Lotus
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0304.11
         (1797 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18710                                                               242  4e-64
AV780705                                                              191  1e-48
TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, p...   188  6e-48
TC19704 weakly similar to UP|Q9SZ87 (Q9SZ87) RNA-directed DNA po...   164  1e-40
CN825682                                                              120  1e-30
BP060613                                                               96  1e-20
AU251850                                                               72  8e-13
AV778296                                                               45  7e-11
AV767121                                                               55  7e-08
TC12829                                                                47  3e-05
TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%)             45  8e-05
AV768875                                                               44  2e-04
BP056651                                                               42  9e-04
TC17695 homologue to UP|Q41891 (Q41891) ZEM1 (Fragment), partial...    37  0.021
TC15704 similar to UP|O22265 (O22265) Expressed protein (At2g474...    36  0.061
AV780221                                                               35  0.080
TC10496                                                                35  0.14
BP038355                                                               27  0.19
BP067424                                                               31  1.5
TC13129 similar to UP|RIR2_TOBAC (P49730) Ribonucleoside-diphosp...    31  2.0

>TC18710 
          Length = 843

 Score =  242 bits (617), Expect = 4e-64
 Identities = 117/234 (50%), Positives = 165/234 (70%)
 Frame = +2

Query: 860  EEIKVVAHSMDSLKAPGPDGLNGLFFKTHWNVVGPEVCSVVHSFFNTSTLSPCINETLVA 919
            ++++++   +++ +  G DG+NGLF++ + +VV   V   + +F   + +   INETLV 
Sbjct: 140  KKLRLLFFLLETSQPRGMDGMNGLFYQKNGDVVKDSVT*AILAFLERAEIPNEINETLVT 319

Query: 920  LVPKIPSLEMANQYRPISCCNYLYKIISKVIVARLKGELNDIITPNQSAFIKDRLIQDNI 979
            L+PK+P  E  NQ+RPIS C +LYK+ISK+ VARLK  + D+I+P QS FI+ R IQDN+
Sbjct: 320  LIPKVPHPESINQFRPISGCTFLYKVISKIFVARLKDAMPDLISPMQSGFIQGRQIQDNL 499

Query: 980  LIAHEIFHALQHRGREHKDHLAIKLDMSKAYDRVEWEFLEKALLAYGFCGPWVSLVMNLV 1039
            LI  E FHA+   G   ++H  IKLDM+KAYDRVEW+FLE +LLA+GF   WV ++M LV
Sbjct: 500  LIVQEAFHAINRPGALGRNHSIIKLDMNKAYDRVEWKFLESSLLAFGFSTNWVKMIMILV 679

Query: 1040 RGVSYKYKVNGYLSRKYIPQRGLRQGDPLSPYLFVLVMDVLSHMILQAKNQGHI 1093
             GVSY YK+NG +  K +PQRGLRQGDP SPYLF+  M+VLS +I  + N G++
Sbjct: 680  SGVSYNYKINGVVGPKLLPQRGLRQGDPFSPYLFLFTMEVLSLLIQNSFNMGNL 841



 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 23/42 (54%), Positives = 26/42 (61%)
 Frame = +1

Query: 835 QECLSCVPKLIPTDLNNKLMETVTDEEIKVVAHSMDSLKAPG 876
           +ECL  VP L+  DLN KL   VT EEIK V  S+  L APG
Sbjct: 64  RECLDVVPSLVSQDLNQKLESQVTSEEIKAVVFSLGDLTAPG 189


>AV780705 
          Length = 524

 Score =  191 bits (484), Expect = 1e-48
 Identities = 89/178 (50%), Positives = 120/178 (67%), Gaps = 5/178 (2%)
 Frame = -2

Query: 1166 NIFQIPTWEEPGHYLGLPAVWGRSKTRALAWIKERMKEKIAGWKEVLLNQAGKEVLIKSV 1225
            N+  +P W++PGHYLGLPA+WGR+K+ +L WI+E++KEK+ GWKE LLNQAGKEVLIK++
Sbjct: 523  NLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKETLLNQAGKEVLIKAI 344

