TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0302a.8
         (578 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP038017                                                              109  1e-24
TC16246 weakly similar to UP|Q8S2M2 (Q8S2M2) Far-red impaired re...    91  5e-19
CN825057                                                               88  3e-18
AV425218                                                               85  3e-17
AV776853                                                               83  1e-16
TC12114 weakly similar to GB|BAC16510.1|23237937|AP005198 transp...    78  3e-15
AV409041                                                               42  4e-04
AV423237                                                               37  0.011
AV780484                                                               30  1.1
AV409413                                                               27  7.0
TC11097 similar to UP|P93520 (P93520) Calcium/calmodulin-depende...    27  7.0
TC12373                                                                27  7.0
BP083090                                                               27  7.0
TC17617 weakly similar to UP|Q84SA8 (Q84SA8) Laccase (Fragment),...    27  7.0

>BP038017 
          Length = 570

 Score =  109 bits (273), Expect = 1e-24
 Identities = 49/131 (37%), Positives = 78/131 (59%)
 Frame = +2

Query: 194 DAEFAISYIRGLGSKDPLLYCRHVANDDGNLDRLFWSDGISQLNYQVFGDVVAFDATYGK 253
           DA+  ++Y + +  K+P  Y     +D+  +  +FW+D  S+  Y  FGD V FD  Y  
Sbjct: 167 DAQNLLNYFKKMQGKNPGFYYAIQLDDENRMINVFWADARSRSAYNYFGDAVIFDTMYRP 346

Query: 254 NRYKCPFVVFYGVNHHNKSTIFSTALVSNEKIETYVWLLERFLEAMKGKAPLFVITDGDK 313
           N+Y+ PF  F GVNHH ++ +F  AL+ +E   ++ WL   +L AM  + P+ + TD D+
Sbjct: 347 NQYQVPFAPFTGVNHHGQNVLFGCALLLDESESSFTWLFRTWLSAMNDRPPVSITTDQDR 526

Query: 314 AMKAAIKQVFP 324
           A++AA+ QVFP
Sbjct: 527 AIQAAVAQVFP 559


>TC16246 weakly similar to UP|Q8S2M2 (Q8S2M2) Far-red impaired response
           protein-like, partial (4%)
          Length = 660

 Score = 90.9 bits (224), Expect = 5e-19
 Identities = 44/125 (35%), Positives = 71/125 (56%)
 Frame = +2

Query: 142 NNMSRSGISTPQIHNTFASQTGGYQKVRFSKGNMYNVQGRQRRMKKKEPEKTDAEFAISY 201
           + M+  G+    I        GG++ + F+K ++ N      + K++  +  DA  A+SY
Sbjct: 2   DGMNLYGVRACHIMALMLGPKGGHESLGFTKTDLSN---HIAKPKRERIQNGDAAAALSY 172

Query: 202 IRGLGSKDPLLYCRHVANDDGNLDRLFWSDGISQLNYQVFGDVVAFDATYGKNRYKCPFV 261
           + G    DP+ + +     D +L+ LFW DG+S+++Y VFGDV+AFD+TY KN+Y  P V
Sbjct: 173 LEGKADNDPMFFYKFTKTGDESLENLFWCDGVSRMDYNVFGDVIAFDSTYKKNKYNKPLV 352

Query: 262 VFYGV 266
           VF  V
Sbjct: 353 VFLHV 367


>CN825057 
          Length = 721

 Score = 88.2 bits (217), Expect = 3e-18
 Identities = 66/244 (27%), Positives = 108/244 (44%), Gaps = 1/244 (0%)
 Frame = +1

Query: 27  AYLFYHWYG*VNGFAVR-KYIKIHNKEGLVIQRNFVCHKEGLREDRGLTMDKRQRESRTD 85
           AY FY  Y    GF    K  +   K    I   F C + G+  +     ++R    +TD
Sbjct: 1   AYSFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDGGSNRRSSVKKTD 180

Query: 86  FRCGCTAKFRVHIDKTNGRWYAKLFSDEHNHELEDDKMCGMIAAHRKMNESDIMHMNNMS 145
               C A   V   K +G+W    F  EHNHEL    +      HR +  ++  +M+ + 
Sbjct: 181 ----CKACMHVK-RKPDGKWIIHEFIKEHNHELLP-ALAYHFRIHRNVKLAEKNNMDILH 342

Query: 146 RSGISTPQIHNTFASQTGGYQKVRFSKGNMYNVQGRQRRMKKKEPEKTDAEFAISYIRGL 205
                T +++   + Q+GG   +    G++ +   + + +   E    DA+  + Y + +
Sbjct: 343 AVSERTRKMYVEMSRQSGGCLNIESLVGDLNDQFKKGQYLAMDEG---DAQVMLEYFKHI 513

