TSTFTC +G++Y + FCP SP
Sbjct: 325 CPKSYSYAYDDATSTFTC-SGADYTITFCPSSSP 227
>BP056986
Length = 450
Score = 45.1 bits (105), Expect = 1e-05
Identities = 19/33 (57%), Positives = 24/33 (72%)
Frame = -3
Query: 192 FKDRCHDSYSYPQDDPTSTFTCPAGSNYKVVFC 224
FK+ C SYSY DDPTS FTC +G++Y + FC
Sbjct: 445 FKEACPTSYSYAYDDPTSIFTC-SGTDYVIAFC 350
>AW428867
Length = 375
Score = 42.4 bits (98), Expect = 7e-05
Identities = 27/82 (32%), Positives = 41/82 (49%), Gaps = 8/82 (9%)
Frame = +1
Query: 8 SLLLMLTASLVTLTRAANFEIVNNCPYTVWAAASPG--------GGRRLDRGQTWNLGVN 59
+L L+ S++ ++ AA N CP+ VW PG GG +L + ++L +
Sbjct: 82 TLFLISHISVLKVSAAAAI-FYNKCPHPVWPGIQPGPGKPVLARGGFKLLPNKAYSLQLP 258
Query: 60 AGTAMARIWGRTGCNFDGAGRG 81
A + R WGR C FD +GRG
Sbjct: 259 ALWS-GRFWGRHDCTFDASGRG 321
>AV410524
Length = 402
Score = 39.3 bits (90), Expect = 6e-04
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Frame = +3
Query: 9 LLLMLTASLVTLTRAANFEIVNNCPYTVWAA--ASPG---GGRRLDRGQTWNLGVNAGTA 63
+ L++ A F VN C +TVW P G L RG T + AG +
Sbjct: 183 IFLLILAFKGVRISGTTFTFVNKCDHTVWPGILGKPDLETTGFELKRGNTRTIPAPAGWS 362
Query: 64 MARIWGRTGCNFD 76
R W RTGC FD
Sbjct: 363 -GRFWARTGCKFD 398
>CB827268
Length = 533
Score = 32.0 bits (71), Expect = 0.099
Identities = 17/59 (28%), Positives = 24/59 (39%), Gaps = 1/59 (1%)
Frame = -2
Query: 22 RAANFEIVNNCPYTVWAAASPG-GGRRLDRGQTWNLGVNAGTAMARIWGRTGCNFDGAG 79
R F+I + +W A G G + G W + +G +WG GC F G G
Sbjct: 253 RRVGFQIWGGGRFALWVALGMG*GWVCVGSGFEWAVVCWSGLRWGWLWGEVGCGFGGVG 77
>AV409790
Length = 421
Score = 32.0 bits (71), Expect = 0.099
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +2
Query: 7 SSLLLMLTASLVTLT--RAANFEIVNNCPYTVWAAASPGGG 45
SS +++T L+T T RA F +N C YTVW G
Sbjct: 212 SSYFILITLLLLTPTGVRATTFTFLNRCDYTVWPGILANAG 334
>TC11589 similar to UP|Q9FVH1 (Q9FVH1) Transaldolase, partial (39%)
Length = 648
Score = 28.9 bits (63), Expect = 0.84
Identities = 11/24 (45%), Positives = 15/24 (61%)
Frame = +3
Query: 73 CNFDGAGRGRCQTGDCTGGLNCQG 96
C +GAGRGR + C G+ C+G
Sbjct: 300 CTVEGAGRGRERHRKCLLGIGCEG 371
>AV409746
Length = 411
Score = 28.5 bits (62), Expect = 1.1
Identities = 19/59 (32%), Positives = 24/59 (40%)
Frame = -2
Query: 40 ASPGGGRRLDRGQTWNLGVNAGTAMARIWGRTGCNFDGAGRGRCQTGDCTGGLNCQGWG 98
AS RRL R + W + + G R GC GRGRC++ GWG
Sbjct: 398 ASGREARRLGRSR*WGMS*SGGGRPGR-----GCRRHRRGRGRCRS-------RSSGWG 258
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.140 0.475
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,849,933
Number of Sequences: 28460
Number of extensions: 100074
Number of successful extensions: 422
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of query: 243
length of database: 4,897,600
effective HSP length: 88
effective length of query: 155
effective length of database: 2,393,120
effective search space: 370933600
effective search space used: 370933600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0304.6