BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0301c.1
(229 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14252 homologue to UP|Q9ZR85 (Q9ZR85) Ethylene-responsive elem... 464 e-132
TC14193 similar to UP|Q8S2S7 (Q8S2S7) Ethylene responsive elemen... 160 1e-40
TC15981 similar to UP|ERF3_ARATH (O80339) Ethylene responsive el... 118 7e-28
TC9504 similar to UP|Q9SXS8 (Q9SXS8) Ethylene responsive element... 115 8e-27
TC15842 homologue to GB|BAB62912.1|15207792|AB055883 ERF domain ... 107 1e-24
TC14319 similar to UP|AP23_ARATH (P42736) AP2 domain transcripti... 99 6e-22
TC14917 similar to GB|AAP37839.1|30725634|BT008480 At5g64750 {Ar... 97 2e-21
TC15600 homologue to UP|BAD01556 (BAD01556) ERF-like protein, pa... 94 2e-20
TC7954 similar to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protein... 94 3e-20
TC8031 similar to UP|Q9FR33 (Q9FR33) Ripening regulated protein ... 92 6e-20
TC8599 homologue to UP|Q40478 (Q40478) EREBP-4, partial (26%) 92 7e-20
TC8133 similar to GB|BAA97157.1|8809606|AB018117 ethylene respon... 92 1e-19
TC13814 similar to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protei... 88 1e-18
TC14763 homologue to GB|AAM16262.1|20334802|AY094001 AT3g20310/M... 87 3e-18
TC11381 similar to UP|Q8GZE9 (Q8GZE9) Ethylene responsive elemen... 86 7e-18
TC10014 similar to UP|Q8LLR3 (Q8LLR3) Ethylene-responsive elemen... 86 7e-18
TC9975 similar to UP|AAR15448 (AAR15448) AP2 transcription facto... 85 9e-18
BP036840 84 2e-17
TC14961 similar to UP|Q9LEM7 (Q9LEM7) AP2-domain DNA-binding pro... 78 1e-15
TC19103 homologue to UP|Q7Y0Y9 (Q7Y0Y9) Dehydration responsive e... 77 2e-15
>TC14252 homologue to UP|Q9ZR85 (Q9ZR85) Ethylene-responsive element binding
protein homolog, partial (47%)
Length = 1174
Score = 464 bits (1194), Expect = e-132
Identities = 229/229 (100%), Positives = 229/229 (100%)
Frame = +1
Query: 1 MAPRDKTNAVKVSGNGNGNGNGGVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDT 60
MAPRDKTNAVKVSGNGNGNGNGGVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDT
Sbjct: 115 MAPRDKTNAVKVSGNGNGNGNGGVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDT 294
Query: 61 AEEAARAYDTAAREFRGPKAKTNFPFPSDNVKNQSPSQSSTVESSSRDRDVAAAADSSSL 120
AEEAARAYDTAAREFRGPKAKTNFPFPSDNVKNQSPSQSSTVESSSRDRDVAAAADSSSL
Sbjct: 295 AEEAARAYDTAAREFRGPKAKTNFPFPSDNVKNQSPSQSSTVESSSRDRDVAAAADSSSL 474
Query: 121 DLNLAPSVRFPFRPQFPQMPAANQVLFFDAILRAGMVGGSPASQRYGFDFHTYNHPVAAS 180
DLNLAPSVRFPFRPQFPQMPAANQVLFFDAILRAGMVGGSPASQRYGFDFHTYNHPVAAS
Sbjct: 475 DLNLAPSVRFPFRPQFPQMPAANQVLFFDAILRAGMVGGSPASQRYGFDFHTYNHPVAAS 654
Query: 181 EIQAVAGAQSDSDSSSVIDLNHYESGVVIKAGGRNFDLDLNYPPMEDMA 229
EIQAVAGAQSDSDSSSVIDLNHYESGVVIKAGGRNFDLDLNYPPMEDMA
Sbjct: 655 EIQAVAGAQSDSDSSSVIDLNHYESGVVIKAGGRNFDLDLNYPPMEDMA 801
>TC14193 similar to UP|Q8S2S7 (Q8S2S7) Ethylene responsive element binding