Query: 206 GSKDPLLYCRHVANDDGNLDRLFWSDGISQLNYQVFGDVVAFDATYGKNRYKCPFVVFYG 265
             ++P  +     N++  L  +FW D  S  +Y  F DVV+FD +Y K+  K PF  F G
Sbjct: 514 QKENPNFFYSIDLNEEQRLRNIFWIDAKSINDYLSFNDVVSFDTSYIKSNEKLPFAPFVG 693

Query: 266 VNHH 269
           VNHH
Sbjct: 694 VNHH 705


>AV425218 
          Length = 419

 Score = 85.1 bits (209), Expect = 3e-17
 Identities = 42/123 (34%), Positives = 64/123 (51%), Gaps = 4/123 (3%)
 Frame = +2

Query: 259 PFVVFYGVNHHNKSTIFSTALVSNEKIETYVWLLERFLEAMKGKAPLFVITDGDKAMKAA 318
           P     GVNHH +S +F  AL+S+E  E++VWL +  L  M G  P  +ITD  +AMK A
Sbjct: 5   PLATLVGVNHHGQSVLFGCALLSSEDSESFVWLFQSLLHCMSGVPPQGIITDHSEAMKKA 184

Query: 319 IKQVFPNAHHRLCAWHILDNARK----HVHIRAFNTELRKCMFMELDVSEFEEHWAATVA 374
           I+ V P+  HR C  +I+    +    +    +    L+  ++  + + EFE +W   V 
Sbjct: 185 IETVLPSTRHRWCLSYIMKKLPQKLLGYAQYESIRHHLQNVVYDAVVIDEFERNWKKIVE 364

Query: 375 KFG 377
            FG
Sbjct: 365 DFG 373


>AV776853 
          Length = 625

 Score = 83.2 bits (204), Expect = 1e-16
 Identities = 45/123 (36%), Positives = 61/123 (49%)
 Frame = +1

Query: 15  DLMKYDFLDSEVAYLFYHWYG*VNGFAVRKYIKIHNKEGLVIQRNFVCHKEGLREDRGLT 74
           D+   DF   E AY FY  Y    GF VRK     +  G V  R FVC+++GLR  +   
Sbjct: 226 DIRHLDFGSEEEAYQFYQAYAKYQGFIVRKDDIGRDYHGNVNMRQFVCNRQGLRSKKHYN 405

Query: 75  MDKRQRESRTDFRCGCTAKFRVHIDKTNGRWYAKLFSDEHNHELEDDKMCGMIAAHRKMN 134
              R+R+ +      C AK RVH+D   G+W    F + HNHEL   +    I  +R MN
Sbjct: 406 RTDRKRDHKPVTHTNCLAKLRVHLDYKIGKWKVVSFEECHNHELTPARFVHFIPPYRVMN 585

Query: 135 ESD 137
           ++D
Sbjct: 586 DAD 594


>TC12114 weakly similar to GB|BAC16510.1|23237937|AP005198 transposase-like
           {Oryza sativa (japonica cultivar-group);}, partial (8%)
          Length = 488

 Score = 78.2 bits (191), Expect = 3e-15
 Identities = 38/107 (35%), Positives = 59/107 (54%)
 Frame = +1

Query: 194 DAEFAISYIRGLGSKDPLLYCRHVANDDGNLDRLFWSDGISQLNYQVFGDVVAFDATYGK 253
           +A + + Y +    ++   Y  +  +D+  +  +FW D    ++Y  FGD+V+ D+TY  
Sbjct: 43  EAGYILQYFQRKLVENSPFYHAYQLDDEDQITNVFWVDARMLIDYGYFGDMVSLDSTYCT 222

Query: 254 NRYKCPFVVFYGVNHHNKSTIFSTALVSNEKIETYVWLLERFLEAMK 300
           +    P  VF G NHH K+ IF  AL+ +E  E+Y WL E FLEA K
Sbjct: 223 HSSNRPLAVFSGFNHHRKAVIFGAALLYDETTESY*WLFESFLEAHK 363


>AV409041 
          Length = 349

 Score = 41.6 bits (96), Expect = 4e-04
 Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 1/100 (1%)
 Frame = +3

Query: 20  DFLDSEVAYLFYHWYG*VNGFAVRKYIKIHNKEGL-VIQRNFVCHKEGLREDRGLTMDKR 78
           +F   E AY FY  Y    GF   K     ++     I   F C + G ++     ++ R
Sbjct: 48  EFESHEAAYAFYKEYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDAINPR 227

Query: 79  QRESRTDFRCGCTAKFRVHIDKTNGRWYAKLFSDEHNHEL 118
                   + GC A   V   + +G+WY   F  EHNHEL
Sbjct: 228 PSP-----KIGCKASMHVK-RRQDGKWYVYSFVKEHNHEL 329


