TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0302a.1
         (299 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, p...    72  1e-13
TC19704 weakly similar to UP|Q9SZ87 (Q9SZ87) RNA-directed DNA po...    60  6e-10
TC18710                                                                40  5e-04
TC18604 homologue to UP|KPPR_MESCR (P27774) Phosphoribulokinase,...    28  1.9
TC18044 similar to UP|Q9LDC0 (Q9LDC0) FKBP-like protein (Genomic...    28  2.5
TC8161 similar to UP|Q8LBV7 (Q8LBV7) Contains similarity to plas...    28  2.5
TC11556                                                                27  3.2
TC16531 weakly similar to UP|O22993 (O22993) Cell division prote...    27  4.2
AV775589                                                               26  7.1
TC9951 homologue to UP|TBB3_SOYBN (P28551) Tubulin beta chain (F...    26  9.3
BP040781                                                               26  9.3

>TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, partial
           (14%)
          Length = 592

 Score = 71.6 bits (174), Expect = 1e-13
 Identities = 53/186 (28%), Positives = 88/186 (46%), Gaps = 15/186 (8%)
 Frame = -3

Query: 126 VKDGDSNTKYFHNSVNWRRRTNAIRGLA-VDGEWVEDPKVVKSKMIEFFEAQFTSNP--E 182
           +K GD NT++FH S   RR  N I  +    G WVE  K V    + +F   ++S+P   
Sbjct: 578 LK*GDHNTRFFHASTIQRRDFNRILKIKDAHGIWVEGQKKVNEAAVNYFSDIYSSSPLQY 399

Query: 183 VGVFLEGTPFRSISDEDNLALTQTFNLEEIRTAVWECEGDRSLGPD------------VL 230
           +   L   P + ++D  N  L    + +EI+ AV+     ++ G D            ++
Sbjct: 398 LRECLAPIP-KLVTDRLNHKLCAQVSTDEIKEAVFSMGDLKAPGMDGINGLFYQQNREIV 222

Query: 231 KVDILRVLKDFHRNGVWPKGGNSSFITLIPNISNLMSLNDYISISVIGCMYKIVSKVLTT 290
           K D+   + DF  +G  P   N + +TLIP I +  ++  +  IS    +YK++SK++  
Sbjct: 221 KNDVNNAILDFFDHGELPVELNETLVTLIPKIPHAEAIQQFRPISCCSFIYKVISKIIVA 42

Query: 291 RLSKVM 296
           RL   M
Sbjct: 41  RLKPDM 24


>TC19704 weakly similar to UP|Q9SZ87 (Q9SZ87) RNA-directed DNA
           polymerase-like protein, partial (3%)
          Length = 530

 Score = 59.7 bits (143), Expect = 6e-10
 Identities = 39/126 (30%), Positives = 57/126 (44%), Gaps = 1/126 (0%)
 Frame = -3

Query: 49  KLKRLKLKLNQWEKENVGDLDKICKDPVTRINALDIKEGDGNLSSQEQKQRDDFLVEYWK 108
           K    KL L +W  +N    DK   +   ++  L      G    QE KQR   L + W+
Sbjct: 450 KTTNTKLALTEWHHQNFSRADKEIAELKNQLEHLQNYSNSGE-DWQEIKQRKMRLKDLWR 274

Query: 109 VAKFNDSLLFQKSRDRWVKDGDSNTKYFHNSVNWRRRTNAIRGLA-VDGEWVEDPKVVKS 167
             +   S   Q+SR +W+K GD NTK+FH S   RR  N I  +  + G WV     +  
Sbjct: 273 QEELFWS---QRSRIKWLKSGDKNTKFFHASTVQRRERNRIERIKDMQGTWVRSQLAINR 103

Query: 168 KMIEFF 173
            + +F+
Sbjct: 102 DVPDFY 85


>TC18710 
          Length = 843

 Score = 40.0 bits (92), Expect = 5e-04
 Identities = 21/69 (30%), Positives = 34/69 (48%)
 Frame = +2

Query: 228 DVLKVDILRVLKDFHRNGVWPKGGNSSFITLIPNISNLMSLNDYISISVIGCMYKIVSKV 287
           DV+K  +   +  F      P   N + +TLIP + +  S+N +  IS    +YK++SK+
Sbjct: 230 DVVKDSVT*AILAFLERAEIPNEINETLVTLIPKVPHPESINQFRPISGCTFLYKVISKI 409

Query: 288 LTTRLSKVM 296
              RL   M
Sbjct: 410 FVARLKDAM 436


>TC18604 homologue to UP|KPPR_MESCR (P27774) Phosphoribulokinase,
           chloroplast precursor  (Phosphopentokinase) (PRKASE)
           (PRK) , partial (45%)
          Length = 724