Query: 1226 IQSIPTYAMAVTPFPKGFCKELDSLVARFWWSNNKKSRGIHLKDWHSLT-----CSKKEG 1280
            IQ+IP+YAM +  FPK FC  L +LVA FWW    KS+G    ++          SK++G
Sbjct: 343  IQAIPSYAMTIVHFPKTFCNSLYALVADFWW----KSQGEGAVEYTGAVGTK*PLSKEKG 176

Query: 1281 GMGFREFHLQNLAHMTKQAWRIHNTPHTLVAQVMKALYFPDSSFLDATPKPGDSWMWR 1338
            G+GFR+   QNLA + +QAWR+   P  L  +VMK+LYFP  +           WMWR
Sbjct: 175  GVGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPTPALCLLLWDGTHPWMWR 2


>TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, partial
           (14%)
          Length = 592

 Score =  188 bits (478), Expect = 6e-48
 Identities = 91/188 (48%), Positives = 130/188 (68%)
 Frame = -3

Query: 777 GDRNTHFFHATTIQRRGRNRIHRLKDGTGSWIEGQEGVMENITDHFQLIFKSEQVTQIQE 836
           GD NT FFHA+TIQRR  NRI ++KD  G W+EGQ+ V E   ++F  I+ S  +  ++E
Sbjct: 569 GDHNTRFFHASTIQRRDFNRILKIKDAHGIWVEGQKKVNEAAVNYFSDIYSSSPLQYLRE 390

Query: 837 CLSCVPKLIPTDLNNKLMETVTDEEIKVVAHSMDSLKAPGPDGLNGLFFKTHWNVVGPEV 896
           CL+ +PKL+   LN+KL   V+ +EIK    SM  LKAPG DG+NGLF++ +  +V  +V
Sbjct: 389 CLAPIPKLVTDRLNHKLCAQVSTDEIKEAVFSMGDLKAPGMDGINGLFYQQNREIVKNDV 210

Query: 897 CSVVHSFFNTSTLSPCINETLVALVPKIPSLEMANQYRPISCCNYLYKIISKVIVARLKG 956
            + +  FF+   L   +NETLV L+PKIP  E   Q+RPISCC+++YK+ISK+IVARLK 
Sbjct: 209 NNAILDFFDHGELPVELNETLVTLIPKIPHAEAIQQFRPISCCSFIYKVISKIIVARLKP 30

Query: 957 ELNDIITP 964
           ++ ++I+P
Sbjct: 29  DMVNLISP 6


>TC19704 weakly similar to UP|Q9SZ87 (Q9SZ87) RNA-directed DNA
           polymerase-like protein, partial (3%)
          Length = 530

 Score =  164 bits (414), Expect = 1e-40
 Identities = 76/176 (43%), Positives = 111/176 (62%), Gaps = 1/176 (0%)
 Frame = -3

Query: 676 DCSKVVEDAW-NTTPQGENDWETLQNKVKSCQIGLTKWQKVTFSRADKEIEKLKARLSSM 734
           +C + ++ AW NT+    +    L  K  + ++ LT+W    FSRADKEI +LK +L  +
Sbjct: 528 ECKETIKKAWDNTSETASSHCSNLSGKTTNTKLALTEWHHQNFSRADKEIAELKNQLEHL 349

Query: 735 HNEDHHKIDWNEMAQFKAQIRQLWRQEELFWSTRSRLQWAQWGDRNTHFFHATTIQRRGR 794
            N  +   DW E+ Q K +++ LWRQEELFWS RSR++W + GD+NT FFHA+T+QRR R
Sbjct: 348 QNYSNSGEDWQEIKQRKMRLKDLWRQEELFWSQRSRIKWLKSGDKNTKFFHASTVQRRER 169