>AV423237 
          Length = 310

 Score = 36.6 bits (83), Expect = 0.011
 Identities = 20/62 (32%), Positives = 32/62 (51%)
 Frame = +2

Query: 230 SDGISQLNYQVFGDVVAFDATYGKNRYKCPFVVFYGVNHHNKSTIFSTALVSNEKIETYV 289
           +D  S++NY  FGD V FD T   + +       +G +      I+  AL++NE   ++V
Sbjct: 14  ADATSRMNYSYFGDAVIFDTTI--DNHIESICSSWG*SSWATCVIWLVALIANESESSFV 187

Query: 290 WL 291
           WL
Sbjct: 188 WL 193


>AV780484 
          Length = 529

 Score = 30.0 bits (66), Expect = 1.1
 Identities = 14/38 (36%), Positives = 21/38 (54%)
 Frame = -1

Query: 223 NLDRLFWSDGISQLNYQVFGDVVAFDATYGKNRYKCPF 260
           +L  +FW D   +L+Y+    +V     Y KN+YK PF
Sbjct: 124 HLTSVFWVDIKGRLDYETSMMLVLIHTHYLKNKYKIPF 11


>AV409413 
          Length = 422

 Score = 27.3 bits (59), Expect = 7.0
 Identities = 20/77 (25%), Positives = 36/77 (45%), Gaps = 1/77 (1%)
 Frame = +2

Query: 118 LEDDKMCGMIAAHRKMNESDIMHMNNMSRS-GISTPQIHNTFASQTGGYQKVRFSKGNMY 176
           + +D++ G  + + K+ E +I+  +   RS G       N     T        + GNM 
Sbjct: 23  VSEDELKGFFSKYGKVVEHEIIRDHTTKRSRGFGFIVFDNEKVVDT------ILTDGNMI 184

Query: 177 NVQGRQRRMKKKEPEKT 193
           ++ G Q  +KK EP+K+
Sbjct: 185 DMAGTQVEIKKAEPKKS 235


>TC11097 similar to UP|P93520 (P93520) Calcium/calmodulin-dependent protein
           kinase homolog|CaM kinase homolog|MCK1, partial (36%)
          Length = 949

 Score = 27.3 bits (59), Expect = 7.0
 Identities = 19/74 (25%), Positives = 33/74 (43%)
 Frame = -1

Query: 88  CGCTAKFRVHIDKTNGRWYAKLFSDEHNHELEDDKMCGMIAAHRKMNESDIMHMNNMSRS 147
           C CT  F++H+  + G+W+  ++ D  N  L     C     H ++ + D+        S
Sbjct: 556 CSCTKFFKIHL--SIGKWFHHMY-DIKNP*LPHGISCMTCKGHFEIIKGDVPISIRFQ*S 386

Query: 148 GISTPQIHNTFASQ 161
            +  P+IH  F  Q
Sbjct: 385 EL-RPKIHQLFLCQ 347


>TC12373 
          Length = 450

 Score = 27.3 bits (59), Expect = 7.0
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 111 SDEHNHELEDDKMCGMIAAHRKMNESDIMHMNNMSRSGISTPQI 154
           S+  N  + +  M G       MN S IMH+++ SR+ ++TP I
Sbjct: 60  SERANRLIVERFMIGSSEYMHPMNFSTIMHLDSTSRT*LATPLI 191


>BP083090 
          Length = 465

 Score = 27.3 bits (59), Expect = 7.0
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = -3

Query: 336 LDNARKHVHIRAFNTELRKCMFMELDVSEFEEHWAATVAKFGWKKILGLRNYMKEE*CGL 395
           LD   +H H+  F +  R C    L +   + + AA +  F WK   G      EE  GL
Sbjct: 304 LDLRGQHFHLIPFGSGRRGCPGTSLALQVVQTNLAAMIQCFEWKVSGGKERVDMEEKLGL 125


>TC17617 weakly similar to UP|Q84SA8 (Q84SA8) Laccase (Fragment), partial
           (53%)
          Length = 1139

 Score = 27.3 bits (59), Expect = 7.0
 Identities = 11/30 (36%), Positives = 16/30 (52%)
 Frame = +2

Query: 145 SRSGISTPQIHNTFASQTGGYQKVRFSKGN 174
           ++  +  PQI NT A   GG+  +RF   N
Sbjct: 737 AKFNLVNPQIRNTIAVPVGGWAVIRFQANN 826


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.340    0.149    0.499 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,190,319
Number of Sequences: 28460
Number of extensions: 138238
Number of successful extensions: 893
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of query: 578
length of database: 4,897,600
effective HSP length: 95
effective length of query: 483
effective length of database: 2,193,900
effective search space: 1059653700
effective search space used: 1059653700
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 58 (26.9 bits)