 Score = 28.1 bits (61), Expect = 1.9
 Identities = 13/31 (41%), Positives = 19/31 (60%)
 Frame = +2

Query: 248 PKGGNSSFITLIPNISNLMSLNDYISISVIG 278
           PKGGN    TLI + + ++ L+DY S+   G
Sbjct: 323 PKGGNPDSNTLISDTTTVICLDDYHSLDRTG 415


>TC18044 similar to UP|Q9LDC0 (Q9LDC0) FKBP-like protein (Genomic DNA,
           chromosome 3, P1 clone: MIL23), partial (41%)
          Length = 867

 Score = 27.7 bits (60), Expect = 2.5
 Identities = 15/43 (34%), Positives = 20/43 (45%)
 Frame = +1

Query: 77  TRINALDIKEGDGNLSSQEQKQRDDFLVEYWKVAKFNDSLLFQ 119
           TRI A D ++ DGN   QE K  +        +A   D  +FQ
Sbjct: 10  TRIGAADRRKMDGNALFQENKLEEAMQQYEMAIAYMGDDFMFQ 138


>TC8161 similar to UP|Q8LBV7 (Q8LBV7) Contains similarity to plastid
            ribosomal protein L19, partial (54%)
          Length = 1101

 Score = 27.7 bits (60), Expect = 2.5
 Identities = 10/19 (52%), Positives = 12/19 (62%)
 Frame = -3

Query: 128  DGDSNTKYFHNSVNWRRRT 146
            D D   KY HN++NW R T
Sbjct: 1075 DRDKKKKYIHNALNWYRYT 1019


>TC11556 
          Length = 551

 Score = 27.3 bits (59), Expect = 3.2
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = -3

Query: 225 LGPDVLKVDILRVLKDFHRNGVWPKGGNSSFITLIPNISNLMSLNDYISISVIGCMYKIV 284
           +GP  LK  ++ +  +    G WP G   SF T   +I N      + + S+    Y+I 
Sbjct: 267 VGPLRLKFGVVTLPFEKRNEGAWPSGIMRSFKTSYSSIPNGEPFRTW*NKSLRSIRYEIR 88

Query: 285 SKVLTT 290
           + +L T
Sbjct: 87  AGILQT 70


>TC16531 weakly similar to UP|O22993 (O22993) Cell division protein ISOLOG
           (Cell division protein-like), partial (6%)
          Length = 730

 Score = 26.9 bits (58), Expect = 4.2
 Identities = 21/54 (38%), Positives = 32/54 (58%), Gaps = 3/54 (5%)
 Frame = +1

Query: 50  LKRLKLKLNQWEKENVGD-LDKICKD--PVTRINALDIKEGDGNLSSQEQKQRD 100
           LK +K+ LNQ  KE  G+ L+ I     P T ++ L+ +E  GNL   E+++RD
Sbjct: 58  LKAVKVLLNQ--KEISGEELEFILNKYPPQTPLHLLEEEEDPGNLLFSEEQERD 213


>AV775589 
          Length = 215

 Score = 26.2 bits (56), Expect = 7.1
 Identities = 12/39 (30%), Positives = 19/39 (47%)
 Frame = +2

Query: 42  GAYTFKEKLKRLKLKLNQWEKENVGDLDKICKDPVTRIN 80
           G    KE +   +L   +W ++  G   ++CKD V  IN
Sbjct: 71  GKQNRKEDITNQQLGYGEWMQQVAGK*KEVCKDKVQPIN 187


>TC9951 homologue to UP|TBB3_SOYBN (P28551) Tubulin beta chain (Fragment),
           partial (44%)
          Length = 600

 Score = 25.8 bits (55), Expect = 9.3
 Identities = 12/35 (34%), Positives = 20/35 (56%)
 Frame = -1

Query: 67  DLDKICKDPVTRINALDIKEGDGNLSSQEQKQRDD 101
           DL + C D V  + ALD+++    L   E+K R++
Sbjct: 132 DLPEFCADLVAALAALDVEDFSHFLGKIEEKVREN 28


>BP040781 
          Length = 561

 Score = 25.8 bits (55), Expect = 9.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 102 FLVEYWKVAKFNDSLLFQKSRDRWVK 127
           F +++W  AKFN SL+ Q   + W+K
Sbjct: 118 FKIKWW--AKFNISLIQQTKLEAWIK 189


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.325    0.140    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,487,118
Number of Sequences: 28460
Number of extensions: 74679
Number of successful extensions: 435
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of query: 299
length of database: 4,897,600
effective HSP length: 90
effective length of query: 209
effective length of database: 2,336,200
effective search space: 488265800
effective search space used: 488265800
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)