Query: 795 NRIHRLKDGTGSWIEGQEGVMENITDHFQLIFKSEQVTQIQECLSCVPKLIPTDLN 850
           NRI R+KD  G+W+  Q  +  ++ D +  I+KS     I ECL+ VP++I   LN
Sbjct: 168 NRIERIKDMQGTWVRSQLAINRDVPDFYPDIYKSTNRQNITECLNAVPRVIYESLN 1


>CN825682 
          Length = 626

 Score =  120 bits (302), Expect(2) = 1e-30
 Identities = 51/95 (53%), Positives = 68/95 (70%)
 Frame = -3

Query: 556 WCCLGDFNETLYQHEKDGLHPQSQQSLNRFRSFVDSNALANIDIKGCKYTWLSNPREGFV 615
           W C GDFNE L+  EK+G   Q    +  FR F+D   L ++++KGC++TWLSN R G V
Sbjct: 300 WTCYGDFNEILHHQEKEGARDQDPTRIQVFRDFLDGANLMDLELKGCRFTWLSNLRNGLV 121

Query: 616 TREKLDRVLSNWSWRSLYPHALVVALPVVSSDHSP 650
           T+E+LDRVL NW+WR  YP+A  +ALP++SSDHSP
Sbjct: 120 TKERLDRVLVNWTWRLDYPNATAMALPIISSDHSP 16



 Score = 31.2 bits (69), Expect(2) = 1e-30
 Identities = 24/67 (35%), Positives = 33/67 (48%)
 Frame = -1

Query: 482 VDPIGTAGGLALFWNKECTVEILDSNQNYIHVMITEKEKVIGAEYTFIYGEPLRQRRQAL 541
           +DPI       L+W  +C     D  Q   HV    KE V+G   TFIY  P+ ++R+ L
Sbjct: 485 IDPI------RLWWPIKCVKH--DKIQPQPHVW-PNKEIVLG---TFIYANPIFRQRRNL 342

Query: 542 WDSISRL 548
           W  I+ L
Sbjct: 341 WPQITSL 321


>BP060613 
          Length = 378

 Score = 95.5 bits (236), Expect(2) = 1e-20
 Identities = 42/83 (50%), Positives = 56/83 (66%)
 Frame = +1

Query: 1255 WWSNNKKSRGIHLKDWHSLTCSKKEGGMGFREFHLQNLAHMTKQAWRIHNTPHTLVAQVM 1314
            WWS+ K +RG+H + W  LT  K EGG+GF++F +QN A + KQAWRI + P  L  Q++
Sbjct: 46   WWSS-KGTRGVHWRKWDLLTELKDEGGLGFKDFEIQNQALLAKQAWRILHNPDALWVQIL 222

Query: 1315 KALYFPDSSFLDATPKPGDSWMW 1337
            KALYFP   FL  T + G SW+W
Sbjct: 223  KALYFPHHDFLQTTKRTGASWVW 291



 Score = 22.7 bits (47), Expect(2) = 1e-20
 Identities = 10/15 (66%), Positives = 11/15 (72%)
 Frame = +2

Query: 1240 PKGFCKELDSLVARF 1254
            PK  CK+L S VARF
Sbjct: 2    PKTXCKDLCSRVARF 46


>AU251850 
          Length = 343

 Score = 72.0 bits (175), Expect = 8e-13
 Identities = 34/101 (33%), Positives = 58/101 (56%), Gaps = 4/101 (3%)
 Frame = +2

Query: 423 SMRLISWNCRGVGASTTARELKEINSKQKPSILFLMETRARRNKIERLKFALHFSNFFCV 482
           +M+L+SWNCRG+G+      L+ +  K+ P ++FLMET+ ++ + E++      SN   V
Sbjct: 35  AMKLLSWNCRGLGSPRAVEALQRLVRKEIPQLVFLMETKLKKFETEKISLGFGLSNCLIV 214

