BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0302a.10
(243 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14795 homologue to UP|Q9LD28 (Q9LD28) Histone H2A, partial (97%) 28 1.4
TC14794 homologue to UP|Q43312 (Q43312) Histone H2A, complete 28 1.4
TC9704 similar to UP|AAQ10732 (AAQ10732) Delta-8-sphingolipid de... 27 4.2
TC8145 weakly similar to UP|Q94A38 (Q94A38) AT5g46250/MPL12_3, p... 27 4.2
TC14418 weakly similar to GB|AAB62722.1|2232239|AF005037 secreto... 26 5.4
AV773323 26 5.4
TC10776 26 7.1
BE122514 26 7.1
TC10429 similar to UP|Q9ZR46 (Q9ZR46) P69C protein, partial (52%) 26 7.1
BP080890 26 7.1
TC19501 25 9.3
AV408921 25 9.3
TC8565 homologue to UP|Q9AVQ9 (Q9AVQ9) Phosphate transporter, pa... 25 9.3
>TC14795 homologue to UP|Q9LD28 (Q9LD28) Histone H2A, partial (97%)
Length = 675
Score = 28.1 bits (61), Expect = 1.4
Identities = 19/56 (33%), Positives = 27/56 (47%), Gaps = 10/56 (17%)
Frame = +3
Query: 4 AGRGKTTGTSVTKKKMKSATGKLPLCIPLDKMV----------AVGPGAPDFVTEI 49
AGRGKT G+S KK S + K L P+ ++ VG GAP ++ +
Sbjct: 84 AGRGKTLGSSAA-KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAV 248
>TC14794 homologue to UP|Q43312 (Q43312) Histone H2A, complete
Length = 826
Score = 28.1 bits (61), Expect = 1.4
Identities = 19/56 (33%), Positives = 27/56 (47%), Gaps = 10/56 (17%)
Frame = +3
Query: 4 AGRGKTTGTSVTKKKMKSATGKLPLCIPLDKMV----------AVGPGAPDFVTEI 49
AGRGKT G+S KK S + K L P+ ++ VG GAP ++ +
Sbjct: 102 AGRGKTLGSSAA-KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAV 266
>TC9704 similar to UP|AAQ10732 (AAQ10732) Delta-8-sphingolipid desaturase,
partial (25%)
Length = 848
Score = 26.6 bits (57), Expect = 4.2
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -3
Query: 161 SEEDWEHLVDKFSSPTYKEMSARNKANKSKQVINHR 196
S E H+++ S P+ K R K + + ++NHR
Sbjct: 654 SRESHGHIINMCSDPSLKHEVPRKKHKQ*RTILNHR 547
>TC8145 weakly similar to UP|Q94A38 (Q94A38) AT5g46250/MPL12_3, partial (49%)
Length = 1671
Score = 26.6 bits (57), Expect = 4.2
Identities = 20/75 (26%), Positives = 33/75 (43%), Gaps = 2/75 (2%)
Frame = +1
Query: 147 ETNEMALEHKPDEISEEDWEHLVDKFSSPTYKEMSARNKANKSKQV--INHRCGRKSFQA 204
E N + EH D EED +HL Y+ R++ +K + V + H C + A
Sbjct: 979 EENHGSNEHHEDTPEEEDGDHLSKDKGGQRYRN-QGRSRKHKYRAVNGMGHGCASSTHAA 1155
Query: 205 VSYDARDPETQKEPN 219
+ ++ P K P+
Sbjct: 1156 EA--SKPPPGPKMPD 1194
>TC14418 weakly similar to GB|AAB62722.1|2232239|AF005037 secretory carrier
membrane protein {Homo sapiens;} , partial (9%)
Length = 1269
Score = 26.2 bits (56), Expect = 5.4
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = -3
Query: 104 CNCWVQDTFDIDQTEHNKEVILNTAKRLYGSHRGKLHEHFKKYETNEMALEHKPDE 159
CNC ++ Q EH K L R + + +G + +H K T + +++H+ ++