factor 4-like protein, partial (50%)
Length = 1128
Score = 160 bits (406), Expect = 1e-40
Identities = 107/197 (54%), Positives = 120/197 (60%), Gaps = 23/197 (11%)
Frame = +3
Query: 26 EVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDTAAREFRGPKAKTNFP 85
EVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYD AAR+FRGPKAKTNFP
Sbjct: 168 EVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAARQFRGPKAKTNFP 347
Query: 86 ---------FPSD----NVK-NQSPSQSSTVESSSRDRDVAAAADSSSLDLNLAPSVRFP 131
P+D NVK NQSPSQSSTVESS+ +RD+ RFP
Sbjct: 348 QSPSPDNNTGPNDVVVANVKANQSPSQSSTVESSTPERDITRGGG--------VVVDRFP 503
Query: 132 FRPQFPQ--MP-AANQVLFFDAILRAGMVGGSPASQRYGFDFHTYNHPVAASEIQA---- 184
F P PQ MP + + + A +R ++ PASQ +F PV
Sbjct: 504 FLPLHPQQLMPFSGGGDVVYTAPVRP-VIFLDPASQA---EFFAQRFPVRFESGPVDFTG 671
Query: 185 --VAGAQSDSDSSSVID 199
G QSDSDSSSV+D
Sbjct: 672 MFGGGIQSDSDSSSVVD 722
>TC15981 similar to UP|ERF3_ARATH (O80339) Ethylene responsive element
binding factor 3 (AtERF3), partial (45%)
Length = 671
Score = 118 bits (296), Expect = 7e-28
Identities = 69/137 (50%), Positives = 79/137 (57%), Gaps = 24/137 (17%)
Frame = +1
Query: 25 KEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDTAAREFRGPKAKTNF 84
KE FRGVRKRPWGR+AAEIRDP KK+RVWLGTFD+AE+AARAYD AAR FRGPKAKTNF
Sbjct: 229 KETRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEDAARAYDAAARSFRGPKAKTNF 408
Query: 85 PFPS------------------------DNVKNQSPSQSSTVESSSRDRDVAAAADSSSL 120
P P D V+ + SSTVES S R +++A
Sbjct: 409 PTPDEIIAGGGDEISQIPISHHHGFSKFDPVRPTTSGMSSTVESFSGPRVPSSSA----- 573
Query: 121 DLNLAPSVRFPFRPQFP 137
+ R P RP P
Sbjct: 574 ------AARVPRRPVNP 606
>TC9504 similar to UP|Q9SXS8 (Q9SXS8) Ethylene responsive element binding
factor, partial (35%)
Length = 633
Score = 115 bits (287), Expect = 8e-27
Identities = 53/67 (79%), Positives = 59/67 (87%)
Frame = +2
Query: 19 NGNGGVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDTAAREFRGP 78
NG+ +KE +RGVRKRPWGR+AAEIRDP KK+RVWLGTFD+AEEAARAYD AAR RGP
Sbjct: 404 NGSAVLKEPRYRGVRKRPWGRFAAEIRDPMKKARVWLGTFDSAEEAARAYDAAARALRGP 583
Query: 79 KAKTNFP 85
KAKTNFP
Sbjct: 584 KAKTNFP 604
>TC15842 homologue to GB|BAB62912.1|15207792|AB055883 ERF domain protein12
{Arabidopsis thaliana;} , partial (41%)
Length = 746
Score = 107 bits (268), Expect = 1e-24
Identities = 50/61 (81%), Positives = 53/61 (85%)
Frame = +2
Query: 25 KEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDTAAREFRGPKAKTNF 84
+E H+RGVRKRPWGRYAAEIRDP KK+RVWLGTFDT EEAA AYD AAR RG KAKTNF
Sbjct: 173 REGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNF 352
Query: 85 P 85
P
Sbjct: 353 P 355
>TC14319 similar to UP|AP23_ARATH (P42736) AP2 domain transcription factor
RAP2.3 (Related to AP2 protein 3) (Cadmium-induced
protein AS30), partial (37%)
Length = 1130
Score = 99.0 bits (245), Expect = 6e-22