Query: 483 DPIG----TAGGLALFWNKECTVEILDSNQNYIHVMITEKE 519
           D +G      GGLA++WN    V ++  + N+I V   E +
Sbjct: 215 DCVGDEKERKGGLAMWWNASVDVSLVSFSGNHIVVACVEDD 337


>AV778296 
          Length = 408

 Score = 45.4 bits (106), Expect(2) = 7e-11
 Identities = 17/29 (58%), Positives = 25/29 (85%)
 Frame = +3

Query: 608 SNPREGFVTREKLDRVLSNWSWRSLYPHA 636
           S P  GFVTREK++RV+++W WR+L+P+A
Sbjct: 144 SKPGGGFVTREKIERVVADWEWRALFPNA 230



 Score = 40.0 bits (92), Expect(2) = 7e-11
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +2

Query: 661 SGRQFKYEAFWNEHKDCSKVVEDAWNTTPQGEND 694
           SG QFKYE   +EH +C +V+  AW  TP  +N+
Sbjct: 305 SGVQFKYERVGDEHVECKEVINKAWAETPDMDNE 406



 Score = 35.8 bits (81), Expect = 0.061
 Identities = 23/69 (33%), Positives = 36/69 (51%), Gaps = 9/69 (13%)
 Frame = +1

Query: 599 IKGCKYTWLSNPREGFVTREK----LDRVLSNWSWRS----LYPHAL-VVALPVVSSDHS 649
           +  CK+   S  +  ++  +     L+R LS W W++    LY   L   A P +SSDHS
Sbjct: 94  LSSCKHYVCSRQKTQYLASQGGVL*LERRLSGW-WQTGNGELYSLMLKATAYPPISSDHS 270

Query: 650 PLILDPVPK 658
           P++ +P PK
Sbjct: 271 PMVFEPSPK 297


>AV767121 
          Length = 525

 Score = 55.5 bits (132), Expect = 7e-08
 Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 9/140 (6%)
 Frame = +2

Query: 1205 IAGWKEVLLNQAGKEVLIKSVIQSIPTYAMAVTPFPKGFCKELDSLVARFWWSNNKKSRG 1264
            ++ WK+  ++  G+  LI+SV+ ++P + ++    P G  K    L+  F W  ++    
Sbjct: 2    LSKWKQKTVSFGGRIFLIQSVLTALPLFFLSFFKLPIGVGKSCVRLMRNFLWGGSENENK 181

Query: 1265 IHLKDWHSLTCSKKEGGMGFREFHLQNLAHMTKQAWRIHNTPHTLVAQVMKALYFPD--- 1321
            I    W  +   K+ GG+G ++    N A + K  WR    P +L  +V++A   PD   
Sbjct: 182  IA*VKWTDVCKPKELGGLGIKDLFTFNKALLGK*RWRYLTEPDSLWRRVIEAQ--PDHYS 355

Query: 1322 ------SSFLDATPKPGDSW 1335
                  +  L   P+  D W
Sbjct: 356  CGSSWWNDILSLCPEDADGW 415


>TC12829 
          Length = 448

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 20/46 (43%), Positives = 31/46 (66%)
 Frame = +3

Query: 1210 EVLLNQAGKEVLIKSVIQSIPTYAMAVTPFPKGFCKELDSLVARFW 1255
            E  L +AG+EVLIKSV ++IPTY M+    P   C +++ +V +F+
Sbjct: 252  EKFLYRAGREVLIKSVTKAIPTYIMSCFALPDSICSQIEGMVGKFY 389


>TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%)
          Length = 912

 Score = 45.4 bits (106), Expect = 8e-05
 Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 7/140 (5%)
 Frame = -3

Query: 1097 KLSPSTP---C----ITHLFFADDSLVFAKATQQEAYHFVQLLNTFSSASSQRINTSKSS 1149
            ++SP +P   C    I+HL FAD+ +VF+    +       +L+ F   S    N +KS 
Sbjct: 418  RISPQSPHWRCQNEEISHLCFADNLMVFSNGYLESIAIINNVLHIFQHLSGLTPNPAKSE 239