Sbjct: 709 CNCSKDAKCNMKQVEHEKPAKLQCTIRPHSTIKGPVPKHI*KGNT-K*SIDHRKEK 545
>AV773323
Length = 490
Score = 26.2 bits (56), Expect = 5.4
Identities = 14/42 (33%), Positives = 21/42 (49%)
Frame = -2
Query: 152 ALEHKPDEISEEDWEHLVDKFSSPTYKEMSARNKANKSKQVI 193
ALE+ PDE+ E +W+ ++ Y E R A S V+
Sbjct: 489 ALENLPDEVYETEWDLIMIDAPKGYYSEAPGRMAAVFSAAVM 364
>TC10776
Length = 626
Score = 25.8 bits (55), Expect = 7.1
Identities = 13/57 (22%), Positives = 26/57 (44%), Gaps = 1/57 (1%)
Frame = -1
Query: 170 DKFSSPTYKEMSARNKANKSKQVINHR-CGRKSFQAVSYDARDPETQKEPNYQDLWR 225
+KF S + ++ +N+ ++ R C F + + R+ ++ Y DLWR
Sbjct: 245 EKFQSRNHASITITGMSNQRNWLLLRRNCNNYDFHQLLPNIREYIVREPAKYDDLWR 75
>BE122514
Length = 466
Score = 25.8 bits (55), Expect = 7.1
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -1
Query: 131 LYGSHRGKLHEHFKK 145
+YGSH KLHE+++K
Sbjct: 76 VYGSHEQKLHENWRK 32
>TC10429 similar to UP|Q9ZR46 (Q9ZR46) P69C protein, partial (52%)
Length = 1742
Score = 25.8 bits (55), Expect = 7.1
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 16 KKKMKSATGKLPLCIPLDKMVAVGPGAPDFVTEISV 51
+K + + P+ +PL+KMVAVG IS+
Sbjct: 1519 EKDATAGAREFPITVPLNKMVAVGVAVEFIYALISI 1412
>BP080890
Length = 450
Score = 25.8 bits (55), Expect = 7.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -2
Query: 107 WVQDTFDIDQTEHNKEV 123
WV+D D+D++ N+EV
Sbjct: 224 WVEDVLDVDKSMRNREV 174
>TC19501
Length = 549
Score = 25.4 bits (54), Expect = 9.3
Identities = 10/22 (45%), Positives = 17/22 (76%)
Frame = -2
Query: 74 HILSQVFVNIII*FIFLFSFVL 95
+++ VFV+++ F FLFSF+L
Sbjct: 539 YLVYSVFVSVVSFFYFLFSFLL 474
>AV408921
Length = 429
Score = 25.4 bits (54), Expect = 9.3
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Frame = +1
Query: 87 FIFLFSF---VLIQYLQYISCNCWV 108
F+F+ F +LI + CNCW+
Sbjct: 118 FLFILGFGIPILILISSLVGCNCWI 192
>TC8565 homologue to UP|Q9AVQ9 (Q9AVQ9) Phosphate transporter, partial
(97%)
Length = 1913
Score = 25.4 bits (54), Expect = 9.3
Identities = 15/47 (31%), Positives = 24/47 (50%), Gaps = 1/47 (2%)
Frame = -1
Query: 173 SSPTYKEMSARNKANKS-KQVINHRCGRKSFQAVSYDARDPETQKEP 218
S P + + + +A++ +V H CGRK A +PET+ EP
Sbjct: 617 SEPLHSKHRSNERASRLFVRVFGHDCGRKRVVAT-----NPETKPEP 492
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.133 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,293,968
Number of Sequences: 28460
Number of extensions: 58923
Number of successful extensions: 362
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of query: 243
length of database: 4,897,600
effective HSP length: 88
effective length of query: 155
effective length of database: 2,393,120
effective search space: 370933600
effective search space used: 370933600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0302a.10