Identities = 59/124 (47%), Positives = 74/124 (59%), Gaps = 9/124 (7%)
Frame = +3
Query: 5 DKTNAVKVSGNGNGN-GNGGVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEE 63
DK K S G+G G ++ +RG+R+RPWG++AAEIRDP K RVWLGTF TAEE
Sbjct: 327 DKKGEKKKSVVGSGGAGKKNARKNVYRGIRQRPWGKWAAEIRDPQKGVRVWLGTFPTAEE 506
Query: 64 AARAYDTAAREFRGPKAKTNFPF------PSDNVKNQSPSQS--STVESSSRDRDVAAAA 115
AARAYD AA+ RG KAK NFP P+ + SP Q S+ SS ++
Sbjct: 507 AARAYDEAAKRIRGDKAKLNFPDTVAAPPPTKKQRCLSPEQPEYSSSGSSGPTTTTTGSS 686
Query: 116 DSSS 119
DSS+
Sbjct: 687 DSSA 698
>TC14917 similar to GB|AAP37839.1|30725634|BT008480 At5g64750 {Arabidopsis
thaliana;}, partial (17%)
Length = 1051
Score = 97.4 bits (241), Expect = 2e-21
Identities = 49/89 (55%), Positives = 64/89 (71%)
Frame = +3
Query: 29 FRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDTAAREFRGPKAKTNFPFPS 88
+RGVR+RPWG++AAEIRDP K +RVWLGTF+TAEEAARAYD A+ FRG KAK NFP
Sbjct: 210 YRGVRQRPWGKWAAEIRDPFKAARVWLGTFNTAEEAARAYDQASLRFRGNKAKLNFPENV 389
Query: 89 DNVKNQSPSQSSTVESSSRDRDVAAAADS 117
++ S +Q +T S+S + A++
Sbjct: 390 RLLQQPSINQPTTHFSNSNSSEPIVHAEA 476
>TC15600 homologue to UP|BAD01556 (BAD01556) ERF-like protein, partial (36%)
Length = 570
Score = 94.0 bits (232), Expect = 2e-20
Identities = 42/57 (73%), Positives = 49/57 (85%)
Frame = +3
Query: 29 FRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDTAAREFRGPKAKTNFP 85
+RG+R+RPWG++AAEIRDP K RVWLGTF+TAEEAARAYD AR+ RG KAK NFP
Sbjct: 396 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFP 566
>TC7954 similar to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protein, partial
(75%)
Length = 1708
Score = 93.6 bits (231), Expect = 3e-20
Identities = 42/57 (73%), Positives = 48/57 (83%)
Frame = +2
Query: 29 FRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDTAAREFRGPKAKTNFP 85
+RG+R+RPWG++AAEIRDP K RVWLGTF+TAEEAARAYD AR RG KAK NFP
Sbjct: 524 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGNKAKVNFP 694
>TC8031 similar to UP|Q9FR33 (Q9FR33) Ripening regulated protein DDTFR10/A
(Fragment), partial (44%)
Length = 1109
Score = 92.4 bits (228), Expect = 6e-20
Identities = 44/62 (70%), Positives = 52/62 (82%), Gaps = 1/62 (1%)
Frame = +2
Query: 25 KEVHFRGVRKRPWGRYAAEIRDPGKK-SRVWLGTFDTAEEAARAYDTAAREFRGPKAKTN 83
K+ H+RGVR+RPWG++AAEIRDP K+ SRVWLGTFDTA EAA+AYD AA + RG KA N
Sbjct: 539 KKQHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFKLRGSKAILN 718
Query: 84 FP 85
FP
Sbjct: 719 FP 724
Score = 25.8 bits (55), Expect = 6.6
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 86 FPSDNVKNQSPSQSSTVESSSRDRDVAAAADSSSLDLNLAPSVRFPFRP 134
F N SP+QSS+ +SSS ++ + D N P F F+P
Sbjct: 236 FDEITTSNTSPTQSSSSDSSSSSSNI--SLDHYFDTQNQLPLFEFEFKP 376
>TC8599 homologue to UP|Q40478 (Q40478) EREBP-4, partial (26%)
Length = 632
Score = 92.0 bits (227), Expect = 7e-20