Query: 1150 MSTSKHIPTLLKTQMTNIFQIPTWEEPGHYLGLPAVWGRSKTRALAWIKERMKEKIAGWK 1209
            +     +    K Q+TN+      + P   LG+P +  + K      + +R   K+  W 
Sbjct: 238  VFIL--VKETTKNQITNMLGYKEGKLPVR*LGVPQLTTKLKASDCKVLVDRKPSKLQHWT 65

Query: 1210 EVLLNQAGKEVLIKSVIQSI 1229
               L+ AG+  LI S++ S+
Sbjct: 64   GRSLSYAGRLQLINSILFSM 5


>AV768875 
          Length = 232

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 23/72 (31%), Positives = 36/72 (49%), Gaps = 2/72 (2%)
 Frame = +1

Query: 537 RRQALWDSISRLKPLAQGPWCCLGDFNETLYQHEKDG--LHPQSQQSLNRFRSFVDSNAL 594
           +R  LW  +S ++     PW  +GD NE L+  +  G   HP   Q   RF + +D   L
Sbjct: 1   QRDILWQHLSTIRASISIPWLLIGDMNEILFPSQVRGGEFHPNRAQ---RFATVLDDCNL 171

Query: 595 ANIDIKGCKYTW 606
            ++ + G K+TW
Sbjct: 172 IDLGMVGGKFTW 207


>BP056651 
          Length = 564

 Score = 42.0 bits (97), Expect = 9e-04
 Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 5/128 (3%)
 Frame = +1

Query: 488 AGGLALFWNKEC-TVEILDSNQNYIHVMITEKEKVIGAEYTFIYGEPLRQRRQALWDSIS 546
           AGGL   W     TVE     + ++   +  K K +      +Y    R  ++ LW+ + 
Sbjct: 106 AGGLLCVWKPSVFTVEECFLGEGFLG--LKGKWKGVSCVIINVYSPCSRGEKRQLWEDLK 279

Query: 547 RLKP-LAQGPWCCLGDFNETLYQHEKDGLHPQSQQ---SLNRFRSFVDSNALANIDIKGC 602
            L+  L +  WC  GDFN      E+ G H +       +  F  F+D            
Sbjct: 280 ALRRRLEEDIWCMAGDFNSVRRSEERRGTHGEGSSGAGEMEEFNDFID------------ 423

Query: 603 KYTWLSNP 610
           ++ W+++P
Sbjct: 424 EWNWMTSP 447


>TC17695 homologue to UP|Q41891 (Q41891) ZEM1 (Fragment), partial (6%)
          Length = 510

 Score = 37.4 bits (85), Expect = 0.021
 Identities = 22/52 (42%), Positives = 25/52 (47%), Gaps = 7/52 (13%)
 Frame = -1

Query: 398 IPQRTFLSKFCYH-------GWGGGH*SAPNVSMRLISWNCRGVGASTTARE 442
           IPQ T  +  C         G GGG    PN  M L SWNCRG+ A+ T  E
Sbjct: 156 IPQETTAAIPCRRVKFYN*KG*GGGPIHGPNA*MSLFSWNCRGLAAAATIDE 1


>TC15704 similar to UP|O22265 (O22265) Expressed protein
           (At2g47450/T30B22.25), partial (25%)
          Length = 664

 Score = 35.8 bits (81), Expect = 0.061
 Identities = 34/112 (30%), Positives = 43/112 (38%), Gaps = 4/112 (3%)
 Frame = -1

Query: 232 PYPSTGPKKLILPIHT*PKSPAHQHKLPLSRGLYWNGPQES*PTTTTE*KSRGPTPFYPT 291
           P+    PK  +    T*P +P   H  P   G      Q   P   T    R P+P  P 
Sbjct: 361 PHSPRAPKWAVPNQPT*PTAPTSPH--PQLSG------QPPPPPPRTPAPPRNPSPDPP- 209