Identities = 44/71 (61%), Positives = 53/71 (73%), Gaps = 1/71 (1%)
Frame = +3
Query: 28 HFRGVRKRPWGRYAAEIRDPGKK-SRVWLGTFDTAEEAARAYDTAAREFRGPKAKTNFPF 86
H+RGVR+RPWG++AAEIRDP +K SRVWLGTFDTA EAA+AYD AA + RG +A NFP
Sbjct: 387 HYRGVRRRPWGKFAAEIRDPNRKGSRVWLGTFDTAIEAAKAYDRAAFKMRGSRAILNFPL 566
Query: 87 PSDNVKNQSPS 97
N + S
Sbjct: 567 EVGNCHEEEES 599
>TC8133 similar to GB|BAA97157.1|8809606|AB018117 ethylene responsive
element binding factor 5 (ATERF5) {Arabidopsis
thaliana;} , partial (22%)
Length = 785
Score = 91.7 bits (226), Expect = 1e-19
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Frame = +1
Query: 24 VKEVHFRGVRKRPWGRYAAEIRDPGKK-SRVWLGTFDTAEEAARAYDTAAREFRGPKAKT 82
V++ H+RGVR+RPWG++AAEIRDP K+ SR+WLGTFDTA EAA+ YD AA FRG +A
Sbjct: 592 VEKKHYRGVRQRPWGKFAAEIRDPNKRGSRLWLGTFDTAIEAAKVYDRAAFTFRGLEAVL 771
Query: 83 NFPF 86
NFPF
Sbjct: 772 NFPF 783
>TC13814 similar to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protein, partial
(20%)
Length = 535
Score = 88.2 bits (217), Expect = 1e-18
Identities = 45/81 (55%), Positives = 56/81 (68%), Gaps = 6/81 (7%)
Frame = +2
Query: 11 KVSGNGNGNGNGGVKEVH------FRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEA 64
K S +G G+K+ +RG+R+RPWG++AAEIRDP K RV LGTF+TAEEA
Sbjct: 266 KGSDEKSGESEEGIKKGKRVRKNLYRGIRQRPWGKWAAEIRDPRKGVRVGLGTFNTAEEA 445
Query: 65 ARAYDTAAREFRGPKAKTNFP 85
A+AYD AA+ RG KAK NFP
Sbjct: 446 AQAYDDAAKRIRGDKAKLNFP 508
>TC14763 homologue to GB|AAM16262.1|20334802|AY094001 AT3g20310/MQC12_6
{Arabidopsis thaliana;}, partial (18%)
Length = 618
Score = 86.7 bits (213), Expect = 3e-18
Identities = 44/78 (56%), Positives = 52/78 (66%), Gaps = 12/78 (15%)
Frame = +1
Query: 5 DKTNAVKVSGNGNGNGNGGVK------------EVHFRGVRKRPWGRYAAEIRDPGKKSR 52
+K +K+ G G G V+ E +RGVRKRPWGR+AAEIRDP KK+R
Sbjct: 385 EKIRPLKMGKGGAAAGAGAVELDGPGPRPVFFQEPRYRGVRKRPWGRFAAEIRDPMKKAR 564
Query: 53 VWLGTFDTAEEAARAYDT 70
VWLGTFDTAE+AARAYDT
Sbjct: 565 VWLGTFDTAEDAARAYDT 618
>TC11381 similar to UP|Q8GZE9 (Q8GZE9) Ethylene responsive element binding
protein, partial (36%)
Length = 497
Score = 85.5 bits (210), Expect = 7e-18
Identities = 44/76 (57%), Positives = 52/76 (67%), Gaps = 1/76 (1%)
Frame = +3
Query: 11 KVSGNGNGNGNGGVKEVHFRGVRKRPWGRYAAEIRDPGKKS-RVWLGTFDTAEEAARAYD 69
+VS NG G+ KE +RGVR+RPWG++AAEIRD + RVWLGTFD+AE AA AYD
Sbjct: 243 EVSSEENGCGSSPRKEKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYD 422
Query: 70 TAAREFRGPKAKTNFP 85
AA RG A NFP
Sbjct: 423 QAAFAMRGSSAILNFP 470
>TC10014 similar to UP|Q8LLR3 (Q8LLR3) Ethylene-responsive element binding
protein 1, partial (33%)
Length = 580
Score = 85.5 bits (210), Expect = 7e-18
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Frame = +3
Query: 29 FRGVRKRPWGRYAAEIRDPGKK-SRVWLGTFDTAEEAARAYDTAAREFRGPKAKTNFPFP 87
FRGVR+RPWG++AAEIRDP K +RVWLGT++T EEA AYD AA + RG KAK NFP
Sbjct: 297 FRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETEEEAGLAYDRAAFKIRGRKAKLNFPHL 476
Query: 88 SDNVKNQSPSQSSTVES 104
+ + P +S VE+
Sbjct: 477 IGS--DTQPETASVVEA 521
>TC9975 similar to UP|AAR15448 (AAR15448) AP2 transcription factor, partial
(41%)
Length = 865
Score = 85.1 bits (209), Expect = 9e-18
Identities = 48/101 (47%), Positives = 63/101 (61%), Gaps = 9/101 (8%)
Frame = +1
Query: 29 FRGVRKRPWGRYAAEIRDPGKK-SRVWLGTFDTAEEAARAYDTAAREFRGPKAKTNFPF- 86
+RGVR+RPWG++AAEIRDP +K +RVWLGTFDT +AA+AYD AA RG KA NFP
Sbjct: 184 YRGVRRRPWGKFAAEIRDPTRKGTRVWLGTFDTEIDAAKAYDYAAFRMRGRKAILNFPLE 363
Query: 87 -------PSDNVKNQSPSQSSTVESSSRDRDVAAAADSSSL 120
PS++ + + Q + SSS + S+SL
Sbjct: 364 AGKASPKPSNSGRKRGREQRESGTSSSHVMS*EFSVSSTSL 486
>BP036840
Length = 584
Score = 84.0 bits (206), Expect = 2e-17
Identities = 44/94 (46%), Positives = 58/94 (60%)
Frame = +3
Query: 22 GGVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDTAAREFRGPKAK 81
GG + +RGVRKR WGR+ +EIR+P KKSR+WLG+F E AA+AYD AA +G KA+
Sbjct: 66 GGTRHPVYRGVRKRRWGRWVSEIREPRKKSRIWLGSFPVPEMAAKAYDVAAYCLKGRKAQ 245
Query: 82 TNFPFPSDNVKNQSPSQSSTVESSSRDRDVAAAA 115
NFP D + V ++ RD+ AAA
Sbjct: 246 LNFPDEVDRL---------PVPATCTARDIQAAA 320
>TC14961 similar to UP|Q9LEM7 (Q9LEM7) AP2-domain DNA-binding protein,
partial (27%)
Length = 1135
Score = 78.2 bits (191), Expect = 1e-15
Identities = 46/112 (41%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Frame = +1
Query: 11 KVSGNGNGNGNGGVKE--VHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAY 68
K S G G GG + ++RGVR+R WG++ AEIR+P + R+WLGTF TA AA AY
Sbjct: 328 KGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGKRLWLGTFATAIGAALAY 507
Query: 69 DTAAREFRGPKAKTNFP-FPSDNVKNQSPSQSSTVESSSRDRDVAAAADSSS 119
D AAR G A+ NFP + +S SS S A A++ S
Sbjct: 508 DEAARAMYGSSARLNFPNVAVSHFSEESLKDSSVANDDSGSSMAAVLANTES 663
>TC19103 homologue to UP|Q7Y0Y9 (Q7Y0Y9) Dehydration responsive element
binding protein, partial (37%)
Length = 382
Score = 77.4 bits (189), Expect = 2e-15
Identities = 31/57 (54%), Positives = 44/57 (76%)
Frame = +1
Query: 29 FRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDTAAREFRGPKAKTNFP 85
+RG+R+R WG++ AE+R+P K+SR+WLG++ + AARAYDTA RGP A+ NFP
Sbjct: 151 YRGIRQRKWGKWVAEVREPNKRSRIWLGSYASPVAAARAYDTAVFYLRGPSARLNFP 321
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.314 0.131 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,478,323
Number of Sequences: 28460
Number of extensions: 43774
Number of successful extensions: 344
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of query: 229
length of database: 4,897,600
effective HSP length: 87
effective length of query: 142
effective length of database: 2,421,580
effective search space: 343864360
effective search space used: 343864360
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0301c.1