Query: 292 SCFELIPKTSYS----HHDPTPLEEPPQNHPKKPNPIKLLRRVPSRRRRRTP 339
                 P+TS+S    HH P+   + P +HP    PI      P   R RTP
Sbjct: 208 ------PQTSHSPTRFHHRPSTARDTPNSHPSPSAPIS-----PPPPRTRTP 86


>AV780221 
          Length = 461

 Score = 35.4 bits (80), Expect = 0.080
 Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
 Frame = +3

Query: 1221 LIKSVIQSIPTYAMAVTPFPKG-FCKELDSLVARFWWSNNKKSRGIHLKDWHSLTCSKKE 1279
            LI+SV+ ++P + +     P G F   +++    F+    +  + I    W ++   K E
Sbjct: 9    LIRSVLIALPLFHLPFFKLPTGGFYTNVNN**DPFFGREVEGGKKIAWVKWSTVCRPKDE 188

Query: 1280 GGMGFREFHLQNLAHMTKQAWRIHNTPHTLVAQVMKALYFPDSSFLDATPKPGDSW 1335
            GG+G +   L N A + K  WR+      L  +V+   Y       +A P+   SW
Sbjct: 189  GGLGVQNLGLFNKALLGKWRWRMLKERDGLWYKVLLIKY------KNAIPQSASSW 338


>TC10496 
          Length = 562

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 429 WNCRGVGASTTARELKEINSKQKPSILFLMETRARRNK 466
           WN RG+G+ST     K+I  K KP +  L E++   N+
Sbjct: 444 WNVRGLGSSTKREAAKKILLKIKPEVCLLQESKLDENR 557


>BP038355 
          Length = 549

 Score = 26.6 bits (57), Expect(2) = 0.19
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 1251 VARFWWSNNKKSRGIHLKDWHSLTCSKKEGGMGFR 1285
            +AR W     K RG H  + H+L+ ++KE G+G R
Sbjct: 97   LARLW*YG--KDRGTH*VNLHTLSANRKEIGIGSR 195



 Score = 26.2 bits (56), Expect(2) = 0.19
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 1216 AGKEVLIKSVIQSIPTYAMAVTPFPKGF 1243
            +GK VL +S   S PTYA ++  FPK F
Sbjct: 3    SGKGVL*RSKF-STPTYAFSIRKFPKHF 83


>BP067424 
          Length = 473

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
 Frame = +3

Query: 300 TSYSHHDPTPLEEPPQNHPKK-----PNPIKLLRRVPSRR---RRRTPKK 341
           T+ SHH    L  PP   P +     P P +LLRR   RR   RRRTP +
Sbjct: 309 TAPSHHHEKLLHRPPLQPPHRQPHRLPWPYRLLRRGIHRRASLRRRTPPR 458


>TC13129 similar to UP|RIR2_TOBAC (P49730) Ribonucleoside-diphosphate
           reductase small chain  (Ribonucleotide reductase) (R2
           subunit) , partial (46%)
          Length = 482

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 22/68 (32%), Positives = 31/68 (45%)
 Frame = +3

Query: 267 NGPQES*PTTTTE*KSRGPTPFYPTSCFELIPKTSYSHHDPTPLEEPPQNHPKKPNPIKL 326
           + P    P+T +  +SR  TP    SC +   +T        PL+ P  + P KP+P   
Sbjct: 297 SNPPRHAPSTASRSRSRTSTPRCTASC*KPTSRT--------PLKNPTSSAPWKPSPAS- 449

Query: 327 LRRVPSRR 334
            RR PS R
Sbjct: 450 -RRKPSGR 470


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.331    0.143    0.482 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,500,427
Number of Sequences: 28460
Number of extensions: 626470
Number of successful extensions: 4377
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 4203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4353
length of query: 1797
length of database: 4,897,600
effective HSP length: 103
effective length of query: 1694
effective length of database: 1,966,220
effective search space: 3330776680
effective search space used: 3330776680
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 62 (28.5 bits)


Lotus: description of TM0304.11